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Title: Screening and molecular typing of antimicrobial-
resistant Shiga toxin-producing Escherichia coli strains
(STEC) from cattle feces in Kushtia, Bangladesh.
WALID HASSAN
Examination Roll: 171711
Registration No: 1270
Session: 2017-2018
Department of Biotechnology & Genetic Engineering
Islamic University, Kushtia-7003, Bangladesh
Supervisor
DR. MD. MAFIZUR RAHMAN
Associate professor
Department of Biotechnology & Genetic Engineering
Islamic University, Kushtia-7003, Bangladesh
OUTLINE
Background
Objectives
Materials and method
Results and discussion
Background
Antimicrobial resistance( AMR) is a global health threat And animal is one of the
contributing source.
Shiga toxin-producing Escherichia coli (STEC) has emerged as significant foodborne
pathogens.
Shiga toxin–producing Escherichia coli (STEC) O157:H7 is a well-recognized cause of
bloody diarrhea and hemolytic-uremic syndrome (HUS).
The ability of STEC strains to cause human disease is due to the production of Shiga
toxins.
Cattle are the major reservoir of STEC, and humans acquire STEC infections through
ingestion of cross-contaminated food of cattle origin.
Non-O157 STEC sero-groups O26, O45, O103, O111, O121, O145 are frequently
associated with severe illness and outbreaks in humans.
These six serotypes account for about 75% of all STEC infections in human.
E.Coli O157 ingested
HUSResolution
Non bloody diarrhea, abdominal cramps
Bloody diarrhea
3-4 days
1-2 days80%
92% 8%
5-6 days
Sequence of events in E.coli O157:H infection
Non STEC E.Coli O157 ingested
HUSResolution
Non bloody diarrhea, abdominal cramps
Bloody diarrhea
3-4 days
1-2 days40%
98% rare
5-6 days
Sequence of events in Non O157 STEC infection
Cycle of event in spread of STEC (STEC Cattle and contaminated cycle)
 Infection begins once Stx bind to the cell-surface receptor on the endothelial
cells.
 Thereafter, the catalytic A-subunit is translocate into the cell cytosol,
resulting in the inhibition of protein synthesis after inactivation of 60S
ribosomal subunit of the eukaryotic cell.
 STEC infections require a low infectious dose (<50 bacterial cells), and the
incubation period, prior to the onset of diarrhea, ranges between 2 and 12
days
Mechanism action of Shiga toxin
Mechanism action of Shiga toxin
Objectives
Objectives of the study
To determinate
the prevalence
of food born
pathogen which
is contaminated
by cattle feces
Phylogenetic
analysis of
selected gene
(stx-1 and stx-2
gene)
Characterize and
identify the
bacterial isolates
by
morphologically
on selective
media and stx
gene sequencing
To study the
prevalence and
distribution of
stx(1) and stx(2)
gene in E. coli
O157:H7 and
non-O157:H7
strains isolated
from cattle in
khustia
Bangladesh.
Antibiogram
profile of
identified
bacterial
isolates
Materials &
Methods
Sample collection
(Cow feces)
Isolation
of bacteria
Identification of bacteria
Morphological
identification
Molecular
identification
Selective media based
identification i.e. EMB
and SMAC
General media based
identification: i.e. NA
Biochemical
identification
PCR
Gene sequencing
Antibiotic sensitivity
assay
Flowchart
Serological
identification
Sample collection
 Source of samples: Sheikh para bazer, Anandonagor, Horipur agriculture farm
in Kushtia, Bangladesh
 Number of samples: Total 30~50 samples of cattle feces
 Collected Sample: 08
 Research: Laboratory of Microbiology, Department of Biotechnology and
Genetic Engineering, Islamic University, Kushtia, Bangladesh
Isolation process of bacteria:
 Approximately 1~10 g of each fecal sample was mixed in 9~90 ml of Trypticase
soya broth (TSB) with 20 mg/L novobiocine and incubated for 16–18 h at 37 °C.
 This was streaked out onto sorbitol MacConkey agar (SMAC) supplemented
with 1 mg/L potassium tellurite and incubated for 18–24 h at 37 °C.
 The morphologically distinguished colonies were observed, counted and
recorded.
 The remaining colonies on the selective and differential media were also
observed by streaking in selective and differential media i.e. Eosin methylene
blue (EMB) and Rainbow Agar media.
~
Morphological identification:
Bacterial morphology deals with
• Size,
• Shape, and
• Arrangement of bacterial cells.
Molecular identification:
 Selected bacterial isolates were identified using specific gene (stx-1 and stx-2)
sequencing.
Result and
Discussion
1. Sample collection: Total 30~50 samples of cattle feces. Collected sample 08
2. Isolation of bacteria: On going
3. Identification of bacteria: Not yet down
Result and Discussion
Isolation:
• Isolation of E. coli bacteria from cattle feces
EMB Agar SS Agar
• Isolation of bacteria from Cattle feces
Nutrient agar
Conclusions
STEC O157 and non-O157 represents a serious threat to public health worldwide.
The potential for large-scale outbreaks and widespread prevalence in animal sources
have necessitated the development and evaluation of rapid, sensitive, and specific
methods for detection and surveillance for this pathogen.
This study help to identify the antibiotic resistance strains of STEC which could be
serious health problem to human .
Thesis presentation new

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Thesis presentation new

  • 1. Title: Screening and molecular typing of antimicrobial- resistant Shiga toxin-producing Escherichia coli strains (STEC) from cattle feces in Kushtia, Bangladesh. WALID HASSAN Examination Roll: 171711 Registration No: 1270 Session: 2017-2018 Department of Biotechnology & Genetic Engineering Islamic University, Kushtia-7003, Bangladesh Supervisor DR. MD. MAFIZUR RAHMAN Associate professor Department of Biotechnology & Genetic Engineering Islamic University, Kushtia-7003, Bangladesh
  • 4. Antimicrobial resistance( AMR) is a global health threat And animal is one of the contributing source. Shiga toxin-producing Escherichia coli (STEC) has emerged as significant foodborne pathogens. Shiga toxin–producing Escherichia coli (STEC) O157:H7 is a well-recognized cause of bloody diarrhea and hemolytic-uremic syndrome (HUS). The ability of STEC strains to cause human disease is due to the production of Shiga toxins.
  • 5. Cattle are the major reservoir of STEC, and humans acquire STEC infections through ingestion of cross-contaminated food of cattle origin. Non-O157 STEC sero-groups O26, O45, O103, O111, O121, O145 are frequently associated with severe illness and outbreaks in humans. These six serotypes account for about 75% of all STEC infections in human.
  • 6. E.Coli O157 ingested HUSResolution Non bloody diarrhea, abdominal cramps Bloody diarrhea 3-4 days 1-2 days80% 92% 8% 5-6 days Sequence of events in E.coli O157:H infection
  • 7. Non STEC E.Coli O157 ingested HUSResolution Non bloody diarrhea, abdominal cramps Bloody diarrhea 3-4 days 1-2 days40% 98% rare 5-6 days Sequence of events in Non O157 STEC infection
  • 8. Cycle of event in spread of STEC (STEC Cattle and contaminated cycle)
  • 9.  Infection begins once Stx bind to the cell-surface receptor on the endothelial cells.  Thereafter, the catalytic A-subunit is translocate into the cell cytosol, resulting in the inhibition of protein synthesis after inactivation of 60S ribosomal subunit of the eukaryotic cell.  STEC infections require a low infectious dose (<50 bacterial cells), and the incubation period, prior to the onset of diarrhea, ranges between 2 and 12 days Mechanism action of Shiga toxin
  • 10. Mechanism action of Shiga toxin
  • 12. Objectives of the study To determinate the prevalence of food born pathogen which is contaminated by cattle feces Phylogenetic analysis of selected gene (stx-1 and stx-2 gene) Characterize and identify the bacterial isolates by morphologically on selective media and stx gene sequencing To study the prevalence and distribution of stx(1) and stx(2) gene in E. coli O157:H7 and non-O157:H7 strains isolated from cattle in khustia Bangladesh. Antibiogram profile of identified bacterial isolates
  • 14. Sample collection (Cow feces) Isolation of bacteria Identification of bacteria Morphological identification Molecular identification Selective media based identification i.e. EMB and SMAC General media based identification: i.e. NA Biochemical identification PCR Gene sequencing Antibiotic sensitivity assay Flowchart Serological identification
  • 15. Sample collection  Source of samples: Sheikh para bazer, Anandonagor, Horipur agriculture farm in Kushtia, Bangladesh  Number of samples: Total 30~50 samples of cattle feces  Collected Sample: 08  Research: Laboratory of Microbiology, Department of Biotechnology and Genetic Engineering, Islamic University, Kushtia, Bangladesh
  • 16. Isolation process of bacteria:  Approximately 1~10 g of each fecal sample was mixed in 9~90 ml of Trypticase soya broth (TSB) with 20 mg/L novobiocine and incubated for 16–18 h at 37 °C.  This was streaked out onto sorbitol MacConkey agar (SMAC) supplemented with 1 mg/L potassium tellurite and incubated for 18–24 h at 37 °C.  The morphologically distinguished colonies were observed, counted and recorded.  The remaining colonies on the selective and differential media were also observed by streaking in selective and differential media i.e. Eosin methylene blue (EMB) and Rainbow Agar media. ~
  • 17. Morphological identification: Bacterial morphology deals with • Size, • Shape, and • Arrangement of bacterial cells. Molecular identification:  Selected bacterial isolates were identified using specific gene (stx-1 and stx-2) sequencing.
  • 19. 1. Sample collection: Total 30~50 samples of cattle feces. Collected sample 08 2. Isolation of bacteria: On going 3. Identification of bacteria: Not yet down Result and Discussion
  • 20. Isolation: • Isolation of E. coli bacteria from cattle feces EMB Agar SS Agar
  • 21. • Isolation of bacteria from Cattle feces Nutrient agar
  • 23. STEC O157 and non-O157 represents a serious threat to public health worldwide. The potential for large-scale outbreaks and widespread prevalence in animal sources have necessitated the development and evaluation of rapid, sensitive, and specific methods for detection and surveillance for this pathogen. This study help to identify the antibiotic resistance strains of STEC which could be serious health problem to human .