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Molecular epidemiology and
characterization of virulence genes of
commnunity-acquired and hospital-acquired
methicillin-resistant Staphylococcus aureus
in Colombia
Bibiana Chavarro Portillo, Jaime Enrique Moreno, Nancy Yomayusa, Carlos
Arturo Álvarez, Betsy Esperanza Castro Cardozo, Javier Antonio Escobar
Pérez, Paula Lucía Díaz, Milciades Ibañez, Sebastián Mendez-Alvarez, Aura Lucía
Leal, Natasha Vanegas Gómez
Manuela Rendón Díez
Daniel Peña Tobón
*INTRODUCTION
Methicillin-resistant Staphylococcus aureus
Kind Virulence Factors
Staphylococcus
Strucutaral
components
Enzymes
Toxins
Genus Methicillin
Aureus Beta Lactam
antiobiotic
INTRODUCTION
INTRODUCTION
Staphylococcus From the Greck sthapylé meaning bunch of grapes
Gram Positive Bacteria
Facultative bacteria growth: growing in aerobic
and anaerobic enviroments
Microorganims in the skin and mucous of
humans and animals
Cell wall: pollysaccharide capsule to protect from
phagocytosis
Secreat liquid with monosaccharides, proteins and
peptides: to increase their bond sterenght
Aureus Facultative anaerobic bacteria
Gram Positive Bacteria
Produce diseases like
Main cause of nosocomial infections: passing
easily into the bloodstream
Pollysaccharide cell envelope: increase adhesion
capacity, prevents recognition, reinforces it´s
antiphagocytic effect
INTRODUCTION
Benign skin infections:
folliculitis
Benign mucosal
infections: conjunctivitis
Life threatening
diseases:
ostomyelitis, meningitis
, sepsis, pneumonia
INTRODUCTION
Methicillin
Beta-lactam
antiobiotic
Was used to
treat
infections
Caused by
gram positive
bacteria
That produce
beta-
lactamase
INTRODUCTION
Methicillin
MODE
OF
ACTION
Inhibiting the
synthesis of bacterial
cell walls
Inhibition
competitive of
transpeptidase
enzyme
Prevents
formation of
bonds between
the
peptidoglycan
chains
INTRODUCTION
Virulence factors
Structural components
Virulence factors Action
Capsule Inhibits chemotaxis and phagocytosis
Extracelular
pollysaccharides
Facilites adhesion
Peptidoglycan Stimulates cell lysis and production of endogenous pyrogens
Teichoic acid Staphylococcus adhesion to fibronectin
MSCRAMM Increase tissue adhesion
Protein A Inmune response decreases
INTRODUCTION
Virulence factors
Enzymes
Virulence factors Action
Coagulase Transformation of fibrinogen to fibrin (inmune response
decreases)
Hyaluronidase Destruction of hialuronic acid to the spread of s.aureus
Fibrinolysin Dissolves fibrin clots
Lipases Lipid hydrolisis: acumulation of s.aureus
Endonucleases/DNAsa DNA hydrolysis
Beta lactamases
INTRODUCTION
Virulence factors
Toxins
Virulence factors Action
Cytotoxins Destroys cells
Exfoliative toxins Cutaneous damages
Enterotoxins Gastrointestinal problems by openin channels
TSST-1 Toxic shock: lymphocyte activation for citokine production
Methicillin-resistant Staphylococcus aureus (MRSA)
Infection that doesnt improve with the first line of antibiotics
Acquired in the hospital or in the community
HA
Chilean clone
Brazilian clone
CA USA 300
Virulence factors: severity of infections
Proteolytic activity,
toxic and litic effects
Frequent in patients with weakened
inmune systems
INTRODUCTION
Methicillin-resistant Staphylococcus aureus (MRSA)
INTRODUCTION
Symptoms and sings
Skin: red,
swollen
and sore
Secretion
of pus
Wounds
that dont
heal
Chest
pain
Cough
Shortness
of breath
Fatigue
*OBJECTIVE
OBJECTIVE
To determine the molecular epidemilogy and presence of
virulence genes in community-acquired (CA) and hospital-
acquired (HA) methicillin-resistant Staphylococus aureus
(MRSA) insolates and their relationship to clinical outcomes.
*Materiales y métodos
MATERIALES Y MÉTODOS
Población de estudio
Junio 2006-Diciembre 2007
Mayores de 18 años
Hospitales de 3° nivel
Muestras clínicas
Enviadas a la laboratorio
de referencia
Datos clínicos
Infección
Resultado
Recaída
Mejora
Muerte
30 días
Sangre
Secreciones
Tejidos blandos
Heridas
Aislados
bacterianos
y cepas de
referencia
Mu50
TC146
USA 300-
0114
JCSC4744
JCSC2172
81/108
JCSC4469
NPS123
USA500
FRI1151
MATERIALES Y MÉTODOS
MATERIALES Y MÉTODOS
PRC: Reacción en cadena de polimerasa
*Kary Mullis --- > 80´s
*Amplificación directa de un gen o un
fragmento de DNA
*Incremento en el número de copias
de un DNA en corto tiempo
MATERIALES Y MÉTODOS
PRC
DESNATURALIACIÓN
HIBRIDACIÓN
REPLICACIÓN
MATERIALES Y MÉTODOS
PRC: ¿Qué necesito?
*DNA plantilla
*Primer
*DNA polimerasa
*Buffer
PRC: ¿Para qué?
*Clonación
*Establecer polimorfirmos
*Dx enfermedades genéticas
*Medicina Forense
*Detección de
microorganismos infecciosos
PRC y el staphylococcus aureus resistente a la meticilina???
MATERIALES Y MÉTODOS
Confirmar especie y resistencia a
meticilina.
*Enterotoxina
*Exfoliativa
*Hemolisina
*Shock Tóxico
*Protíenas adhesivas
Presencia de
PFGE: Electroforesis en gel de campo pulsátil
MATERIALES Y MÉTODOS
*Schwartz y Cantor: 1984
MATERIALES Y MÉTODOS
PFGE: Electroforesis en gel de campo pulsátil
ELECTROFORESIS
Utilización de corriente eléctrica
controlada
Separación de biomoléculas según:
Carga Tamaño
MATERIALES Y MÉTODOS
PFGE: Electroforesis en gel de campo pulsátil
*Reducción del movimiento de las
moléculas utilizando un medio que
oponga resistencia =GEL
Los fragmentos son sometidos a
cargas eléctricas en diferentes
direcciones.
MATERIALES Y MÉTODOS
PFGE: Electroforesis en gel de campo pulsátil
*Separación de grandes
fragmentos de DNA
Induce reordenamiento
por cambios eléctricos
periódicos constantes
Duración en el campo
eléctrico determina el tamaño
del fragmento.
MATERIALES Y MÉTODOS
Susceptibilidad antimicrobiana Métodos para determinar la
susceptibilidad de los organismos a
agentes antimicrobianos.
*Oxacilina
*Gentamicina
*Rifampicina
*Eritromicina
*Ciprofloxacina
*Vancomicina
*Linezoild
*Tetraciclina
*Clindamicina
*Trimetropim
*Sulfametoxazol
MATERIALES Y MÉTODOS
Susceptibilidad antimicrobiana
Recomendaciones para
establecer la terapia mas
adecuada para un paciente
MATERIALES Y MÉTODOS
Análisis estadístico
Basándose en:
Mejoría
Mortalidad
*RESULTADOS
RESULTADOS
Se obtuvieron diferentes patrones de los 270
aislados
• F, U, D, G, H, K,O y P
Por PFGE buscando relación
genética con
• Clon Chileno, Clon USA300-0114,
Clon pediátrico
RESULTADOS
• 162 (60 %)
• Clon Chileno -
relación genética
(>78,8%)
PATRÓN F
• 86(31,8%)
• USA300-0114 –
relación genética
(>79%)
PATRÓN U
• 4(1,5%)
• Clon pediátrico–
relación genética
(79%)
PATRÓN D
RESULTADOS
• ST1110 - 2 aislamientos
Clon Chileno – gen arcC
• ST1111 – 1 aislamiento
Clon Pediátrico – gen arcC
ANÁLISIS POR MLST
RESULTADOS
RESULTADOS
TIPIFICACION POR SCCmec
Patrón U
82 – Tipo IVc / 3 – Tipo IVa / 1 – Tipo
IVb
Patrones F y D
Tipo I y IV
Patrón G
9 – Tipo II
1- Tipo I
RESULTADOS
Factores de Virulencia
• Genes sem, sen y seo (184), seg (173), sei (154) ------- Grupo de genes de la
enterotoxina ( EGC )
• Toxina exfoliativa A (52 CA-MRSA y 171 HA-MSRA)
• Toxina exfoliativa B (4)
• Genes sej and seg (2 HA-MRSA)
• Genes sek, seq y lukF-PV/luckS-PS (CA –MRSA)
• Proteínas de unión a fibronectina A y B (CA-MRSA)
RESULTADOS
RESULTADOS
RESULTADOS
MORTALIDAD • Relación entre la mortalidad y la
infección por HA – MRSA en
comparación con CA-MRSA ( 21 vs
10,6 %)
• Aumento en mortalidad en pacientes
con bacteriemia (45,9%), neumonía (
43,8%), en comparación con infección
en el sitio quirúrgico (10,8%)
• Existen relación directos entre
factores de virulencia y patologías
desarrolladas
*DISCUSSION
DISCUSSION
INVESTIGATORS IDEA AGREE OR DISAGREE
Ferry T, Thomas D,
Genestier AL, Bes M, et al.
Described a greater
prevalence of the egc –
positive isolates recovered
from surfaces infections
compared to invasive
infections.
Ferry T, Thomas D,
Genestier AL, Bes M, et al
Observed a negative
relationship between the
egc cluster and clinical
severity
DISCUSSION
INVESTIGATORS IDEA AGREE OR DISAGREE
Van Belkun A, Melles DC,
Snijders SV et al
They did not find any
evidence of an association
of the egc cluster with
mortlity in patients with
MRSA- related bacteremia.
Bae IG, Tonthat GT,
Stryjewsky ME et al
They found a paradoxically
higther rate of clinical
healing through the
presence of some adhesive
genes
*CONCLUSIONS
CONCLUSIONS
*Staphylococcus aureus is a microorganism
that causes problems in hospitals, because
when people go to the hospital for many
surgeries can be infected with the organism
*The high quantity of isolates of MRSA are a major problem for a
treatment, this microorganism is difficult to eradicate because when we
want kill the pathogen agent, we found that each clones of MRSA has a
important number of isolates with genomic differences between its.
CONCLUSIONS
*The types of MRSA ( USA300-0114, pediatric y
Chilean ) has many genes that generate the
different between its, that to permite separate
the isolates in families. The genetic variability
is essential as a survival mechanism of the
organism.
*This article is very important because the investigators developed a
study for explain the molecular and genetic causes in Staphylococcus
aureus infection, based in identify the genetic variability, then when
they identified the genes that generate differences between clones, the
investigators found the relationship between genes and diseases
Manuela Rendón Díez
Seminario Biologia Molecular

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Seminario Biologia Molecular

  • 1. Molecular epidemiology and characterization of virulence genes of commnunity-acquired and hospital-acquired methicillin-resistant Staphylococcus aureus in Colombia Bibiana Chavarro Portillo, Jaime Enrique Moreno, Nancy Yomayusa, Carlos Arturo Álvarez, Betsy Esperanza Castro Cardozo, Javier Antonio Escobar Pérez, Paula Lucía Díaz, Milciades Ibañez, Sebastián Mendez-Alvarez, Aura Lucía Leal, Natasha Vanegas Gómez Manuela Rendón Díez Daniel Peña Tobón
  • 3. Methicillin-resistant Staphylococcus aureus Kind Virulence Factors Staphylococcus Strucutaral components Enzymes Toxins Genus Methicillin Aureus Beta Lactam antiobiotic INTRODUCTION
  • 4. INTRODUCTION Staphylococcus From the Greck sthapylé meaning bunch of grapes Gram Positive Bacteria Facultative bacteria growth: growing in aerobic and anaerobic enviroments Microorganims in the skin and mucous of humans and animals Cell wall: pollysaccharide capsule to protect from phagocytosis Secreat liquid with monosaccharides, proteins and peptides: to increase their bond sterenght
  • 5. Aureus Facultative anaerobic bacteria Gram Positive Bacteria Produce diseases like Main cause of nosocomial infections: passing easily into the bloodstream Pollysaccharide cell envelope: increase adhesion capacity, prevents recognition, reinforces it´s antiphagocytic effect INTRODUCTION Benign skin infections: folliculitis Benign mucosal infections: conjunctivitis Life threatening diseases: ostomyelitis, meningitis , sepsis, pneumonia
  • 6. INTRODUCTION Methicillin Beta-lactam antiobiotic Was used to treat infections Caused by gram positive bacteria That produce beta- lactamase
  • 7. INTRODUCTION Methicillin MODE OF ACTION Inhibiting the synthesis of bacterial cell walls Inhibition competitive of transpeptidase enzyme Prevents formation of bonds between the peptidoglycan chains
  • 8. INTRODUCTION Virulence factors Structural components Virulence factors Action Capsule Inhibits chemotaxis and phagocytosis Extracelular pollysaccharides Facilites adhesion Peptidoglycan Stimulates cell lysis and production of endogenous pyrogens Teichoic acid Staphylococcus adhesion to fibronectin MSCRAMM Increase tissue adhesion Protein A Inmune response decreases
  • 9. INTRODUCTION Virulence factors Enzymes Virulence factors Action Coagulase Transformation of fibrinogen to fibrin (inmune response decreases) Hyaluronidase Destruction of hialuronic acid to the spread of s.aureus Fibrinolysin Dissolves fibrin clots Lipases Lipid hydrolisis: acumulation of s.aureus Endonucleases/DNAsa DNA hydrolysis Beta lactamases
  • 10. INTRODUCTION Virulence factors Toxins Virulence factors Action Cytotoxins Destroys cells Exfoliative toxins Cutaneous damages Enterotoxins Gastrointestinal problems by openin channels TSST-1 Toxic shock: lymphocyte activation for citokine production
  • 11. Methicillin-resistant Staphylococcus aureus (MRSA) Infection that doesnt improve with the first line of antibiotics Acquired in the hospital or in the community HA Chilean clone Brazilian clone CA USA 300 Virulence factors: severity of infections Proteolytic activity, toxic and litic effects Frequent in patients with weakened inmune systems INTRODUCTION
  • 12. Methicillin-resistant Staphylococcus aureus (MRSA) INTRODUCTION Symptoms and sings Skin: red, swollen and sore Secretion of pus Wounds that dont heal Chest pain Cough Shortness of breath Fatigue
  • 14. OBJECTIVE To determine the molecular epidemilogy and presence of virulence genes in community-acquired (CA) and hospital- acquired (HA) methicillin-resistant Staphylococus aureus (MRSA) insolates and their relationship to clinical outcomes.
  • 16. MATERIALES Y MÉTODOS Población de estudio Junio 2006-Diciembre 2007 Mayores de 18 años Hospitales de 3° nivel Muestras clínicas Enviadas a la laboratorio de referencia Datos clínicos Infección Resultado Recaída Mejora Muerte 30 días Sangre Secreciones Tejidos blandos Heridas
  • 17. Aislados bacterianos y cepas de referencia Mu50 TC146 USA 300- 0114 JCSC4744 JCSC2172 81/108 JCSC4469 NPS123 USA500 FRI1151 MATERIALES Y MÉTODOS
  • 18. MATERIALES Y MÉTODOS PRC: Reacción en cadena de polimerasa *Kary Mullis --- > 80´s *Amplificación directa de un gen o un fragmento de DNA *Incremento en el número de copias de un DNA en corto tiempo
  • 20. MATERIALES Y MÉTODOS PRC: ¿Qué necesito? *DNA plantilla *Primer *DNA polimerasa *Buffer PRC: ¿Para qué? *Clonación *Establecer polimorfirmos *Dx enfermedades genéticas *Medicina Forense *Detección de microorganismos infecciosos
  • 21. PRC y el staphylococcus aureus resistente a la meticilina??? MATERIALES Y MÉTODOS Confirmar especie y resistencia a meticilina. *Enterotoxina *Exfoliativa *Hemolisina *Shock Tóxico *Protíenas adhesivas Presencia de
  • 22. PFGE: Electroforesis en gel de campo pulsátil MATERIALES Y MÉTODOS *Schwartz y Cantor: 1984
  • 23. MATERIALES Y MÉTODOS PFGE: Electroforesis en gel de campo pulsátil ELECTROFORESIS Utilización de corriente eléctrica controlada Separación de biomoléculas según: Carga Tamaño
  • 24. MATERIALES Y MÉTODOS PFGE: Electroforesis en gel de campo pulsátil *Reducción del movimiento de las moléculas utilizando un medio que oponga resistencia =GEL Los fragmentos son sometidos a cargas eléctricas en diferentes direcciones.
  • 25. MATERIALES Y MÉTODOS PFGE: Electroforesis en gel de campo pulsátil *Separación de grandes fragmentos de DNA Induce reordenamiento por cambios eléctricos periódicos constantes Duración en el campo eléctrico determina el tamaño del fragmento.
  • 26. MATERIALES Y MÉTODOS Susceptibilidad antimicrobiana Métodos para determinar la susceptibilidad de los organismos a agentes antimicrobianos. *Oxacilina *Gentamicina *Rifampicina *Eritromicina *Ciprofloxacina *Vancomicina *Linezoild *Tetraciclina *Clindamicina *Trimetropim *Sulfametoxazol
  • 27. MATERIALES Y MÉTODOS Susceptibilidad antimicrobiana Recomendaciones para establecer la terapia mas adecuada para un paciente
  • 28. MATERIALES Y MÉTODOS Análisis estadístico Basándose en: Mejoría Mortalidad
  • 30. Se obtuvieron diferentes patrones de los 270 aislados • F, U, D, G, H, K,O y P Por PFGE buscando relación genética con • Clon Chileno, Clon USA300-0114, Clon pediátrico RESULTADOS
  • 31. • 162 (60 %) • Clon Chileno - relación genética (>78,8%) PATRÓN F • 86(31,8%) • USA300-0114 – relación genética (>79%) PATRÓN U • 4(1,5%) • Clon pediátrico– relación genética (79%) PATRÓN D RESULTADOS
  • 32. • ST1110 - 2 aislamientos Clon Chileno – gen arcC • ST1111 – 1 aislamiento Clon Pediátrico – gen arcC ANÁLISIS POR MLST RESULTADOS
  • 33. RESULTADOS TIPIFICACION POR SCCmec Patrón U 82 – Tipo IVc / 3 – Tipo IVa / 1 – Tipo IVb Patrones F y D Tipo I y IV Patrón G 9 – Tipo II 1- Tipo I
  • 34. RESULTADOS Factores de Virulencia • Genes sem, sen y seo (184), seg (173), sei (154) ------- Grupo de genes de la enterotoxina ( EGC ) • Toxina exfoliativa A (52 CA-MRSA y 171 HA-MSRA) • Toxina exfoliativa B (4) • Genes sej and seg (2 HA-MRSA) • Genes sek, seq y lukF-PV/luckS-PS (CA –MRSA) • Proteínas de unión a fibronectina A y B (CA-MRSA)
  • 37. RESULTADOS MORTALIDAD • Relación entre la mortalidad y la infección por HA – MRSA en comparación con CA-MRSA ( 21 vs 10,6 %) • Aumento en mortalidad en pacientes con bacteriemia (45,9%), neumonía ( 43,8%), en comparación con infección en el sitio quirúrgico (10,8%) • Existen relación directos entre factores de virulencia y patologías desarrolladas
  • 39. DISCUSSION INVESTIGATORS IDEA AGREE OR DISAGREE Ferry T, Thomas D, Genestier AL, Bes M, et al. Described a greater prevalence of the egc – positive isolates recovered from surfaces infections compared to invasive infections. Ferry T, Thomas D, Genestier AL, Bes M, et al Observed a negative relationship between the egc cluster and clinical severity
  • 40. DISCUSSION INVESTIGATORS IDEA AGREE OR DISAGREE Van Belkun A, Melles DC, Snijders SV et al They did not find any evidence of an association of the egc cluster with mortlity in patients with MRSA- related bacteremia. Bae IG, Tonthat GT, Stryjewsky ME et al They found a paradoxically higther rate of clinical healing through the presence of some adhesive genes
  • 42. CONCLUSIONS *Staphylococcus aureus is a microorganism that causes problems in hospitals, because when people go to the hospital for many surgeries can be infected with the organism *The high quantity of isolates of MRSA are a major problem for a treatment, this microorganism is difficult to eradicate because when we want kill the pathogen agent, we found that each clones of MRSA has a important number of isolates with genomic differences between its.
  • 43. CONCLUSIONS *The types of MRSA ( USA300-0114, pediatric y Chilean ) has many genes that generate the different between its, that to permite separate the isolates in families. The genetic variability is essential as a survival mechanism of the organism. *This article is very important because the investigators developed a study for explain the molecular and genetic causes in Staphylococcus aureus infection, based in identify the genetic variability, then when they identified the genes that generate differences between clones, the investigators found the relationship between genes and diseases
  • 44.