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Comparison of glutenin subunit composition among
  Australian and North American wheat classes



      Tatsuya M. Ikeda and Kanenori Takata
               池田 達哉、高田 兼則

   National Agriculture and Food Research Organization (NARO)
          Western Agricultural Research Center, JAPAN

           農研機構(NARO)近畿中国四国農業研究中心
                    日本、広島
Classification of HMW-GS alleles
          1        2*
2

7                                                                                                        Glu-A1
8
12              null
      a       b c

2
                                     6                                                     21
7         7        7        7                 20       13       13       14
                                                       16       19       15       17
                                                                                  18
                                                                                                         Glu-B1
8                  8                 8                                                              22
                            9
12
      a        b        c       d         e        f        g        h        i        j        k
                                                       2.2

2         2        3        4                 2
                                     5
7                                                                                                        Glu-D1
8
          12                         10       10
12                 12       12                         12
      a        b        c        d        e        f

                                                                Payne & Lawrence 1983
Classification of LMW-GS alleles




Glu-A3 a    f   g   f   b   c   d   f   f    g      c    f
Glu-B3 a    j   g   h   b   h   b   j   ad   g      ac   m
Glu-D3 a    b   c   c   b   b   a   a   c    b      b    c

                                                 Ikeda et al. IWGS (2008)
Identification methods for Glu-3 alleles
     and a temporal standard cultivar set




International collaboration has been going on to unify Glu-3 alleles.
                                     Ikeda et al. Int. Wheat Genet Symp O42 (2008)
                                     Ikeda et al. Int. Wheat Conference. (2010)
                                     Liu et al. BMC Plant Biology 10:124 (2010)
Effect of glutenin alleles on gluten network




          Wild-type                  Glu-A3d, Glu-B3g
                                     (over-expression = more network)




Glu-D1d                                Glu-A1c, Glu-A3e
(Extra cysteine = tighter network)     (null type = less network)
Effect of Glu-1 alleles on gluten strength



 Gluten                          Glu-1 allele
strength
             Glu-A1               Glu-B1                  Glu-D1

Strong                          7OE+8 (al)                5+10 (d)

                           13+16 (f), 17+18 (i)
           1 (a), 2* (b)        7+8 (b/u),          2+12 (a), 3+12 (b)
                                  7+9 (c)
                           7 (a), 6+8 (d), 20 (e)
 Weak        null (c)                                     4+12 (c)
                                   6.1 (bl)


                                                    Based on Payne (1987)
Effect of Glu-3 alleles on gluten strength




 Gluten              Glu-3 allele
strength
           Glu-A3      Glu-B3         Glu-D3

Strong                    g
             d          b, ab
           a, b, c      d, h, i     a, b, c, d, f
              f           c               l?
 Weak
             e             j
Glutenin subunit combination and gluten strength

                  Strong
Glu-B1al/Glu-D1d     Strong                            Extra strong

        Glu-D1d

 Glu-1
 (HMW-GS)
                                       Medium
        Glu-D1a




       Glu-A1c
       Glu-B1a       Weak
              Weak                                                Strong
                      Glu-A3e/f   Glu-A3e/f        Glu-A3d    Glu-B3g
                      Glu-B3j     Glu-B3h               Glu-B3b
                                  Glu-3 (LMW-GS)
Australian & North American wheat classes

Class                             Protein      Usage
APH (Australian Prime Hard)       ~13%         Yellow alkaline noodle

ASW (Australian Standard White)   ~10.5%       White-salted noodle

CWRS (1CW)
(Canada Western Red Spring)       ~13.5%       Best for Pullman-type bread

DNS (Dark Northern Spring)        ~14.0%       Bread & Yellow alkaline noodle

HRW (Hared Red Winter)            ~11.5%       Bread & Yellow alkaline noodle

WW (Western White)                ~10%         Cake & Cookie


          Each class blending various cultivars for specific usage.
Background & Objectives

• Each wheat classes blended various cultivars for particular usages.

• Studying glutenin compositions of these classes should help us to
  understand the relationships with their usages.

• But, commercial cultivars are not available through seed banks.


                    Materials & Methods
• 60 seeds of wheat classes imported into Japan in 2009.

• Isolating DNA and protein from individual seeds.

• Identifying glutenin alleles by PCR markers, SDS-PAGE and 2D
  electrophoresis.
SDS-PAGE analysis of glutenin fractions
         of wheat classes


DNS           HRW                       ASW(N)


                                                          HMW-GS




                                                          LMW-GS
                                                          & gliadins




                    SDS-PAGE condition according to Dr.R.J.Peña
Glu-3 allele identification



      pH6                 IEF                   pH10 pH6               IEF                       pH10
kDa
                                3                                             11
 50                                  3     3                                       3


            12   12
                                    4                                   1
                      5    1                                       5
                                           11                            2                   3
 37                         2                                                       4

                                10                                       10            8/9
                                     8/9
      DNS                                            HRW
             Glu-A3d, Glu-B3h, Glu-D3a                     Glu-A3b, Glu-B3b, Glu-D3c


        Combination of PCR, SDS-PAGE, 2DE and N-terminal sequencing.

                                                                             Ikeda et al. (2006)
Observed number of allelic combination

 35

 30

 25

 20

 15

 10

  5

  0
      APH    ASW   ASWN    1CW   DNS    HRW    WW


 = minimum number of cultivars consisting of each class
Glutenin subunit composition


             Glu-A1                  Glu-B1
100%



75%



50%



25%



 0%
       1CW DNS HRW PH ASW WW
           a   b  c  new
Glutenin subunit composition


Glu-D1                   Glu-A3
Glu-3 subunit composition


Glu-B3                   Glu-D3
Identification of a new Glu-A1 alleles in ASWN




                      a                     a
           b   new         new   b new           b




 The new Glu-A1 allele was found in an ASWN cultivar, Calingiri.
Identification of a new Glu-3 alleles in HRW



                              pH6               IEF                     pH10


                                                         3          3
           d                                    4             3
    d*
f

                                12    12            1
                                            5
                                                     2            11

                                                         10
                                                              8/9


                                    Glu-A3d*, Glu-B3ab, Glu-D3f

         Glu-A3d* was not found before.
         Glu-D3f was found in Cheyenne (Ikeda et al. 2006)
Identification of a new Glu-3 alleles in WW



                              pH6              IEF                pH10


                                                     12
                                                          3



                                               5     1
                                                      2       4

                                                     10
                                                          8/9

                                    Glu-A3c, Glu-B3ae, Glu-D3c

A new Glu-B3 allele (Glu-B3ae) was found among club wheats and
expresses less amount of LMW-GS
Glutenin subunit combination and gluten strength

                  Strong
Glu-B1al/Glu-D1d     Strong                          Extra strong

        Glu-D1d

 Glu-1
 (HMW-GS)
                                     Medium
        Glu-D1a




       Glu-A1c
       Glu-B1a       Weak
              Weak                                              Strong
                      Glu-A3e   Glu-A3e/f        Glu-A3d    Glu-B3g
                      Glu-B3j   Glu-B3h               Glu-B3b
                                Glu-3 (LMW-GS)
Glutenin subunit combination and gluten strength

                  Strong
Glu-B1al/Glu-D1d     Strong                           Extra strong
                                            DNS
                                  1CW
        Glu-D1d                                      HRW
                                                  ASW
 Glu-1
                                                  APH
 (HMW-GS)
                                     Medium
        Glu-D1a


                     Weak

       Glu-A1c        Club            WW
       Glu-B1a

              Weak                                               Strong
                      Glu-A3e   Glu-A3e/f         Glu-A3d    Glu-B3g
                      Glu-B3j   Glu-B3h                Glu-B3b
                                Glu-3 (LMW-GS)
Wheat breeding targets

             Strong
Glu-B1al/Glu-D1d                                                Blending
                       Pullman-type bread(11.5~13.5%)           (>12%)
        Glu-D1d
                                              Yellow alkaline
                                              noodle

  Glu-1
        Glu-D1a                           Noodle                European
                                         (8.0~12.5%)            bread



                       Cake & Cookies
                              (<10%)
       Glu-A1c
       Glu-B1a
                                                                           Strong
            Weak Glu-A3e                Glu-B3h          Glu-A3d    Glu-B3g
                   Glu-B3j                                    Glu-B3b
                                         Glu-3
Results & Discussion
• Glutenin compositions of each class appear to reflect end-use properties.

• Most of winter wheat classes (HRW, ASW) have glutenin composition
  expected to increase gluten strength, which might compensate relatively
  lower protein content.

• Majority of APH lacked Glu-D1d allele. It might suitable for the texture of
  yellow alkaline noodle.

• Most of WW lacked one (not two) of HMW-GSs. Club wheat also
  contains a unique Glu-B3 allele (Glu-B3ae). These compositions might
  be suitable for cake and cookie making.

• It is necessary to clarify the effect of gliadin allele compositions on
  gluten properties (extensibility). We need recombinant lines breaking
  Glu-3/Gli-1 linkages (e.g. Glu-B3h/Gli-B1d).
Further international collaboration
                     for gluten research

                 Proposal of International Gluten Research Group as a
                 part of IRIWI (International Research Initiative for
                 Wheat Improvement)


Activities   Exchanging and sharing valuable wheat cultivars.

             Unifying the nomenclature of gluten protein alleles and the
             standard methods to examine gluten proteins.

             Studying the usefulness of particular gluten compositions for
             quality under various environmental conditions.

 Goals
             Development of wheat cultivars with specific grain quality
             attributes under different environmental conditions, including
             heat and drought stresses.
We need further collaboration



       Thank you!

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Comparison of glutenin subunit composition among Australian and North American wheat classes

  • 1. Comparison of glutenin subunit composition among Australian and North American wheat classes Tatsuya M. Ikeda and Kanenori Takata 池田 達哉、高田 兼則 National Agriculture and Food Research Organization (NARO) Western Agricultural Research Center, JAPAN 農研機構(NARO)近畿中国四国農業研究中心 日本、広島
  • 2. Classification of HMW-GS alleles 1 2* 2 7 Glu-A1 8 12 null a b c 2 6 21 7 7 7 7 20 13 13 14 16 19 15 17 18 Glu-B1 8 8 8 22 9 12 a b c d e f g h i j k 2.2 2 2 3 4 2 5 7 Glu-D1 8 12 10 10 12 12 12 12 a b c d e f Payne & Lawrence 1983
  • 3. Classification of LMW-GS alleles Glu-A3 a f g f b c d f f g c f Glu-B3 a j g h b h b j ad g ac m Glu-D3 a b c c b b a a c b b c Ikeda et al. IWGS (2008)
  • 4. Identification methods for Glu-3 alleles and a temporal standard cultivar set International collaboration has been going on to unify Glu-3 alleles. Ikeda et al. Int. Wheat Genet Symp O42 (2008) Ikeda et al. Int. Wheat Conference. (2010) Liu et al. BMC Plant Biology 10:124 (2010)
  • 5. Effect of glutenin alleles on gluten network Wild-type Glu-A3d, Glu-B3g (over-expression = more network) Glu-D1d Glu-A1c, Glu-A3e (Extra cysteine = tighter network) (null type = less network)
  • 6. Effect of Glu-1 alleles on gluten strength Gluten Glu-1 allele strength Glu-A1 Glu-B1 Glu-D1 Strong 7OE+8 (al) 5+10 (d) 13+16 (f), 17+18 (i) 1 (a), 2* (b) 7+8 (b/u), 2+12 (a), 3+12 (b) 7+9 (c) 7 (a), 6+8 (d), 20 (e) Weak null (c) 4+12 (c) 6.1 (bl) Based on Payne (1987)
  • 7. Effect of Glu-3 alleles on gluten strength Gluten Glu-3 allele strength Glu-A3 Glu-B3 Glu-D3 Strong g d b, ab a, b, c d, h, i a, b, c, d, f f c l? Weak e j
  • 8. Glutenin subunit combination and gluten strength Strong Glu-B1al/Glu-D1d Strong Extra strong Glu-D1d Glu-1 (HMW-GS) Medium Glu-D1a Glu-A1c Glu-B1a Weak Weak Strong Glu-A3e/f Glu-A3e/f Glu-A3d Glu-B3g Glu-B3j Glu-B3h Glu-B3b Glu-3 (LMW-GS)
  • 9. Australian & North American wheat classes Class Protein Usage APH (Australian Prime Hard) ~13% Yellow alkaline noodle ASW (Australian Standard White) ~10.5% White-salted noodle CWRS (1CW) (Canada Western Red Spring) ~13.5% Best for Pullman-type bread DNS (Dark Northern Spring) ~14.0% Bread & Yellow alkaline noodle HRW (Hared Red Winter) ~11.5% Bread & Yellow alkaline noodle WW (Western White) ~10% Cake & Cookie Each class blending various cultivars for specific usage.
  • 10. Background & Objectives • Each wheat classes blended various cultivars for particular usages. • Studying glutenin compositions of these classes should help us to understand the relationships with their usages. • But, commercial cultivars are not available through seed banks. Materials & Methods • 60 seeds of wheat classes imported into Japan in 2009. • Isolating DNA and protein from individual seeds. • Identifying glutenin alleles by PCR markers, SDS-PAGE and 2D electrophoresis.
  • 11. SDS-PAGE analysis of glutenin fractions of wheat classes DNS HRW ASW(N) HMW-GS LMW-GS & gliadins SDS-PAGE condition according to Dr.R.J.Peña
  • 12. Glu-3 allele identification pH6 IEF pH10 pH6 IEF pH10 kDa 3 11 50 3 3 3 12 12 4 1 5 1 5 11 2 3 37 2 4 10 10 8/9 8/9 DNS HRW Glu-A3d, Glu-B3h, Glu-D3a Glu-A3b, Glu-B3b, Glu-D3c Combination of PCR, SDS-PAGE, 2DE and N-terminal sequencing. Ikeda et al. (2006)
  • 13. Observed number of allelic combination 35 30 25 20 15 10 5 0 APH ASW ASWN 1CW DNS HRW WW = minimum number of cultivars consisting of each class
  • 14. Glutenin subunit composition Glu-A1 Glu-B1 100% 75% 50% 25% 0% 1CW DNS HRW PH ASW WW a b c new
  • 17. Identification of a new Glu-A1 alleles in ASWN a a b new new b new b The new Glu-A1 allele was found in an ASWN cultivar, Calingiri.
  • 18. Identification of a new Glu-3 alleles in HRW pH6 IEF pH10 3 3 d 4 3 d* f 12 12 1 5 2 11 10 8/9 Glu-A3d*, Glu-B3ab, Glu-D3f Glu-A3d* was not found before. Glu-D3f was found in Cheyenne (Ikeda et al. 2006)
  • 19. Identification of a new Glu-3 alleles in WW pH6 IEF pH10 12 3 5 1 2 4 10 8/9 Glu-A3c, Glu-B3ae, Glu-D3c A new Glu-B3 allele (Glu-B3ae) was found among club wheats and expresses less amount of LMW-GS
  • 20. Glutenin subunit combination and gluten strength Strong Glu-B1al/Glu-D1d Strong Extra strong Glu-D1d Glu-1 (HMW-GS) Medium Glu-D1a Glu-A1c Glu-B1a Weak Weak Strong Glu-A3e Glu-A3e/f Glu-A3d Glu-B3g Glu-B3j Glu-B3h Glu-B3b Glu-3 (LMW-GS)
  • 21. Glutenin subunit combination and gluten strength Strong Glu-B1al/Glu-D1d Strong Extra strong DNS 1CW Glu-D1d HRW ASW Glu-1 APH (HMW-GS) Medium Glu-D1a Weak Glu-A1c Club WW Glu-B1a Weak Strong Glu-A3e Glu-A3e/f Glu-A3d Glu-B3g Glu-B3j Glu-B3h Glu-B3b Glu-3 (LMW-GS)
  • 22. Wheat breeding targets Strong Glu-B1al/Glu-D1d Blending Pullman-type bread(11.5~13.5%) (>12%) Glu-D1d Yellow alkaline noodle Glu-1 Glu-D1a Noodle European (8.0~12.5%) bread Cake & Cookies (<10%) Glu-A1c Glu-B1a Strong Weak Glu-A3e Glu-B3h Glu-A3d Glu-B3g Glu-B3j Glu-B3b Glu-3
  • 23. Results & Discussion • Glutenin compositions of each class appear to reflect end-use properties. • Most of winter wheat classes (HRW, ASW) have glutenin composition expected to increase gluten strength, which might compensate relatively lower protein content. • Majority of APH lacked Glu-D1d allele. It might suitable for the texture of yellow alkaline noodle. • Most of WW lacked one (not two) of HMW-GSs. Club wheat also contains a unique Glu-B3 allele (Glu-B3ae). These compositions might be suitable for cake and cookie making. • It is necessary to clarify the effect of gliadin allele compositions on gluten properties (extensibility). We need recombinant lines breaking Glu-3/Gli-1 linkages (e.g. Glu-B3h/Gli-B1d).
  • 24. Further international collaboration for gluten research Proposal of International Gluten Research Group as a part of IRIWI (International Research Initiative for Wheat Improvement) Activities Exchanging and sharing valuable wheat cultivars. Unifying the nomenclature of gluten protein alleles and the standard methods to examine gluten proteins. Studying the usefulness of particular gluten compositions for quality under various environmental conditions. Goals Development of wheat cultivars with specific grain quality attributes under different environmental conditions, including heat and drought stresses.
  • 25. We need further collaboration Thank you!