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Groundnut improvement: use of genetic
and genomic tools
Janila P
ICRISAT,
Patancheru, India
IMOD: Innovate. Grow. Prosper.
Hunger report of FAO, 2012
Source: http://www.fao.org/infographics/pdf/FAO-infographic-SOFI-2012-en.pdf
Improve food availability and incomes of the poor
by enhancing their productive activities
IMOD: Innovate. Grow. Prosper.
Global groundnut area
 Oil
 Food uses
 Cash crop
 Nutritious
 24 m ha
 36.5 m t production
IMOD: Innovate. Grow. Prosper.
Form http://www.nutriset.fr/en/product-range/produit-par-produit/plumpy-nut-ready-to-use-therapeutic-food-rutf.html
IMOD: Innovate. Grow. Prosper.
Groundnut research at ICRISAT
1980
New improved varieties of
groundnut are an important
and cost effective solution
Out line
Defining objectives
Breeder’s tool kit
1. Genetic variability
2. Genetic nature and trait association
3. Breeding methods
4. Phenotyping tools
5. Genomic tools
6. Participatory breeding
IMOD developmental pathway
Challenges – nutrition & aflatoxin
Summary
IMOD: Innovate. Grow. Prosper.
Groundnut breeding
objectives ……
• Dynamic challenges of production and adaptation
• Preferences of farmers, traders, millers,
processors and consumers
• Nutrition
• IMOD development pathway
• Gender
• Yield gap
IMOD: Innovate. Grow. Prosper.
Groundnut yieldvaries from 300to 5600Kg ha-1
acrossthe growing regionsof the world
IMOD: Innovate. Grow. Prosper.
Plugging the yield gap is important
New improved genotypes
ICM technologies, inputs,
mechanization etc.
Technology delivery
IMOD: Innovate. Grow. Prosper.
Tool kit
Janila et al (2013) Frontiers in Plant Science.
IMOD: Innovate. Grow. Prosper.
• Available variability
cultivated species ()
wild species ()
• Induced variability
• Interspecific hybridization
• Gene banks and breeding programs
Single hybridization
event followed by
chromosome doubling
Crossing barriers
- ploidy
differences
(1) Genetic variability
IMOD: Innovate. Grow. Prosper.
(2a) Trait genetics – hold the
torch
Janila et al (2013). Euphytica. (doi:10.1007/s10681-013-0881-7)
Genetic nature of LLS resistance
• Nuclear and maternal effects
• Field measured traits had high heritability
compared to lab measured traits for resistance
• Early-generation selection may not be
rewarding
IMOD: Innovate. Grow. Prosper.
(2b) Trait associations
Pod yield - mature pods & kernels
shelling outturn
100-seed mass
primary and secondary branches
harvest index
Water-use-efficiency (WUE) -
SPAD chlorophyll meter reading (SCMR)
Specific leaf area (SLA)
IMOD: Innovate. Grow. Prosper.
(3a) Breeding methods
• Introduction and Mass selection
 JL 24 is selection from EC 94943, introduced from
Taiwan (Patil et al. 1980)
• Mutations
 TMV 10, TG 1, TG 3, TG17, TG 38, Somnath, G 201,
BG 1, BG 2, MH 2
 15% of new groundnut varieties (Qui et al., 1998).
IMOD: Innovate. Grow. Prosper.
(3b) Breeding methods
Hybridization and selection
Pedigree
Bulk-pedigree
Single seed descent method
Backcross
IMOD: Innovate. Grow. Prosper.
(3c) Untiring efforts….
Groundnut hybridization block
IMOD: Innovate. Grow. Prosper.
(4a) Phenotyping tools – foliar
fungal diseases
Detached leaf techniqueField screening technique
Disease score on 1-9 scale, 1 = no disease, and 9 = 81-
100% foliage destroyed (Subrahmanyam et al 1983)
IMOD: Innovate. Grow. Prosper.
(4b) Phenotyping tools – drought tolerance
Screening of high oil lines under water stress during
2011/12 postrainy season at ICRISAT, Patancheru
• Empirical approach
• Trait based approach
Recording of SCMR in progress
Janila and Nigam (2013) Springer Pub., USA (in press)
IMOD: Innovate. Grow. Prosper.
(4c) Robust phenotyping tools
NIRS (near infrared reflectance spectroscopy) – robust, non-destructive and
rapid method of estimation for oil, protein and fatty acid content
IMOD: Innovate. Grow. Prosper.
(5a) Genomic tools
• NemaTAM (Simpson et al., 2003)
• Tifguard High O/L (Chu et al., 2011)
• The uptake in developed countries is contrasting with that in
developing countries such as, India and African countries.
• New emerging tools – happening at a fast pace
IMOD: Innovate. Grow. Prosper.
(5b) MABC for rust resistance
Introgression lines, ICGV 91114 (left pink tag ) and GBPD 4 (right pink tag)
in rust screening nursery at 90 DAS (2012 rainy season ICRISAT Patancheru)
ICGV 91114 ICGV 91114 GPBD 4
(recurrent parent) (QTL for rust resistance) (donor parent)
(5b)Rust score of MABC derived lines
Parents Rust score
at 75 DAP *
Rust score
at 90 DAP
Rust score at
harvest
GPBD 4 1 2 3
ICGV 91114 3 5 9
JL 24 3 5 9
TAG 24 2 5 9
Replicated disease screening nursery during 2012 rainy season at ICRISAT,
Patancheru; * mean of two replications
Cross Number of
lines
evaluated *
Lines with mean
disease score of 2 *
ICGV 91114 x GPBD 4 57 25
JL 24 x GPBD 4 69 23
TAG 24 x GPBD 4 103 29
IMOD: Innovate. Grow. Prosper.
(5c) MABC in progress
High O/L ratio for oil quality
Gene pyramiding for rust
and late leaf spot resistance
IMOD: Innovate. Grow. Prosper.
(6) Participatory breeding
IMOD: Innovate. Grow. Prosper.
Amalgamation of Past
and present
competencies to find
solutions of the future
IMOD developmental pathway
IMOD: Innovate. Grow. Prosper.
Seeding growth of seed stored for one year under room
temperature conducted at ICRISAT, Patancheru (2011-2012)
?’s for commercialization of
high oil groundnut varieties
No association between seed viability
with kernel oil content(r=-0.22)
• Narasimham et al (1985). Journal Article No. 21 of ICRISAT.
• Janila et al (2013) (under preparation)
Market?
Seed viability?
IMOD: Innovate. Grow. Prosper.
Farmers oriented to markets
ILRI study - use of ICGV 91114 haulm
fodder enhanced milk yield by 11%
• Nigam SN, Blummel M. Animal Nutrition and Feed Technology 2010;10S:39-48.
• Prasad VL et al (2006). International Conference on social science perspectives in
agricultural Research and development, Feb 15-18, 2006 ,New Delhi, India.
• Protein (8-15% )
• Minerals (9-17%)
• Genetic variability
• No inverse relation
IMOD: Innovate. Grow. Prosper.
Dual purpose genotypes
Addressing nutrition …..
Groundnut with maize grown for home
consumption or for local market as fresh
pods (Nawada district, Bihar, 2012)
Aflatoxin contamination
IMOD: Innovate. Grow. Prosper.
Summary
IMOD: Innovate. Grow. Prosper.
Conventional breeding
procedures with
phenotyping tools have
contributed to release of
several improved
varieties of groundnut
world over
138 ICRISATbred groundnutvarieties were
released in36 countriesof Asia and Africa
IMOD: Innovate. Grow. Prosper.
New improved varieties are an
important part of the solution, but ..
• ICM practices
• Seed systems
• Partnerships
• Policies
• Input delivery
• Mechanization
• Credit facilities
• Institutions The former Chief Minister of Andhra Pradesh, late Dr YS Rajasekhara Reddy
hands over the ICGV 91114 seeds to Anantapur farmers on 1 June 2006. He is
flanked by Director General Dar (on his right), and Mr N Raghuveera Reddy,
Agriculture Minister
IMOD: Innovate. Grow. Prosper.
Acknowledgements:
HD Upadhyaya
SN Nigam (till June 2012)
RK Varshney
HK Sudini
Vincent V
Rathore A
Nagesh P ,
Manish K Pandey
Nalini M
Surendra SM
Papaiah
Yadagiri (bada & chota)
Kaleem
Nawaz
& team
Acknowledgements:
Groundnut farmers
Partners
Thank you

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Groundnut improvement: Use of genetic and genomic tools

  • 1. Groundnut improvement: use of genetic and genomic tools Janila P ICRISAT, Patancheru, India IMOD: Innovate. Grow. Prosper.
  • 2. Hunger report of FAO, 2012 Source: http://www.fao.org/infographics/pdf/FAO-infographic-SOFI-2012-en.pdf Improve food availability and incomes of the poor by enhancing their productive activities IMOD: Innovate. Grow. Prosper.
  • 3. Global groundnut area  Oil  Food uses  Cash crop  Nutritious  24 m ha  36.5 m t production IMOD: Innovate. Grow. Prosper.
  • 5. Groundnut research at ICRISAT 1980 New improved varieties of groundnut are an important and cost effective solution
  • 6. Out line Defining objectives Breeder’s tool kit 1. Genetic variability 2. Genetic nature and trait association 3. Breeding methods 4. Phenotyping tools 5. Genomic tools 6. Participatory breeding IMOD developmental pathway Challenges – nutrition & aflatoxin Summary IMOD: Innovate. Grow. Prosper.
  • 7. Groundnut breeding objectives …… • Dynamic challenges of production and adaptation • Preferences of farmers, traders, millers, processors and consumers • Nutrition • IMOD development pathway • Gender • Yield gap IMOD: Innovate. Grow. Prosper.
  • 8. Groundnut yieldvaries from 300to 5600Kg ha-1 acrossthe growing regionsof the world IMOD: Innovate. Grow. Prosper.
  • 9. Plugging the yield gap is important New improved genotypes ICM technologies, inputs, mechanization etc. Technology delivery IMOD: Innovate. Grow. Prosper.
  • 10. Tool kit Janila et al (2013) Frontiers in Plant Science. IMOD: Innovate. Grow. Prosper.
  • 11. • Available variability cultivated species () wild species () • Induced variability • Interspecific hybridization • Gene banks and breeding programs Single hybridization event followed by chromosome doubling Crossing barriers - ploidy differences (1) Genetic variability IMOD: Innovate. Grow. Prosper.
  • 12. (2a) Trait genetics – hold the torch Janila et al (2013). Euphytica. (doi:10.1007/s10681-013-0881-7) Genetic nature of LLS resistance • Nuclear and maternal effects • Field measured traits had high heritability compared to lab measured traits for resistance • Early-generation selection may not be rewarding IMOD: Innovate. Grow. Prosper.
  • 13. (2b) Trait associations Pod yield - mature pods & kernels shelling outturn 100-seed mass primary and secondary branches harvest index Water-use-efficiency (WUE) - SPAD chlorophyll meter reading (SCMR) Specific leaf area (SLA) IMOD: Innovate. Grow. Prosper.
  • 14. (3a) Breeding methods • Introduction and Mass selection  JL 24 is selection from EC 94943, introduced from Taiwan (Patil et al. 1980) • Mutations  TMV 10, TG 1, TG 3, TG17, TG 38, Somnath, G 201, BG 1, BG 2, MH 2  15% of new groundnut varieties (Qui et al., 1998). IMOD: Innovate. Grow. Prosper.
  • 15. (3b) Breeding methods Hybridization and selection Pedigree Bulk-pedigree Single seed descent method Backcross IMOD: Innovate. Grow. Prosper.
  • 16. (3c) Untiring efforts…. Groundnut hybridization block IMOD: Innovate. Grow. Prosper.
  • 17. (4a) Phenotyping tools – foliar fungal diseases Detached leaf techniqueField screening technique Disease score on 1-9 scale, 1 = no disease, and 9 = 81- 100% foliage destroyed (Subrahmanyam et al 1983) IMOD: Innovate. Grow. Prosper.
  • 18. (4b) Phenotyping tools – drought tolerance Screening of high oil lines under water stress during 2011/12 postrainy season at ICRISAT, Patancheru • Empirical approach • Trait based approach Recording of SCMR in progress Janila and Nigam (2013) Springer Pub., USA (in press) IMOD: Innovate. Grow. Prosper.
  • 19. (4c) Robust phenotyping tools NIRS (near infrared reflectance spectroscopy) – robust, non-destructive and rapid method of estimation for oil, protein and fatty acid content IMOD: Innovate. Grow. Prosper.
  • 20. (5a) Genomic tools • NemaTAM (Simpson et al., 2003) • Tifguard High O/L (Chu et al., 2011) • The uptake in developed countries is contrasting with that in developing countries such as, India and African countries. • New emerging tools – happening at a fast pace IMOD: Innovate. Grow. Prosper.
  • 21. (5b) MABC for rust resistance Introgression lines, ICGV 91114 (left pink tag ) and GBPD 4 (right pink tag) in rust screening nursery at 90 DAS (2012 rainy season ICRISAT Patancheru) ICGV 91114 ICGV 91114 GPBD 4 (recurrent parent) (QTL for rust resistance) (donor parent)
  • 22. (5b)Rust score of MABC derived lines Parents Rust score at 75 DAP * Rust score at 90 DAP Rust score at harvest GPBD 4 1 2 3 ICGV 91114 3 5 9 JL 24 3 5 9 TAG 24 2 5 9 Replicated disease screening nursery during 2012 rainy season at ICRISAT, Patancheru; * mean of two replications Cross Number of lines evaluated * Lines with mean disease score of 2 * ICGV 91114 x GPBD 4 57 25 JL 24 x GPBD 4 69 23 TAG 24 x GPBD 4 103 29 IMOD: Innovate. Grow. Prosper.
  • 23. (5c) MABC in progress High O/L ratio for oil quality Gene pyramiding for rust and late leaf spot resistance IMOD: Innovate. Grow. Prosper.
  • 24. (6) Participatory breeding IMOD: Innovate. Grow. Prosper. Amalgamation of Past and present competencies to find solutions of the future
  • 25. IMOD developmental pathway IMOD: Innovate. Grow. Prosper.
  • 26. Seeding growth of seed stored for one year under room temperature conducted at ICRISAT, Patancheru (2011-2012) ?’s for commercialization of high oil groundnut varieties No association between seed viability with kernel oil content(r=-0.22) • Narasimham et al (1985). Journal Article No. 21 of ICRISAT. • Janila et al (2013) (under preparation) Market? Seed viability? IMOD: Innovate. Grow. Prosper.
  • 27. Farmers oriented to markets ILRI study - use of ICGV 91114 haulm fodder enhanced milk yield by 11% • Nigam SN, Blummel M. Animal Nutrition and Feed Technology 2010;10S:39-48. • Prasad VL et al (2006). International Conference on social science perspectives in agricultural Research and development, Feb 15-18, 2006 ,New Delhi, India. • Protein (8-15% ) • Minerals (9-17%) • Genetic variability • No inverse relation IMOD: Innovate. Grow. Prosper. Dual purpose genotypes
  • 28. Addressing nutrition ….. Groundnut with maize grown for home consumption or for local market as fresh pods (Nawada district, Bihar, 2012) Aflatoxin contamination IMOD: Innovate. Grow. Prosper.
  • 30. Conventional breeding procedures with phenotyping tools have contributed to release of several improved varieties of groundnut world over 138 ICRISATbred groundnutvarieties were released in36 countriesof Asia and Africa IMOD: Innovate. Grow. Prosper.
  • 31. New improved varieties are an important part of the solution, but .. • ICM practices • Seed systems • Partnerships • Policies • Input delivery • Mechanization • Credit facilities • Institutions The former Chief Minister of Andhra Pradesh, late Dr YS Rajasekhara Reddy hands over the ICGV 91114 seeds to Anantapur farmers on 1 June 2006. He is flanked by Director General Dar (on his right), and Mr N Raghuveera Reddy, Agriculture Minister IMOD: Innovate. Grow. Prosper.
  • 32. Acknowledgements: HD Upadhyaya SN Nigam (till June 2012) RK Varshney HK Sudini Vincent V Rathore A Nagesh P , Manish K Pandey Nalini M Surendra SM Papaiah Yadagiri (bada & chota) Kaleem Nawaz & team Acknowledgements: Groundnut farmers Partners