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Atoms 2013, 1, 14-16; doi:10.3390/atoms1030014
OPEN ACCESS

atoms
ISSN 2218-2004
www.mdpi.com/journal/atoms
Editorial

Notes on Critical Assessment of Theoretical Calculations of
Atomic Structure and Transition Probabilities
Hyun-Kyung Chung 1,*, Per Jönsson 2 and Alexander Kramida 3
1

2

3

International Atomic Energy Agency, Atomic and Molecular Data Unit, Nuclear Data Section,
Vienna, Austria; E-mail: h.chung@iaea.org
School of Technology, Applied Mathematics Group, Malmö University, Malmö, Sweden;
E-mail: per.jonsson@mah.se
Atomic Spectroscopy Group, Quantum Measurement Laboratory, National Institute of Standards
and Technology, Gaithersburg, MD, USA; Email: alexander.kramida@nist.gov

* Author to whom correspondence should be addressed; Tel.: +43-1-2600-21729; Fax: +43-1-26007.
Received: 29 July 2013 / Accepted: 29 July 2013 / Published: 8 August 2013

Abstract: Atomic structure and transition probabilities are fundamental physical data
required in many fields of science and technology. Atomic physics codes are freely
available to other community users to generate atomic data for their interest, but the quality
of these data is rarely verified. This special issue addresses estimation of uncertainties in
atomic structure and transition probability calculations, and discusses methods and
strategies to assess and ensure the quality of theoretical atomic data.
Keywords: atomic structure; atomic transition probability; data evaluation

1. Introduction
Atomic structure and transition probabilities are widely used in many diverse fields of science and
technology, from atomic spectroscopy for diagnostics to modelling of exotic matter states generated in
laboratory experiments or in astrophysical objects. Many applications require extensive sets of atomic
structure and transition probability data beyond a few strongest lines accessible by measurements. Due
to great advances in computational capabilities and computational atomic physics, there are codes
available in the community that allow a complete set of atomic data to be generated without an heroic
effort. While a demand to obtain atomic data is readily met with data from available codes, the quality
Atoms 2013, 1

15

of data is difficult to assess for a user without much knowledge of atomic physics. In most cases, the
user-generated data is unlikely to be verified by experts, and may lead to unsatisfactory results.
The need for data verification is even greater as applications of atomic data become more elaborate
and complex, and hence require higher quality data. A list of critically evaluated atomic structure and
transition probabilities data exists in the databases of the National Institute of Standards and
Technology (NIST, Gaithersburg, MD, USA) [1], although thus far in a rather limited volume.
Recently, there has been an effort to enhance community activities in evaluating, and critically
assessing atomic and molecular data for applications [2,3]. Critical evaluation of data is challenging,
since only a limited number of benchmark experiments exist and one has to rely heavily on theoretical
estimates. In particular, theoretical data are rarely provided with uncertainty estimates, which makes an
evaluation of theoretical data even more difficult.
It is not immediately obvious how to give a quantitative estimate of the uncertainty of a
theoretically or numerically obtained value. There seems to be no straightforward answer or recipe;
however, it is important for code developers and users to identify sources of uncertainties in their code
results and develop ways to ensure the quality of numerically generated data. With this special issue,
we would like to address ways to estimate uncertainties of calculated atomic structure and transition
probabilities, and assure the quality of theoretical atomic data.
2. Ideas and Suggestions
Uncertainty estimates of theoretical atomic data depend on the complexity of the atomic system,
computational methods, and the number of different states. Calculations for a few states and
“spectrum” calculations for massive sets of transition data should be different.
The wave function for a state in multi-configuration methods is expanded in configuration state
functions (CSFs), which are symmetry adapted and anti-symmetrized products of one-electron orbitals.
Given approximate wave functions for the initial and final states, transition parameters such as line
strengths, can be evaluated in length and velocity gauges (or Babushkin and Coulomb gauges in
relativistic calculations). Differences between the transition parameters calculated in the different
gauges can be used as uncertainty estimates. For LS-allowed transitions Froese Fischer suggested [4]
that the uncertainty δA' in a transition rate A' may be estimated by
δA' = (δE + δS) A',

(1)

δE = |E(obs) – E(cal)|/E(obs)

(2)

δS = |S(length) – S(velocity)|/max(S(length); S(velocity))

(3)

where

and

are, respectively, the uncertainties in the transition energy and line strength. The above uncertainty
estimate cannot directly be applied to LS-forbidden transitions. Different generalizations are,
however, possible.
The uncertainties of transition data may also be inferred from convergence studies. A model for
generating CSFs from the one-electron orbital basis may be defined and the one-electron orbital basis
Atoms 2013, 1

16

can be increased in a systematic way to monitor the convergence of the transition parameters.
Converged values may be obtained with several models of different electron correlation effects, and
uncertainties may be estimated for the convergence of transition parameters within each model as well
as between models. The limitation for this study would be the rapid growth of the number of CSFs,
which makes it difficult to establish converged values for some cases. It would be difficult to give an
estimate for systems beyond models that account for valence and core-valence correlation.
The wave functions may be “fine-tuned” by shifting diagonal elements in the Hamiltonian to
reproduce the measured energy separations. In some cases the sensitivity of the transition parameters
to the tuning may be used for estimating uncertainties. This method is not available, however, for fully
relativistic calculations in jj-coupling, where off-diagonal elements in the Hamiltonian matrix may
be large.
For “spectrum” calculations, internal benchmarking can be applied to estimate uncertainties.
Internal benchmarking amounts to performing very accurate and elaborate calculations for a few
carefully selected transitions. The results from the less accurate “spectrum calculation” are then
compared against values from the internal reference transitions for uncertainty estimates.
3. Summary
The need for critical assessment of theoretical calculations of atomic structure and transition
probabilities, and some suggestions, are presented.
Conflict of Interest
The authors declare no conflict of interest.
References and Notes
1.

2.

3.

4.

Kramida, A.; Ralchenko, Yu.; Reader, J.; NIST ASD Team. NIST Atomic Spectra Database
(version 5.0); National Institute of Standards and Technology: Gaithersburg, MD, USA, 2012.
Available at http://physics.nist.gov/asd (accessed on 27 June 2013).
Chung, H.-K.; Braams, B. J. IAEA coordinated activities on evaluation of atomic, molecular, and
plasma-surface interaction data for fusion applications. Fusion Science and Technology 2013, 63,
413–417.
Chung, H.-K. International Nuclear Data Committee report-0637. International Code Centres
Network. 3rd Technical Meeting. International Atomic Energy Agency: Vienna, Austria, 21
June 2013.
Froese Fischer, C. Evaluating the accuracy of theoretical transition data, Physica Scripta 2009,
T134, 014019.

© 2013 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article
distributed under the terms and conditions of the Creative Commons Attribution license
(http://creativecommons.org/licenses/by/3.0/).

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Atoms 01-00014

  • 1. Atoms 2013, 1, 14-16; doi:10.3390/atoms1030014 OPEN ACCESS atoms ISSN 2218-2004 www.mdpi.com/journal/atoms Editorial Notes on Critical Assessment of Theoretical Calculations of Atomic Structure and Transition Probabilities Hyun-Kyung Chung 1,*, Per Jönsson 2 and Alexander Kramida 3 1 2 3 International Atomic Energy Agency, Atomic and Molecular Data Unit, Nuclear Data Section, Vienna, Austria; E-mail: h.chung@iaea.org School of Technology, Applied Mathematics Group, Malmö University, Malmö, Sweden; E-mail: per.jonsson@mah.se Atomic Spectroscopy Group, Quantum Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA; Email: alexander.kramida@nist.gov * Author to whom correspondence should be addressed; Tel.: +43-1-2600-21729; Fax: +43-1-26007. Received: 29 July 2013 / Accepted: 29 July 2013 / Published: 8 August 2013 Abstract: Atomic structure and transition probabilities are fundamental physical data required in many fields of science and technology. Atomic physics codes are freely available to other community users to generate atomic data for their interest, but the quality of these data is rarely verified. This special issue addresses estimation of uncertainties in atomic structure and transition probability calculations, and discusses methods and strategies to assess and ensure the quality of theoretical atomic data. Keywords: atomic structure; atomic transition probability; data evaluation 1. Introduction Atomic structure and transition probabilities are widely used in many diverse fields of science and technology, from atomic spectroscopy for diagnostics to modelling of exotic matter states generated in laboratory experiments or in astrophysical objects. Many applications require extensive sets of atomic structure and transition probability data beyond a few strongest lines accessible by measurements. Due to great advances in computational capabilities and computational atomic physics, there are codes available in the community that allow a complete set of atomic data to be generated without an heroic effort. While a demand to obtain atomic data is readily met with data from available codes, the quality
  • 2. Atoms 2013, 1 15 of data is difficult to assess for a user without much knowledge of atomic physics. In most cases, the user-generated data is unlikely to be verified by experts, and may lead to unsatisfactory results. The need for data verification is even greater as applications of atomic data become more elaborate and complex, and hence require higher quality data. A list of critically evaluated atomic structure and transition probabilities data exists in the databases of the National Institute of Standards and Technology (NIST, Gaithersburg, MD, USA) [1], although thus far in a rather limited volume. Recently, there has been an effort to enhance community activities in evaluating, and critically assessing atomic and molecular data for applications [2,3]. Critical evaluation of data is challenging, since only a limited number of benchmark experiments exist and one has to rely heavily on theoretical estimates. In particular, theoretical data are rarely provided with uncertainty estimates, which makes an evaluation of theoretical data even more difficult. It is not immediately obvious how to give a quantitative estimate of the uncertainty of a theoretically or numerically obtained value. There seems to be no straightforward answer or recipe; however, it is important for code developers and users to identify sources of uncertainties in their code results and develop ways to ensure the quality of numerically generated data. With this special issue, we would like to address ways to estimate uncertainties of calculated atomic structure and transition probabilities, and assure the quality of theoretical atomic data. 2. Ideas and Suggestions Uncertainty estimates of theoretical atomic data depend on the complexity of the atomic system, computational methods, and the number of different states. Calculations for a few states and “spectrum” calculations for massive sets of transition data should be different. The wave function for a state in multi-configuration methods is expanded in configuration state functions (CSFs), which are symmetry adapted and anti-symmetrized products of one-electron orbitals. Given approximate wave functions for the initial and final states, transition parameters such as line strengths, can be evaluated in length and velocity gauges (or Babushkin and Coulomb gauges in relativistic calculations). Differences between the transition parameters calculated in the different gauges can be used as uncertainty estimates. For LS-allowed transitions Froese Fischer suggested [4] that the uncertainty δA' in a transition rate A' may be estimated by δA' = (δE + δS) A', (1) δE = |E(obs) – E(cal)|/E(obs) (2) δS = |S(length) – S(velocity)|/max(S(length); S(velocity)) (3) where and are, respectively, the uncertainties in the transition energy and line strength. The above uncertainty estimate cannot directly be applied to LS-forbidden transitions. Different generalizations are, however, possible. The uncertainties of transition data may also be inferred from convergence studies. A model for generating CSFs from the one-electron orbital basis may be defined and the one-electron orbital basis
  • 3. Atoms 2013, 1 16 can be increased in a systematic way to monitor the convergence of the transition parameters. Converged values may be obtained with several models of different electron correlation effects, and uncertainties may be estimated for the convergence of transition parameters within each model as well as between models. The limitation for this study would be the rapid growth of the number of CSFs, which makes it difficult to establish converged values for some cases. It would be difficult to give an estimate for systems beyond models that account for valence and core-valence correlation. The wave functions may be “fine-tuned” by shifting diagonal elements in the Hamiltonian to reproduce the measured energy separations. In some cases the sensitivity of the transition parameters to the tuning may be used for estimating uncertainties. This method is not available, however, for fully relativistic calculations in jj-coupling, where off-diagonal elements in the Hamiltonian matrix may be large. For “spectrum” calculations, internal benchmarking can be applied to estimate uncertainties. Internal benchmarking amounts to performing very accurate and elaborate calculations for a few carefully selected transitions. The results from the less accurate “spectrum calculation” are then compared against values from the internal reference transitions for uncertainty estimates. 3. Summary The need for critical assessment of theoretical calculations of atomic structure and transition probabilities, and some suggestions, are presented. Conflict of Interest The authors declare no conflict of interest. References and Notes 1. 2. 3. 4. Kramida, A.; Ralchenko, Yu.; Reader, J.; NIST ASD Team. NIST Atomic Spectra Database (version 5.0); National Institute of Standards and Technology: Gaithersburg, MD, USA, 2012. Available at http://physics.nist.gov/asd (accessed on 27 June 2013). Chung, H.-K.; Braams, B. J. IAEA coordinated activities on evaluation of atomic, molecular, and plasma-surface interaction data for fusion applications. Fusion Science and Technology 2013, 63, 413–417. Chung, H.-K. International Nuclear Data Committee report-0637. International Code Centres Network. 3rd Technical Meeting. International Atomic Energy Agency: Vienna, Austria, 21 June 2013. Froese Fischer, C. Evaluating the accuracy of theoretical transition data, Physica Scripta 2009, T134, 014019. © 2013 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).