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Rüdiger Trojok
UnternehmerTUM GmbH
Lichtenbergstr. 6
85748 Garching (Munich), Germany
+49-178-8835667
trojok@unternehmertum.de
Biological
Transformation
If I were a teenager today, I'd be hacking biology - Bill Gates
Bio.Kitchen is an open community lab for tech-talents
5 workstations: micro- and molecular biology, chemistry, synthetic bio and lab automation
Rüdiger
Trojok
Lab Lead
Leo
Sprengel
Lab Assistant
Andreas
Jefimowicz
Lab Assistant
Tools & Tech: rapid prototyping for agile life science
DNA Diagnostics Bentolab
Open Source Lab Hardware Open Source Pipetting
Robot
DNA Sequencer MinION
DNA Printer Kilobaser
Rapid Prototyping (digital)
Microfluidics
Cell Free Protein
Synthesis
Open Reagents
Collection
Beginner, advanced and startup courses offered
We focus on three core fields of life science innovation
Personalised
Medicine
Food Innovation
Circular
Economy
SARS-CoV 2
https://nextstrain.org/ncov/global?animate=2019-12-06,2020-09-22,0,1,30000&d=tree,map&p=grid
COVID-19 testing needs to happen rapidly to keep
infectious zones local and under control.
RNA extraction is done from the sample swabs in 45 mins.
Centrifuge
RT-QPCR is one globally accepted “Gold Standard” for testing on COVID-19. It is
expensive and time consuming. In addition handling in the lab is complex.
QPCR Thermocycler
RT-LAMP provides a cheaper and more reliable protocol compared to RT-
QPCR. Devices are cheaper, need less expertise. Time to result can be as low as
30min.
Heat block
reaction dependent dye for
visual readout
qPCR
LAMP
Sample
Sample preparation
(RNA extraction)
Sample preparation
(RNA extraction)
RNA amplification
RNA amplification
Analysis & report
RT-qPCR protocol
with results in 3,5
hours
Combination of qPCR and LAMP
15
0 0,5 1,0 1,5 2,0 2,5
Time
[hours]
3,0 3,5
Sample
Analysis & report
RUO LAMP quick test with
results in 2 hours without
thermocyclers
Test strategy:
Perform LAMP with all patient
samples.
Re-test LAMP-positive samples
with qPCR.
RT-LAMP = Reverse
Transcription Loop- Mediated
Isothermal Amplification.
Covid-19 RT-LAMP Diagnostic
Mobile Lab
17
Mobile Sars-COV-2
Diagnostic Lab
Mobile Lab
Core Technology
Training
Support
qPCR & LAMP technology
and workflow for
Diagnostic
Easy to transport and
ready to use in 24 h
education courses to
train users
Supply of Consumables,
Reagents & online help
desk
S2 Sample preparation room
S2 Patient
sampling
room
S1 Amplification
room
Patient
registration
& entrance
Patient
exit
S1 Reagent
preparation room
Patient
sample
Virus RNA
PCR & LAMP
samples
Patient sample RNA Extraction
RT-LAMP & RT-QPCR
Mastermix Preparation
RT-LAMP & RT-
QPCR
Amplification
Patient
sampling
Covid-19 Diagnostic process using open source
technology and reagents with the Bio.Kitchen Mobile Lab
Our Bio.Kitchen Mobile Corona Diagnostic Lab is a
ruggedized lab-in-a-box for pandemic response
▪ 4 mobile lab stations for installation in separated rooms for process
▪ Easily transported and operation - ready to use within ~24h, anywhere in EU
▪ Compatible to our molecular and microbiological lab tools
▪ Optimized equipment storage compatible with Eurocontainers
▪ Extendable table top area to a maximum of 7.2 m² (5 work spaces)
▪ On demand: mobile energy generator and voltage regulators
UnternehmerTUM GmbH / 21.11.19
With 6 mobile lab stations Ghana could increase testing
rates equivalent to Germany’s
Assumptions:
● Staffing: 3 clinical laboratory technician working in 3 shifts 24/7
● 24 samples handled per hour, 20h diagnostic service, 4h maintenance
● a positive rate of less than 10%
● QPCR: hands on time 45 mins + 120 mins incubation time to result
● LAMP: hands on time 45 mins + 30 mins incubation time to result
capacity:
more than 500 diagnoses per station per 24h
Allowing Airport Passenger Testing
Enabling Mobile Testing Stations
Supporting Pop-up hospitals
● 2x Pipette sets
● Waste system
(autoclave)
● storage system
● Hand-hygiene
system
● Heat block
● qPCR
● digital
documentation
system
● Table
centrifuge
● vortex
Protocols &
Equipment
Mobile Lab
OxGEn certified
● hygiene kit
● sampling kit
● RNA extraction
kit
reagent supply
5 days life education
for Covid-19 sampling,
RNA Extraction, QPCR
and LAMP methods
course capacity up to
10 local students
Trainings
Installing and operating a Mobile Corona Diagnostic Lab
with instrumentation, reagent supply and trainings
● Waste system
● Hand-hygiene
system
● PPE-personel
protective
equipment
● glovebox
● Storage
● 2x Fridge,
Freezer
● sink
Hive Biolab
● LAMP enzyme
production
Incas Diagnostics
● LAMP kits
manufacturing
Teaching of Teachers
for Covid-19
Diagnostics
LAMP kit Production
Methodology
Trainings reagent supply
GMO Production and purification of LAMP enzymes
Heterologous Production
• E. Coli Tuner Cells
• Shaker Incubator
Expressed Enzymes
• isothermal Polymerase
• Reverse Transcriptase
Purification
• His-Tag Affinity Chromatography
• Ion-Exchange Chromatography
Quality Control
• SDS Page
• UV-Vis Spectroscopy
Vielen Dank!
UnternehmerTUM GmbH
Lichtenbergstrasse 6
85748 Garching (Munich), Germany
Tel.+49 (89) 18 94 69-0
www.unternehmertum.de
UnternehmerTUM GmbH
Lichtenbergstr. 6
85748 Garching (Munich), Germany
+49-178-8835667
trojok@unternehmertum.de
Rüdiger Trojok
Lab Lead

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Testing Concept.pdf

  • 1. Rüdiger Trojok UnternehmerTUM GmbH Lichtenbergstr. 6 85748 Garching (Munich), Germany +49-178-8835667 trojok@unternehmertum.de
  • 2. Biological Transformation If I were a teenager today, I'd be hacking biology - Bill Gates
  • 3. Bio.Kitchen is an open community lab for tech-talents 5 workstations: micro- and molecular biology, chemistry, synthetic bio and lab automation Rüdiger Trojok Lab Lead Leo Sprengel Lab Assistant Andreas Jefimowicz Lab Assistant
  • 4.
  • 5. Tools & Tech: rapid prototyping for agile life science DNA Diagnostics Bentolab Open Source Lab Hardware Open Source Pipetting Robot DNA Sequencer MinION DNA Printer Kilobaser Rapid Prototyping (digital) Microfluidics Cell Free Protein Synthesis Open Reagents Collection
  • 6. Beginner, advanced and startup courses offered
  • 7. We focus on three core fields of life science innovation Personalised Medicine Food Innovation Circular Economy
  • 10. COVID-19 testing needs to happen rapidly to keep infectious zones local and under control.
  • 11.
  • 12. RNA extraction is done from the sample swabs in 45 mins. Centrifuge
  • 13. RT-QPCR is one globally accepted “Gold Standard” for testing on COVID-19. It is expensive and time consuming. In addition handling in the lab is complex. QPCR Thermocycler
  • 14. RT-LAMP provides a cheaper and more reliable protocol compared to RT- QPCR. Devices are cheaper, need less expertise. Time to result can be as low as 30min. Heat block reaction dependent dye for visual readout
  • 15. qPCR LAMP Sample Sample preparation (RNA extraction) Sample preparation (RNA extraction) RNA amplification RNA amplification Analysis & report RT-qPCR protocol with results in 3,5 hours Combination of qPCR and LAMP 15 0 0,5 1,0 1,5 2,0 2,5 Time [hours] 3,0 3,5 Sample Analysis & report RUO LAMP quick test with results in 2 hours without thermocyclers Test strategy: Perform LAMP with all patient samples. Re-test LAMP-positive samples with qPCR. RT-LAMP = Reverse Transcription Loop- Mediated Isothermal Amplification.
  • 17. 17 Mobile Sars-COV-2 Diagnostic Lab Mobile Lab Core Technology Training Support qPCR & LAMP technology and workflow for Diagnostic Easy to transport and ready to use in 24 h education courses to train users Supply of Consumables, Reagents & online help desk
  • 18.
  • 19. S2 Sample preparation room S2 Patient sampling room S1 Amplification room Patient registration & entrance Patient exit S1 Reagent preparation room Patient sample Virus RNA PCR & LAMP samples Patient sample RNA Extraction RT-LAMP & RT-QPCR Mastermix Preparation RT-LAMP & RT- QPCR Amplification Patient sampling Covid-19 Diagnostic process using open source technology and reagents with the Bio.Kitchen Mobile Lab
  • 20. Our Bio.Kitchen Mobile Corona Diagnostic Lab is a ruggedized lab-in-a-box for pandemic response ▪ 4 mobile lab stations for installation in separated rooms for process ▪ Easily transported and operation - ready to use within ~24h, anywhere in EU ▪ Compatible to our molecular and microbiological lab tools ▪ Optimized equipment storage compatible with Eurocontainers ▪ Extendable table top area to a maximum of 7.2 m² (5 work spaces) ▪ On demand: mobile energy generator and voltage regulators
  • 21. UnternehmerTUM GmbH / 21.11.19 With 6 mobile lab stations Ghana could increase testing rates equivalent to Germany’s Assumptions: ● Staffing: 3 clinical laboratory technician working in 3 shifts 24/7 ● 24 samples handled per hour, 20h diagnostic service, 4h maintenance ● a positive rate of less than 10% ● QPCR: hands on time 45 mins + 120 mins incubation time to result ● LAMP: hands on time 45 mins + 30 mins incubation time to result capacity: more than 500 diagnoses per station per 24h
  • 25. ● 2x Pipette sets ● Waste system (autoclave) ● storage system ● Hand-hygiene system ● Heat block ● qPCR ● digital documentation system ● Table centrifuge ● vortex Protocols & Equipment Mobile Lab OxGEn certified ● hygiene kit ● sampling kit ● RNA extraction kit reagent supply 5 days life education for Covid-19 sampling, RNA Extraction, QPCR and LAMP methods course capacity up to 10 local students Trainings Installing and operating a Mobile Corona Diagnostic Lab with instrumentation, reagent supply and trainings ● Waste system ● Hand-hygiene system ● PPE-personel protective equipment ● glovebox ● Storage ● 2x Fridge, Freezer ● sink Hive Biolab ● LAMP enzyme production Incas Diagnostics ● LAMP kits manufacturing Teaching of Teachers for Covid-19 Diagnostics LAMP kit Production Methodology Trainings reagent supply
  • 26. GMO Production and purification of LAMP enzymes Heterologous Production • E. Coli Tuner Cells • Shaker Incubator Expressed Enzymes • isothermal Polymerase • Reverse Transcriptase Purification • His-Tag Affinity Chromatography • Ion-Exchange Chromatography Quality Control • SDS Page • UV-Vis Spectroscopy
  • 27. Vielen Dank! UnternehmerTUM GmbH Lichtenbergstrasse 6 85748 Garching (Munich), Germany Tel.+49 (89) 18 94 69-0 www.unternehmertum.de UnternehmerTUM GmbH Lichtenbergstr. 6 85748 Garching (Munich), Germany +49-178-8835667 trojok@unternehmertum.de Rüdiger Trojok Lab Lead