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Spectroscopic sensing of soil nutrients
Presented By:
Bhawana Singh
Senior research fellow
V1 Agrionics
Content
• Soil nutrients
• Sensing techniques
• Spectroscopy basics
• Spectroscopy Types
• Detailed methodology
• Reference
2
16 most essential nutrients of soil. These
nutrients can be classified as:
1. The primary macronutrients: nitrogen (N),
phosphorus (P), potassium (K)
2. The secondary macronutrients: calcium (Ca),
sulfur (S), magnesium (Mg)
3. The micronutrients: boron (B), chlorine (Cl),
manganese (Mn), iron (Fe), zinc (Zn), copper
(Cu),molybdenum (Mo), nickel (Ni)
These nutrients are supplied by the soil and by
the addition of fertilizers such as manure,
compost, and fertilizer salts.
What we want to sense?
3
Ref.
Soil Sampling and analysis
Soil Nutrients
4
Soil Nutrients
nutrient Symbol Peak wavelength (nm)
Nitrogen N -
Potassium K 766.491
Calcium Ca 616.217
Magnesium Mg 518.360
Phosphorus P -
Sulfur S -
Sodium Na 568.820
Iron Fe 259.940
Boron B 249.772
Manganese Mn 257.610
Zinc Zn 213.857
Copper Cu 324.754
Between(200-800)
Ref.
Determination of available nutrients in soil using the Agilent 4200 MP-AES
How it can be sense?
Electrochemical sensing that uses ion-
selective electrodes which generate a
voltage or current output in response
to the activity of selected ions.(i.e. ion
selective field effect transistor )
Optical sensing that uses reflectance
spectroscopy to detect the level of
energy absorbed/reflected by soil
particles and nutrient ions.
Electro chemical sensing Spectroscopy
5
Ref.
Testing/Monitoring of Soil Chemical Level Using Wireless Sensor Network Technology
Electrochemical sensors for soil nutrient detection: opportunity and challenge
By Sensing techniques for soil nutrients
Ref.
Soil Analysis Using Visible and Near Infrared Spectroscopy
https://www.youtube.com/watch?v=dkARLSQWHH8
6
Why Spectroscopy over Electrochemical ??
1.This is non-destructive measurement.
2. no need to take large no of soil sample.
3. Less time consuming
4. Very small amount of sample is required.
5. Cost effective in the long run.
https://www.youtube.com/watch?v=dkARLSQWHH8 7
What is Spectroscopy???
Spectroscopy :it is the study of interaction of
electromagnetic radiation with matter
Spectrometer: it is a tool which is use to look
indirectly at molecule.
Spectra: A plot of the color profile
(wavelength)
Interaction methodologies
There are two ways in which interaction between matter and radiation can take place
8https://www.youtube.com/watch?v=dkARLSQWHH8
Molecular spectra
9https://www.youtube.com/watch?v=vt3WO2rf9Qs
Three types of molecular spectra are present:
1. Rotational spectra
2. Vibration rotational spectra
3. Electronic band spectra
http://slideplayer.com/slide/9200362/
10
Electromagnetic wave
•Transport energy
•Electric and magnetic field oscillate:
that’s the “wave”.
•Moves at speed of light.
•Wavelength, frequency, energy all
related
c= speed of light(3*10^(8) m/s)
E= energy
λ = wavelength
𝛎= frequency
H=planck’s constant(4*10^(-15) eV sec)
Type of Spectroscopy
Spectroscopic methods are classified according to the resign of the electromagnetic
spectrum used or produced such as
11
Ref. Optical Sensing Methods for Assessment of Soil Macronutrients and other Properties for Application in Precision
Agriculture:: A review
UV region = 200-400nm
Visible range = 400-780nm
NIR = 780-2500nm
Method of sensing by Spectroscopy
 A soil testing program can be
divided into four main
components:
1. Soil sample preparations
2. Measurement
3. Reference analysis
4. Calibration
5. Validation
6. Predictions
12
Ref. Soil Analysis Using Visible and Near Infrared Spectroscopy
Detailed Methodology
13
Ref.
Soil Analysis Using Visible and Near Infrared Spectroscopy
Diagnostic Nutrient Testing
1. Soil sample preparations
• Use air or oven dried soil
• Grind soil to < 2 mm particle size
2.Measurement
•Sample preparation and handling:
1.Make sure that the sample is thoroughly mixed in the sample
container .
2. Soils are heterogeneous
3. Pack the containers the same way for all samples
4. If the same container is to be used for several samples it is
important to clean it
between samples.
•White and dark reference:
1. Depending on instrument, this may be done automatically,
however for some instruments it needs to be done manually.
Detailed Methodology
14
3. Pre treatment of spectra
•Average spectra of repeated vis-NIR scans on the same soil sample to
avoid using false replicates.
•Transform the measured reflectance to apparent absorption through
log(1/reflectance) to enhance the linearity.
•To enhance the more chemically related peaks and reduce effects
such as baseline shifts and overall curvature, it is often recommended
to employ some additional pre-processing transformation of the
spectra
4. Reference soil analyses
• The calibration statistics can never be better than the quality of the chemical
reference analyses. That is, errors related to the traditional chemical analysis to
which the spectra are correlated will be included in the calibration model.
• Make a statistical analysis of the soil data before using it for calibration.
15
Detailed Methodology
5. Calibration and validation
There are many different algorithms that can be used to calibrate soil vis–NIR
spectra to predict soil properties. They include
multiple linear regression (MLR),
principal component regression (PCR) and
Partial least squares regression (PLS)
6. Model assessment
There are several numerical measurements describing the performance of the
predictions. We recommend the use of the root mean squared error (RMSE), bias
(or mean error) and standard deviation of the error distribution (SDE) to account
for accuracy and imprecision of the predictions, and the ratio of performance to
deviation (RPD) for assessments across units:
Selection of Instrument depends on
16https://www.asdi.com/products-and-services/fieldspec-spectroradiometers/handheld-2-portable-spectroradiometer
What instrument to choose is largely
dependent on the application and
basically there is a trade-off between
price and performance.
•Resolution and noise
•Spectral range
•Flexibility
17
References
1. “Soil Analysis Using Visible and Near Infrared Spectroscopy”, Johanna Wetterlind, Bo Stenberg Swedish, University of
Agricultural Sciences.
2. “Testing/Monitoring of Soil Chemical Level Using Wireless Sensor Network Technology”, Purvi Mishra, Sudha Mapara
Arya Institue of Engineering and Technology, Jaipur.
3. “Optical Sensing Methods for Assessment of Soil Macronutrients and other Properties for Application in Precision
Agriculture A review” , Shakuntala Laskar, Department of Electrical and Electronics Engineering, School of Technology
Assam Don Bosco University, Guwahati.
4. “Soil Sampling and analysis”, J.L. Walworth.
5. “Nutrients Detection in the Soil: Review Paper”, Ashwini A. Chitragar, Sneha M. Vasi, Sujata Naduvinamani, Akshata
J. Katigar and Taradevi I. Hulasogi,Department of Instrumentation Technology, B V Bhoomaraddi College of
Engineering and Technology, Hubli, INDIA.
6. “Near infrared Spectroscopy technology for soil nutrients detection bsaed on LS-SVM”, Yandan Qioa,central for
popularization of agriculture machinary technlogy for shanxi provinece.
7. “Electrochemical sensors for soil nutrient detection: opportunity and challenge”, ianhan Lin, Maohua Wang , Miao
Zhang, Yane Zhang, Li ChenKey Laboratory of Modern Precision Agriculture System Integration, Ministry of Education,
Beijing, China.
8. “Diagnostic Nutrient Testing”, R.S. Mylavarapu.
9. “Determination of available nutrients in soil using the Agilent 4200 MP-AES”, Dharmendra Vummiti Agilent
Technologies, India
Thank you
18
19
20
21

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Spectroscopic sensing of soil nutrients

  • 1. Spectroscopic sensing of soil nutrients Presented By: Bhawana Singh Senior research fellow V1 Agrionics
  • 2. Content • Soil nutrients • Sensing techniques • Spectroscopy basics • Spectroscopy Types • Detailed methodology • Reference 2
  • 3. 16 most essential nutrients of soil. These nutrients can be classified as: 1. The primary macronutrients: nitrogen (N), phosphorus (P), potassium (K) 2. The secondary macronutrients: calcium (Ca), sulfur (S), magnesium (Mg) 3. The micronutrients: boron (B), chlorine (Cl), manganese (Mn), iron (Fe), zinc (Zn), copper (Cu),molybdenum (Mo), nickel (Ni) These nutrients are supplied by the soil and by the addition of fertilizers such as manure, compost, and fertilizer salts. What we want to sense? 3 Ref. Soil Sampling and analysis Soil Nutrients
  • 4. 4 Soil Nutrients nutrient Symbol Peak wavelength (nm) Nitrogen N - Potassium K 766.491 Calcium Ca 616.217 Magnesium Mg 518.360 Phosphorus P - Sulfur S - Sodium Na 568.820 Iron Fe 259.940 Boron B 249.772 Manganese Mn 257.610 Zinc Zn 213.857 Copper Cu 324.754 Between(200-800) Ref. Determination of available nutrients in soil using the Agilent 4200 MP-AES
  • 5. How it can be sense? Electrochemical sensing that uses ion- selective electrodes which generate a voltage or current output in response to the activity of selected ions.(i.e. ion selective field effect transistor ) Optical sensing that uses reflectance spectroscopy to detect the level of energy absorbed/reflected by soil particles and nutrient ions. Electro chemical sensing Spectroscopy 5 Ref. Testing/Monitoring of Soil Chemical Level Using Wireless Sensor Network Technology Electrochemical sensors for soil nutrient detection: opportunity and challenge By Sensing techniques for soil nutrients
  • 6. Ref. Soil Analysis Using Visible and Near Infrared Spectroscopy https://www.youtube.com/watch?v=dkARLSQWHH8 6 Why Spectroscopy over Electrochemical ?? 1.This is non-destructive measurement. 2. no need to take large no of soil sample. 3. Less time consuming 4. Very small amount of sample is required. 5. Cost effective in the long run.
  • 7. https://www.youtube.com/watch?v=dkARLSQWHH8 7 What is Spectroscopy??? Spectroscopy :it is the study of interaction of electromagnetic radiation with matter Spectrometer: it is a tool which is use to look indirectly at molecule. Spectra: A plot of the color profile (wavelength)
  • 8. Interaction methodologies There are two ways in which interaction between matter and radiation can take place 8https://www.youtube.com/watch?v=dkARLSQWHH8
  • 9. Molecular spectra 9https://www.youtube.com/watch?v=vt3WO2rf9Qs Three types of molecular spectra are present: 1. Rotational spectra 2. Vibration rotational spectra 3. Electronic band spectra
  • 10. http://slideplayer.com/slide/9200362/ 10 Electromagnetic wave •Transport energy •Electric and magnetic field oscillate: that’s the “wave”. •Moves at speed of light. •Wavelength, frequency, energy all related c= speed of light(3*10^(8) m/s) E= energy λ = wavelength 𝛎= frequency H=planck’s constant(4*10^(-15) eV sec)
  • 11. Type of Spectroscopy Spectroscopic methods are classified according to the resign of the electromagnetic spectrum used or produced such as 11 Ref. Optical Sensing Methods for Assessment of Soil Macronutrients and other Properties for Application in Precision Agriculture:: A review UV region = 200-400nm Visible range = 400-780nm NIR = 780-2500nm
  • 12. Method of sensing by Spectroscopy  A soil testing program can be divided into four main components: 1. Soil sample preparations 2. Measurement 3. Reference analysis 4. Calibration 5. Validation 6. Predictions 12 Ref. Soil Analysis Using Visible and Near Infrared Spectroscopy
  • 13. Detailed Methodology 13 Ref. Soil Analysis Using Visible and Near Infrared Spectroscopy Diagnostic Nutrient Testing 1. Soil sample preparations • Use air or oven dried soil • Grind soil to < 2 mm particle size 2.Measurement •Sample preparation and handling: 1.Make sure that the sample is thoroughly mixed in the sample container . 2. Soils are heterogeneous 3. Pack the containers the same way for all samples 4. If the same container is to be used for several samples it is important to clean it between samples. •White and dark reference: 1. Depending on instrument, this may be done automatically, however for some instruments it needs to be done manually.
  • 14. Detailed Methodology 14 3. Pre treatment of spectra •Average spectra of repeated vis-NIR scans on the same soil sample to avoid using false replicates. •Transform the measured reflectance to apparent absorption through log(1/reflectance) to enhance the linearity. •To enhance the more chemically related peaks and reduce effects such as baseline shifts and overall curvature, it is often recommended to employ some additional pre-processing transformation of the spectra 4. Reference soil analyses • The calibration statistics can never be better than the quality of the chemical reference analyses. That is, errors related to the traditional chemical analysis to which the spectra are correlated will be included in the calibration model. • Make a statistical analysis of the soil data before using it for calibration.
  • 15. 15 Detailed Methodology 5. Calibration and validation There are many different algorithms that can be used to calibrate soil vis–NIR spectra to predict soil properties. They include multiple linear regression (MLR), principal component regression (PCR) and Partial least squares regression (PLS) 6. Model assessment There are several numerical measurements describing the performance of the predictions. We recommend the use of the root mean squared error (RMSE), bias (or mean error) and standard deviation of the error distribution (SDE) to account for accuracy and imprecision of the predictions, and the ratio of performance to deviation (RPD) for assessments across units:
  • 16. Selection of Instrument depends on 16https://www.asdi.com/products-and-services/fieldspec-spectroradiometers/handheld-2-portable-spectroradiometer What instrument to choose is largely dependent on the application and basically there is a trade-off between price and performance. •Resolution and noise •Spectral range •Flexibility
  • 17. 17 References 1. “Soil Analysis Using Visible and Near Infrared Spectroscopy”, Johanna Wetterlind, Bo Stenberg Swedish, University of Agricultural Sciences. 2. “Testing/Monitoring of Soil Chemical Level Using Wireless Sensor Network Technology”, Purvi Mishra, Sudha Mapara Arya Institue of Engineering and Technology, Jaipur. 3. “Optical Sensing Methods for Assessment of Soil Macronutrients and other Properties for Application in Precision Agriculture A review” , Shakuntala Laskar, Department of Electrical and Electronics Engineering, School of Technology Assam Don Bosco University, Guwahati. 4. “Soil Sampling and analysis”, J.L. Walworth. 5. “Nutrients Detection in the Soil: Review Paper”, Ashwini A. Chitragar, Sneha M. Vasi, Sujata Naduvinamani, Akshata J. Katigar and Taradevi I. Hulasogi,Department of Instrumentation Technology, B V Bhoomaraddi College of Engineering and Technology, Hubli, INDIA. 6. “Near infrared Spectroscopy technology for soil nutrients detection bsaed on LS-SVM”, Yandan Qioa,central for popularization of agriculture machinary technlogy for shanxi provinece. 7. “Electrochemical sensors for soil nutrient detection: opportunity and challenge”, ianhan Lin, Maohua Wang , Miao Zhang, Yane Zhang, Li ChenKey Laboratory of Modern Precision Agriculture System Integration, Ministry of Education, Beijing, China. 8. “Diagnostic Nutrient Testing”, R.S. Mylavarapu. 9. “Determination of available nutrients in soil using the Agilent 4200 MP-AES”, Dharmendra Vummiti Agilent Technologies, India
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