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U.S. Department of the Interior
U.S. Geological Survey Frank Velasquez / Kristina Yamamoto
GIS in the Rockies
24 September 2015
Point Spacing and Pixel Size
Agenda
 Objective
 Literature
 Alpha Table
 Concept of Operations
 Study Areas
 Point Clouds
 Process Flow
 RMSE Results
 Charts
 Discussions
Objective
• Attempt to fill in the literature surrounding the optimal
point space (DEMpost space)
• For a given nominal point space (nps) distance (or
point density) of a lidar point cloud, what is the
optimal grid resolution without overly interpolating
pixels or losing data quality
• i.e. What is the scalar to apply to nps to achieve
optimal DEMpost spacing
• α = nps ÷ DEMpost
• Empirical research problem
• Experimental design is complete
• Execution of the designed tests are (mostly) complete
• Analysis of results is ongoing
Literature
• Rees and Arnold (2007) created a 2m raster grid from a 0.8 m nps
• Hopkinson et al. (2009) had varying nps between 1 and 4m and created
two DEMs; one at 5m and one at 25m
• Perroy et al. (2010) created a raster grid at resolution equal to the nps
• Gonzalez et al. (2010) suggest creating a grid of 2m or 5m from a 1m
nominal point spacing
• Jones et al. (2010) used a 2m resolution grid from a 1.6m nps
• Dong et al. (2010) suggested a raster resolution of one-third to one-fifth the
nps; i.e. of 3 to 5m, raster resolution would be 1m
• Long et al. (2011) contradicts (or inverted) this suggesting that for spacing
you would construct a 3m resolution grid.
• Keith Clarke (UCSB) suggested a DEMpost of 2 times the min, max, mean,
or median of the nearest neighbor interpoint spacing
Alpha Table
Technique No. Name Formula NPS Alpha DEM Post
(cell size m2)
1 Nyquist-Shannon * p ≤ (h-bar [sub ij]/2)
2 Finn et al. (2012) 1.4 .90 1.6
3a Clarke min * DEM Post = 2 x spacing min
3b Clarke max * DEM Post = 2 x spacing max
3c Clarke mean * DEM Post = 2 x spacing mean
3d Clarke median * DEM Post = 2 x spacing median
4 Rees and Arnold (2007) 0.8 .40 2.0
5a Hopkinson et al. (2009) 1.0 .20 5.0
5b Hopkinson et al. (2009) 4.0 .16 25.0
5c Hopkinson et al (2009) 4.0 .80 5.0
6 Perroy et al. (2010) 1.5 1.0 1.5
7a Gonzalez et al. (2010) 1.0 .50 2.0
7b Gonzalez et al (2010) Same as 5a 1.0 .20 5.0
8 Jones et al (2010) Same as 5c 1.6 .80 2.0
9a Dong et al. (2010) 3.0 3.0 1.0
9b Dong et al (2010) 5.0 5.0 1.0
10 Long et al. (2011) 1.0 .33 3.0
11 Heideman 2.0 .67 3.0
* Postgres/PostGIS algorithm developed by Mike Gleason of NREL to calculate nearest neighbor
All other alphas were derived from the literature (α = nps ÷ DEMpost)
Concept of Operations
Raw point
cloud
Filter ground
points
Reclassify ~5%
of points for
control group
Generate DEM
Ground
points
Generate
shapefile of
control points
ShapefileDEM
Compare DEM
to shapefile,
calculate Δz
Reclassified
point cloud
Output csv
& generate
charts
Great Smoky Mtn. Study Area
Grand Canyon Study Area
Great Smoky Mtn. Point Clouds
All Points Ground Points Control Points
5,614,743 879,891 46,210 (5.25%)
Grand Canyon Point Clouds
All Points Ground Points Control Points
37,975,517 12,003,692 558,699 (4.65%)
Process Flow
• LP360 to filter ground points from raw point cloud (Kim Mantey)
• lasthin to filter/reclassify ~5% control points
• ArcMap to create las dataset, calculate point statistics, verify reclassified point %
• las2shp to generate shapefile of control points
• Global Mapper to generate GeoTIFF DEM at various grid resolutions
• ArcMap to verify DEM grid size
• Global Mapper to compare DEM pixel z values to control group z values
 Select all points in shapefile
 Rename “elevation” attribute to “point elevation”
 Add coordinates attributes to control points
 Apply elevation attributes from terrain layer (DEM) to control points
 Verify points now have two elevation attributes
 Calculate elevation delta
 Create a new attribute (“elevation delta”)
 Subtract “elevation” from “point elevation”
 Generate statistics report (included slope attributes for possible future
analysis)
 Calculate RMSE and generate charts
Great Smoky Mtn.
Technique No. Name Alpha DEM Post (Cell size m2) Columns and Rows RMSE
1 Nyquist-Shannon * .599 1.15 1305 x1305 0.35286
2 Finn et al. .90 .7667 1957 x 1957 0.19809
3a Clarke min * 3.383 .2039 7356 x 7356 0.17018
3b Clarke max * .077 8.9833 167 x 167 1.08971
3c Clarke mean * .288 2.3964 626 x 626 0.53171
3d Clarke median * .285 2.4252 619 x 619 0.54222
4 Rees and Arnold .40 1.725 870 x 870 0.47653
5a Hopkinson et al. .20 3.45 435 x 435 0.80557
5b Hopkinson et al. .16 4.3125 348 x 348 1.06316
5c Hopkinson et al. .80 .8625 1740 x 1740 0.18409
6 Perroy et al. 1.0 .69 2174 x 2174 0.18965
7a Gonzalez et al. .50 1.38 1087 x 1087 0.35112
9a Dong et al. 3.0 .23 6523 x 6523 0.17358
9b Dong et al. 5.0 .1380 10872 x 10872 0.17227
10 Long et al. .33 2.0909 718 x 718 0.59202
11 Heideman .67 1.0299 1457 x 1457 0.34911
Yamamoto .069 10.0 150 x 150 1.10687
1 meter cell .69 1.0 1500 x 1500 0.33047
• NPS .69
• Gonzalez 7b alpha same as Hopkinson 5a
• Jones 8 alpha same as Hopkinson 5c
* Gleason algorithm nearest neighbor results:
Min: 0.1019 m Mean: 1.1982 m
Max: 4.4916 m Median: 1.2126 m
Grand Canyon
Technique No. Name Alpha DEM Post (Cell size m2) Columns and Rows RMSE
2 Finn et al. .90 .3522 4259 x 4259 0.0890
4 Rees and Arnold .40 .7925 1893 x 1893 0.6000
5a Hopkinson .20 1.59 943 x 943 0.9363
5b Hopkinson .16 1.9813 757 x 757 0.9603
5c Hopkinson .80 .3963 3785 x 3785 0.4815
6 Perroy et al. 1.0 .317 4688 x 4688 0.3395
7a Gonzalez et al. .50 .63 2381 x 2381 0.4714
9a Dong et al. 3.0 .11 13638 x 13638 0.3430
9b Dong et al. 5.0 0.0634 23662 x 23662 0.3456
10 Long et al. .33 .9606 1562 x 1562 0.6401
11 Heideman .67 .4731 3171 x 3171 0.4699
Yamamoto .069 10.0 150 x 150 1.5501
1 meter cell .69 1.0 1500 x 1500 0.6350
• NPS .317 (Reported point density 9.97m2)
• Nyquist-Shannon and Clarke inter-point spacing data unavailable at this time
• Gonzalez 7b alpha same as Hopkinson 5a
• Jones 8 alpha same as Hopkinson 5c
Great Smoky Mtn. Alpha / RMSE
y = 0.2766x-0.531
R² = 0.8711
0.00
0.20
0.40
0.60
0.80
1.00
1.20
1.40
0.00 1.00 2.00 3.00 4.00 5.00
RMSE
Alpha
Great Smoky Mtn. DEM Post / RMSE
y = 0.3369x0.5311
R² = 0.8711
0.00
0.20
0.40
0.60
0.80
1.00
1.20
1.40
0.00 1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00
RMSE
DEM Post
Grand Canyon Alpha / RMSE
y = 0.3886x-0.38
R² = 0.5059
0.00
0.20
0.40
0.60
0.80
1.00
1.20
1.40
1.60
0.00 1.00 2.00 3.00 4.00 5.00
RMSE
Alpha
Grand Canyon DEM Post / RMSE
y = 0.6015x0.3803
R² = 0.50590.00
0.20
0.40
0.60
0.80
1.00
1.20
1.40
1.60
0.00 1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00
RMSE
DEM Post
{
U.S. Department of the Interior
U.S. Geological Survey Frank Velasquez / Kristina Yamamoto
GIS in the Rockies
24 September 2015
Point Spacing and Pixel Size
Discussions

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2015 FOSS4G Track: Determining Optimal Post Spacing for Lidar DEM Creation Using Open Source and Commercial Software by Kristina Yamamoto and Frank Velasquez

  • 1. { U.S. Department of the Interior U.S. Geological Survey Frank Velasquez / Kristina Yamamoto GIS in the Rockies 24 September 2015 Point Spacing and Pixel Size
  • 2. Agenda  Objective  Literature  Alpha Table  Concept of Operations  Study Areas  Point Clouds  Process Flow  RMSE Results  Charts  Discussions
  • 3. Objective • Attempt to fill in the literature surrounding the optimal point space (DEMpost space) • For a given nominal point space (nps) distance (or point density) of a lidar point cloud, what is the optimal grid resolution without overly interpolating pixels or losing data quality • i.e. What is the scalar to apply to nps to achieve optimal DEMpost spacing • α = nps ÷ DEMpost • Empirical research problem • Experimental design is complete • Execution of the designed tests are (mostly) complete • Analysis of results is ongoing
  • 4. Literature • Rees and Arnold (2007) created a 2m raster grid from a 0.8 m nps • Hopkinson et al. (2009) had varying nps between 1 and 4m and created two DEMs; one at 5m and one at 25m • Perroy et al. (2010) created a raster grid at resolution equal to the nps • Gonzalez et al. (2010) suggest creating a grid of 2m or 5m from a 1m nominal point spacing • Jones et al. (2010) used a 2m resolution grid from a 1.6m nps • Dong et al. (2010) suggested a raster resolution of one-third to one-fifth the nps; i.e. of 3 to 5m, raster resolution would be 1m • Long et al. (2011) contradicts (or inverted) this suggesting that for spacing you would construct a 3m resolution grid. • Keith Clarke (UCSB) suggested a DEMpost of 2 times the min, max, mean, or median of the nearest neighbor interpoint spacing
  • 5. Alpha Table Technique No. Name Formula NPS Alpha DEM Post (cell size m2) 1 Nyquist-Shannon * p ≤ (h-bar [sub ij]/2) 2 Finn et al. (2012) 1.4 .90 1.6 3a Clarke min * DEM Post = 2 x spacing min 3b Clarke max * DEM Post = 2 x spacing max 3c Clarke mean * DEM Post = 2 x spacing mean 3d Clarke median * DEM Post = 2 x spacing median 4 Rees and Arnold (2007) 0.8 .40 2.0 5a Hopkinson et al. (2009) 1.0 .20 5.0 5b Hopkinson et al. (2009) 4.0 .16 25.0 5c Hopkinson et al (2009) 4.0 .80 5.0 6 Perroy et al. (2010) 1.5 1.0 1.5 7a Gonzalez et al. (2010) 1.0 .50 2.0 7b Gonzalez et al (2010) Same as 5a 1.0 .20 5.0 8 Jones et al (2010) Same as 5c 1.6 .80 2.0 9a Dong et al. (2010) 3.0 3.0 1.0 9b Dong et al (2010) 5.0 5.0 1.0 10 Long et al. (2011) 1.0 .33 3.0 11 Heideman 2.0 .67 3.0 * Postgres/PostGIS algorithm developed by Mike Gleason of NREL to calculate nearest neighbor All other alphas were derived from the literature (α = nps ÷ DEMpost)
  • 6. Concept of Operations Raw point cloud Filter ground points Reclassify ~5% of points for control group Generate DEM Ground points Generate shapefile of control points ShapefileDEM Compare DEM to shapefile, calculate Δz Reclassified point cloud Output csv & generate charts
  • 7. Great Smoky Mtn. Study Area
  • 9. Great Smoky Mtn. Point Clouds All Points Ground Points Control Points 5,614,743 879,891 46,210 (5.25%)
  • 10. Grand Canyon Point Clouds All Points Ground Points Control Points 37,975,517 12,003,692 558,699 (4.65%)
  • 11. Process Flow • LP360 to filter ground points from raw point cloud (Kim Mantey) • lasthin to filter/reclassify ~5% control points • ArcMap to create las dataset, calculate point statistics, verify reclassified point % • las2shp to generate shapefile of control points • Global Mapper to generate GeoTIFF DEM at various grid resolutions • ArcMap to verify DEM grid size • Global Mapper to compare DEM pixel z values to control group z values  Select all points in shapefile  Rename “elevation” attribute to “point elevation”  Add coordinates attributes to control points  Apply elevation attributes from terrain layer (DEM) to control points  Verify points now have two elevation attributes  Calculate elevation delta  Create a new attribute (“elevation delta”)  Subtract “elevation” from “point elevation”  Generate statistics report (included slope attributes for possible future analysis)  Calculate RMSE and generate charts
  • 12. Great Smoky Mtn. Technique No. Name Alpha DEM Post (Cell size m2) Columns and Rows RMSE 1 Nyquist-Shannon * .599 1.15 1305 x1305 0.35286 2 Finn et al. .90 .7667 1957 x 1957 0.19809 3a Clarke min * 3.383 .2039 7356 x 7356 0.17018 3b Clarke max * .077 8.9833 167 x 167 1.08971 3c Clarke mean * .288 2.3964 626 x 626 0.53171 3d Clarke median * .285 2.4252 619 x 619 0.54222 4 Rees and Arnold .40 1.725 870 x 870 0.47653 5a Hopkinson et al. .20 3.45 435 x 435 0.80557 5b Hopkinson et al. .16 4.3125 348 x 348 1.06316 5c Hopkinson et al. .80 .8625 1740 x 1740 0.18409 6 Perroy et al. 1.0 .69 2174 x 2174 0.18965 7a Gonzalez et al. .50 1.38 1087 x 1087 0.35112 9a Dong et al. 3.0 .23 6523 x 6523 0.17358 9b Dong et al. 5.0 .1380 10872 x 10872 0.17227 10 Long et al. .33 2.0909 718 x 718 0.59202 11 Heideman .67 1.0299 1457 x 1457 0.34911 Yamamoto .069 10.0 150 x 150 1.10687 1 meter cell .69 1.0 1500 x 1500 0.33047 • NPS .69 • Gonzalez 7b alpha same as Hopkinson 5a • Jones 8 alpha same as Hopkinson 5c * Gleason algorithm nearest neighbor results: Min: 0.1019 m Mean: 1.1982 m Max: 4.4916 m Median: 1.2126 m
  • 13. Grand Canyon Technique No. Name Alpha DEM Post (Cell size m2) Columns and Rows RMSE 2 Finn et al. .90 .3522 4259 x 4259 0.0890 4 Rees and Arnold .40 .7925 1893 x 1893 0.6000 5a Hopkinson .20 1.59 943 x 943 0.9363 5b Hopkinson .16 1.9813 757 x 757 0.9603 5c Hopkinson .80 .3963 3785 x 3785 0.4815 6 Perroy et al. 1.0 .317 4688 x 4688 0.3395 7a Gonzalez et al. .50 .63 2381 x 2381 0.4714 9a Dong et al. 3.0 .11 13638 x 13638 0.3430 9b Dong et al. 5.0 0.0634 23662 x 23662 0.3456 10 Long et al. .33 .9606 1562 x 1562 0.6401 11 Heideman .67 .4731 3171 x 3171 0.4699 Yamamoto .069 10.0 150 x 150 1.5501 1 meter cell .69 1.0 1500 x 1500 0.6350 • NPS .317 (Reported point density 9.97m2) • Nyquist-Shannon and Clarke inter-point spacing data unavailable at this time • Gonzalez 7b alpha same as Hopkinson 5a • Jones 8 alpha same as Hopkinson 5c
  • 14. Great Smoky Mtn. Alpha / RMSE y = 0.2766x-0.531 R² = 0.8711 0.00 0.20 0.40 0.60 0.80 1.00 1.20 1.40 0.00 1.00 2.00 3.00 4.00 5.00 RMSE Alpha
  • 15. Great Smoky Mtn. DEM Post / RMSE y = 0.3369x0.5311 R² = 0.8711 0.00 0.20 0.40 0.60 0.80 1.00 1.20 1.40 0.00 1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00 RMSE DEM Post
  • 16. Grand Canyon Alpha / RMSE y = 0.3886x-0.38 R² = 0.5059 0.00 0.20 0.40 0.60 0.80 1.00 1.20 1.40 1.60 0.00 1.00 2.00 3.00 4.00 5.00 RMSE Alpha
  • 17. Grand Canyon DEM Post / RMSE y = 0.6015x0.3803 R² = 0.50590.00 0.20 0.40 0.60 0.80 1.00 1.20 1.40 1.60 0.00 1.00 2.00 3.00 4.00 5.00 6.00 7.00 8.00 9.00 10.00 RMSE DEM Post
  • 18. { U.S. Department of the Interior U.S. Geological Survey Frank Velasquez / Kristina Yamamoto GIS in the Rockies 24 September 2015 Point Spacing and Pixel Size Discussions