SlideShare a Scribd company logo
1
Bacteremia:
An agr-Status Independent Infection
By: Samantha Lau
2
Abstract:
Staphylococcus aureus is the cause of many hospital-acquired infections. When it
colonizes an individual, it is usually found on the skin, in the anterior nares or in the
bloodstream. It was hypothesized that the isolates in the bloodstream are of the same mutant as
those in the anterior nares. To test this hypothesis, cultures from both the blood and the anterior
nares of patients infected with Staphylococcus aureus bacteremia, and cultures from only the
anterior nares of patients that were not infected with Staphylococcus aureus were collected. The
agr-status, mutations and repeats of the cultures collected were determined by cross-streaking
colonies from diluted bacterial solutions, by extracting the DNA of the colonies, and by spa
typing them to sequence the DNA. In comparing the agr-status of the cultures from the anterior
nares and from the blood, it was found that the agr-status of the cultures were the same.
Furthermore, it was found that mutations and repeats of the cultures from the anterior nares and
from the blood were identical. Therefore, it was concluded that patients are colonized by
Staphylococcus aureus strains of one mutant, and that the hypothesis that cultures in the
bloodstream are derived from the isolates in the anterior nares was supported. It was also
concluded that the agr-status of the strain does not affect the probability of developing a
Staphylococcus aureus infection.
3
Introduction:
The spread of bacterial infections, particularly that of Staphylococcus aureus infections,
has been a longstanding issue. Staphylococcus aureus is associated with many respiratory
infections. Between 1979 and 1995, it caused at least 13% of the hospital-acquired infections and
about 10% to 40% of the infections resulting from nasal carriage of the bacteria (von Eiff, 2001).
The infections caused by S. aureus range from infections as small as food poisoning, diarrhea
and dehydration to infections as large as toxic shock syndrome, pneumonia and scalded skin
syndrome (Lowy, 1998). Usually located on the skin and in the nose of 25% to 30% of healthy
individuals, S. aureus only causes a problem when it passes the skin barrier and is given access
within the body (Traber, 2008). To treat severe infections, antibiotics are given based on the S.
aureus strain’s likelihood to be affected by antibiotics. However, certain strains cannot be treated
by antibiotics, including Methicillin-resistant Staphylococcus aureus (MRSA) (Novick,2008). In
order to prevent infections, such as these, the spread of S. aureus infections must be understood.
This study expanded on the mechanisms behind this spread by examining the relationship
between the blood and nasal S. aureus isolates.
One mechanism of the spread is the quorum sensing system, which is the system that
allows S. aureus to communicate with other cells, control its virulence and form biofilms. This
system is encoded for by the agr locus, a two-component signaling unit that consists of a sensor
and a response regulator. The agr locus is comprised of the four genes agrD, agrB, agrC and
agrA. These four genes are able to control virulence by regulating the amount of toxins released.
Their interaction to bring about the regulation of virul0ence involves agrD being processed
through agrB and being secreted as an AIP (autoinducing peptide). The AIP then attaches to the
receptor agrC, where a phosphate is attached to the AIP. Afterwards, the AIP is transferred to
agrA, which activates transcription from the promoters P2 and P3. P2 allows the continuation of
the cycle; P3 causes the development of toxins. Therefore, a strain is identified as agr-defective,
or agr-negative, when agr expression through this interaction between the genes is no longer
carried through, and identified as agr-positive when agr expression is carried through.
In addition to the quorum sensing system, another mechanism of the spread is the
continued production of AIPs, or autoactivating peptides, by agr-defective strains. This
4
mechanism was determined through a study that hypothesized that agr-defective S. aureus can be
transmitted and that they are mostly acquired at hospitals (Shopsin, 2008). As a result of testing
this hypothesis, it was determined that hemolytic and nonhemolytic strains only differ in one
locus and are therefore identified as congenic (Shopsin, 2008). It was theorized that this most
likely results from the fact that agr-defective strains derive from agr-positive stains. Furthermore,
it was observed that agr-positive strains generate a greater amount of exoproteins in comparison
to agr-defective strains (Shopsin, 2008). However, it was concluded that even though agr-
defective strains do not produce many exoproteins, they continue to produce AIPs. It was also
established that agr-defective strains are associated with hospitals, since all of the subjects that
had agr-defective strains had either indirectly or directly been associated with the hospital. Two
of the subjects were hospitalized, one had a sibling who was hospitalized, four were born at the
hospital and three were postpartum mothers (Shopsin,2008). In addition to this, it was concluded
that agr-defective strains can be transmitted as a result of seven cases in which a subject with
agr-defective strains had family members with S. aureus strains (Shopsin,2008). Therefore, the
hypothesis that agr-defective S. aureus was associated with hospitals and that agr-defective S.
aureus could be transmitted were supported. This study is significant, since agr-defective strains
are not usually present in healthy individuals. Hence, by knowing if agr-defective strains can be
transmitted, among whom they normally transmit and where they usually begin to colonize,
strategies can be developed to prevent them from colonizing, and in turn prevent S. aureus
infections from arising.
Mechanisms of the spread of S. aureus also include the transfer of S. aureus in the nose to
the bloodstream. To examine the relationship between S. aureus in the bloodstream and in the
nose, researchers involved in this study genotyped nasal and blood cultures with the use of
pulsed-field gel electrophoresis (PFGE ) (von Eiff, 2001). The sequences of the cultures were
then compared to determine if a relationship existed. It was concluded that the cultures from the
bloodstream and from the nose were identical, since 82.2% of the cultures from the bloodstream
were clones of the cultures from the anterior nares (von Eiff, 2001).
To expand on this mechanism of the spread of S. aureus infections, this experiment
examined the relationship between the agr-status and mutations of the cultures in the blood and
of the cultures in the anterior nares. The hypothesis of this experiment was that the S. aureus
5
cultures in the blood originate from the cultures in the anterior nares. This hypothesis was
approached by examining the agr-status of the cultures, examining the mutations of the cultures
and determining the repeats of the cultures. An unexpected finding that came from this
examination of the agr-status of the cultures was that the agr-status of the colonies does not
influence whether or not those colonies will only colonize or will infect the body.
Materials and Methods:
Cell Cultures
The cell cultures used for the experiment were provided by Dr. Karsten Becker from
Universitätsklinikum Münster Institut für Medizinische Mikrobiologie. They were collected
during two different studies. In the first study, the isolates were obtained between November
1993 and September 1994 from the health care centers of thirty-two hospitals. These isolates
were collected from both the blood and the anterior nares of patients infected with S. aureus
bacteremia. The patients involved in this study had completed case-record forms that relayed
information about their date of birth, identification number and location in the hospital. In the
second study, the isolates were obtained between June 1994 and June 1999 from the anterior
nares of colonized patients. If the patients developed bacteremia during the course of the five-
year study, isolates from their blood were also collected. The types of cell cultures used for the
experiment included cultures from the blood and from the anterior nares of infected patients, and
cultures from the anterior nares of colonized patients. The cultures from the anterior nares of
colonized patients acted as controls. These cultures were placed in CYGP medium, snap frozen
with the use of dry ice and stored at -80 degrees Celsius. This was done because the cultures
needed to be placed in a setting where they were inactive to maintain their initial states. In
preparing these cultures, the frozen samples of the isolates were thawed, plated on GL plates and
maintained at 37 degrees Celsius in an incubator. The frozen samples were plated on GL plates,
since the strains needed to be “waken up” to proceed with genotyping them.
Dilution of the Blood and Nasal Cell Cultures
Bacterial dilution is the process of making a sample of colonies less concentrated. For
the dilution, 1 glass culture tube with 2 mL of the medium TSB, 1 eppendorf with 990 μL of
TSB, 1 eppendorf with 190 μL of TSB and 1 eppendorf with 133 μL of TSB were prepared
(Dilutions). The glass culture tube was then inoculated with a sample of isolates to a 0.5
6
McFarland Standard. Afterwards, 10 μL from the glass culture tube was placed in the eppendorf
containing 990 μL of TSB, and 10 μL of the resulting mixture was placed in the eppendorf
containing 190 μL of TSB. Next, 7 μL of the resulting mixture was placed in the eppendorf
containing 133 μL of TSB. As each of these dilutions were completed, the mixtures were
thoroughly vortexed with the use of the Vortex Genie 2. 20 μL from the resulting solution was
then spread on warmed sheep blood plates to determine if the cultures were hemolytic,
nonhemolytic or mixed. If this process was not completed, there would have been too many
cultures. Having too many cultures would result in the overlapping of the cultures, which was
not ideal for the picking of individual cultures during the cross-streaking of the colonies.
Cross-streaking of the S. aureus Colonies
During the process of cross-streaking, a colony was chosen based on its hemolysis from
the 100 colonies produced by the 0.5 McFarland dilution. The plastic end of a sterile cotton swab
was then used to streak the strain RN4220, which produced a lot of beta-hemolysins, down the
center of a warmed sheep blood plate. Afterwards, the chosen colony was touched with the
plastic end of a sterile cotton swab, and streaked perpendicular to the strain RN4220. The sheep
blood plate was then maintained at 37 degrees Celsius in an incubator. By plating the culture
against a strain that produced a lot of beta-hemolysins, it could be determined whether or not the
culture released delta-hemolysins.
DNA Extraction of the S. aureus Colonies
To extract chromosomal DNA by mechanical lysis, the culture was first prepared by
inoculating broth with the culture. In inoculating the broth, a Bunsen burner was used to sterilize
a loop. The sterilized loop was then used to pick a single colony. The chosen single colony was
then placed in 2 mL of broth using a gentle twisting motion. The resulting broth was placed in a
shaking incubator at 37 degrees Celsius.
After the culture was prepared, 2 mL of it was spun down at 13.2 k for 10 minutes in an
Eppendorf 5415 centrifuge. Next, the supernatant was disposed of and the pellet was
resuspended in 300 μL of Tissue Cell Lysis Solution. The resulting mixture was then placed in a
bead beater tube filled with 1 mm of beads and beated at 6k for 20 seconds in a Savant FastPrep
bead beater machine. To pellet the beads, the tubes were then spun at 13.2 k for 10 minutes.
Once the beads were pelleted, the supernatant was aspirated using of a pipette and placed in a 1.5
7
mL eppendorf with 150 μL of MPC Protein Solution. The tube was then overturned several times
and spun at 13.2 k for 10 minutes in the centrifuge. Following this, the supernatant was aspirated
and placed in a 1.5 mL eppendorf containing 500 μL of ice cold isopropyl. The eppendorf was
then overturned several times and spun at 13.2 k for 10 minutes in the centrifuge to pellet the
DNA. To thoroughly wash the DNA, the supernatant was disposed of, and the eppendorf was
filled with 500 μL of 75% ethanol and spun at 13.2 k for 5 minutes. This step was repeated
twice. Then, the ethanol was poured off, and the eppendorf was left to dry for 3 to 4 hours. After
the eppendorf had completely dried, the pellet was resuspended in 50 μL of distilled water.
This process for DNA extraction is designed to allow for breaking cells open, removing
lipids, proteins and RNA, and precipitating the DNA (DNA Extraction).
PCR of the Extracted DNA
To prepare for PCR, 2 μL of DNA was placed in a 25 μL master mix of nucleotides,
magnesium and tac polymerase, 19 μL of water, 2 μL of the forward primer and 2 μL of the
reverse primer. The forward and reverse primers used were made by vortexing a mixture of
either 10 μL of agrF or agrR aliquots and 240 μL of sterile distilled water. Once the mixture of
was created, it was placed in the Vapo.protect Eppendorf PCR machine.
Gel electrophoresis of the Blood and Nasal Colonies
Gel electrophoresis sorted the DNA by size and charge. To complete gel electrophoresis,
the gel was first made by heating a mixture of 50 mL of TBE and .5 g of agarose until it
appeared clear. When the temperature of the gel fell to 60 degrees Celsius, Ethidium bromide
was added to detect the DNA after gel electrophoresis was completed. After the Ethidium
bromide was thoroughly mixed into the gel, the gel was poured into a casting tray with stoppers.
Wells were then in the gel with a comb. Once the gel solidified, an adequate amount of buffer
was added. 5 μL of the ladder, of each of the DNA and of the dye mixtures were then loaded into
the wells. The gel electrophoresis was then turned on. The process confirmed if the DNA
amplified through PCR was the strand intended to be amplified by the number of base pairs that
appeared.
spa Typing of the S. aureus DNA
spa typing is the discrimination of the S. aureus for the sequencing of the DNA (Koreen,
2011). It involved finding and labeling the tandem repeats, the parts of the sequence that repeat
8
themselves consecutively (Strommenger, 2006). Once all the tandem repeats were labeled, the
labels were placed in the order that the tandem repeats appeared.
Instead of spa typing, an alternate method that could be used in this experiment was
PFGE, or pulsed-field gel electrophoresis. PFGE broke up the large DNA molecules with the use
of an electric field (Joppa, 1992). MLEE, or multi-locus enzyme electrophoresis, could also be
used in place of spa typing. MLEE involved distinguishing the bacteria using cellular enzymes
(Chang Bioscience). However, spa typing was used instead of these methods because it
sequenced the DNA better and, therefore, discriminated it more effectively.
Statistical Analysis
After the data had been gathered, the results obtained for the strains from the blood were
placed next to the corresponding strains from the anterior nares to see if any correlation existed.
The characteristics of the strains that were primarily compared included their agr-status, their
gene sequence repeats and their mutations.
Results:
Bacteremia derives from the Staphylococcus aureus in the anterior nares.
Results showed that the agr-status of the isolates in the nose is the same as the agr-status
of the corresponding isolates in the blood, as shown by Figure 1a. This is supported by the fact
that the agr-status of both the nasal colonies and blood colonies in Patient #3 is positive. This
was established by plating the diluted samples of the cultures on sheep blood plates and by using
the method of cross-streaking, as illustrated by Figure 1b and 1c. Since the results showed that
thee agr-status of the nasal isolates and the corresponding blood isolates were the same, it was
concluded that bacteremia derives from S. aureus cultures in the nose.
9
Patient # Nasal # Nasal cross-
streak
Blood # Blood cross-
streak
3 11 + 3 +
4 13 - 4 -
13 39 - 13 -
26 75 - 26 -
27 78 + 27 +
28 82 + 28 +
30 89 + 30 +
32 96 + 32 +
37 116 + 37 +
40 123 + 40 +
41 125 + 41 +
42 127 + 42 +
43 130 + 43 +
44 132 + 44 +
45 135 + 45 +
47 140 + 47 +
49 144 + 49 +
50 147 + 50 +
52 155 + 52 +
78 253 + 78 +
84 272 + 84 +
85 277 + 277 +
87 284 + 87 +
88 287 + 88 +
91 295 - 91 -
92 298 + 92 +
93 301 + 93 +
95 311 + 95 +
96 314 + 96 +
Figure 1a. The agr-status of isolates in the blood was the same as the agr-status of the
corresponding isolates in the anterior nares.
The agr-status of the isolates in the blood and in the anterior nares was determined by cross-
streaking the strains, as described in the Materials and Methods section. By cross-streaking, it
was determined that the agr-status of the isolates in the blood was the same as the agr-staus of
the nasal isolates, which implied that bacteremia derives from the nasal colonies.
10
Figure 1b. Cross-streaking allowed for the determination of whether a strain was hemolytic
or not.
Cross-streaking showed whether or not a strain produced delta-hemolysins based on whether or
not there was a clearing. It also showed the strength of the strain’s hemolytic activity based on
the intensity of the clearing.
Figure 1c. The agr-status of the blood isolates and of the nasal isolates was compared with
the use of cross-streaking.
Cross-streaking visually showed the correlation between the agr-status of cultures from the blood
and cultures from the anterior nares.
11
As well as showing that the agr-status of the blood isolates and the nasal isolates was the
same, the results supported the conclusion that the S. aureus isolates in the blood derived from
the S. aureus isolates in the anterior nares by demonstrating that the mutations that occurred in
the blood colonies were the same as the mutations that occurred in the corresponding nasal
colonies, as shown by Figure 2a. This was determined with the use of spa typing, a procedure
described in the Materials and Methods section. The three types of mutations that were found
included single-nucleotide polymorphism (SNP), insertion sequence (IS), base pair insertion (+)
and base pair deletion (-), as shown by Figure 2b. Single-nucleotide polymorphism occurred
when a nucleotide in a genome differed within the paired chromosomes (SNP Fact Sheet). A
DNA sequence was identified as an insertion sequence if it was short and could move in the
genome (Schoenmakers, 2010). Base pair insertion occurred when nucleotide base pairs were
added in a DNA sequence, and base pair deletions occurred when nucleotide base pairs were
removed from a DNA sequence (Leong, 1985). These mutations are significant because they
influenced gene expression.
Patient # Nasal # Nasal Mutation Blood # Blood Mutation
4 13 118-IS256 4 118-IS256
13 39 t551a 13 t551a
26 75 a409 (-1 bp) 26 a409 (-1 bp)
78 253 c771t, c583t 78 c771t, c583t
91 295 t313 (+1 bp) 91 t313 (+1 bp)
143 466 c461a 143 c461a
147 484 a86c 147 a86c
171 564 t352 (+1 bp) 171 t352 (+1 bp)
180 595 g571a 180 g571a
Figure 2a. The mutations that occurred in the isolates in the blood were the same as the
mutations that occurred in the nasal isolates.
The mutations that occurred in both the blood and the nasal isolates were found with the use of
spa typing, as described in the Materials and Methods section. As a result of spa typing, it was
determined that the mutations in the isolates in the blood and in the corresponding nasal isolates
were the same.
12
Figure 2b. Three types of mutations were identified in several of the isolates.
The three types of mutations that were found in the isolates were base pair insertion, base pair
deletion, single-nucleotide polymorphism and insertion sequence.
In addition to showing that the mutations in the blood and nasal isolates were the same,
the results supported the fact that bacteremia derived from nasal isolates by showing that the
genetic sequences of the cultures from the blood and the corresponding cultures from the anterior
nares were the same, as shown by Figure 3.
Colonies IS Element SNP BP Insertion/
Deletion
Blood 2 4 2
Nasal 1 3 4
13
Patient # Nasal # Nasal Repeats Blood # Blood Repeats
1 4 UJGGBBGGJAGJ 1 UJGGBBGGJAGJ
2 8 YGFMBQBLQBLPO 2 YGFMBQBLQBLPO
3 11 WGKAKAOMQQ 3 WGKAKAOMQQ
4 13 YHFGFMBQBLO 4 YHFGFMBQBLO
5 18 UJGBBGGJAGJ 5 UJGBBGGJAGJ
6 21 ZDGMDMGMM 6 ZDGMDMGMM
7 23 UJGBBGGJAGJ 7 UJGBBGGJAGJ
9 28 ZDGMDMGMM 9 ZDGMDMGMM
10 30 XKAKB 10 XKAKB
11 35 UBGGJAGJ 11 UBGGJAGJ
12 37 ZFGU2DMGGM 12 ZFGU2DMGGM
13 39 UJGBBGGJAGJ 13 UJGBBGGJAGJ
14 42 XKAKBEMBKB 14 XKAKBEMBKB
15 44 YGFMBQBLPO 15 YGFMBQBLPO
16 47 XKAKBEMBKB 16 XKAKBEMBKB
17 49 ZDGMDMGMM 17 ZDGMDMGMM
18 51 UJFMEBKBPE 18 UJFMEBKBPE
19 54 WGKAKAOM 19 WGKAKAOM
20 57 YHGFMBQBLO 20 YHGFMBQBLO
21 59 YHGFMBQBLO 21 YHGFMBQBLO
22 61 WGKAKAOMQ 22 WGKAKAOMQ
26 75 ZDGMDMGMMM 26 ZDGMDMGMMM
27 78 I2Z2DZ2EGMMJH2M 27 I2Z2DZ2EGMMJH2M
28 82 YGFMBQBLO 28 YGFMBQBLO
30 89 ZFGU2 30 ZFGU2
32 96 UJFMEBKBPE 32 UJFMEBKBPE
37 116 I2Z2EGMMJH2M 37 I2Z2EGMMJH2M
40 123 WGKAKAOMQQQ 40 WGKAKAOMQQQ
41 125 ZDGMDMGMM 41 ZDGMDMGMM
42 127 YHFGFMBQBLO 42 YHFGFMBQBLO
43 130 UJGBBGGJAGJ 43 UJGBBGGJAGJ
Figure 3. The genetic sequences of the isolates from the blood and from the anterior nares
were the same.
The genetic sequences of both the nasal and blood cultures were determined with the use of spa
typing. Since the genetic sequences of the nasal isolates and of their corresponding blood
isolates were the same, it was concluded that the blood cultures derive from the nasal cultures.
agr-status of Staphylococcus aureus isolates in patients does not affect the probability of
becoming infected with Staph.
Results showed that the agr- status of S. aureus colonies in patients is not a determining
factor of whether or not the patients become infected with Staph. The results indicated this, since
14
the percentage of agr-defectives in the nasal and blood isolates from infected patients was the
same as the percentage of agr-defectives in the nasal isolates from non-infected patients. This
implied that agr-defectives can as easily colonize infected patients as they can colonize non-
infected patients.
Infecting Non-Infecting
agr-status Nasal
(188)
Blood
(231)
Nasal
(209)
agr (+) 175 210 187
agr (-) 13 21 22
%agr (-) 6.91 9.09 10.53
Figure 4. The agr-status of S. aureus isolates did not influence whether or not a patient was
infected with Staph.
The percentage of agr-defectives in the nasal and blood isolates of infected patients was similar
to the percentage of agr-defectives in the nasal isolates of non-infected patients.
Discussion:
The goal of this experiment was to determine if the isolates from the blood derive from
the nasal isolates. The results showed that the hypothesis that colonies from the blood derive
from nasal isolates was supported. This is due to the fact that the agr-status of the isolates in the
blood and of the isolates in the anterior nares was the same. The mutations and repeats of the
isolates from both areas of colonization were the same as well. In addition to this, the results
showed that the agr-status of S. aureus strains does not influence whether or not it will infect a
patient. These results reinforced the results of the study completed by von Eiff in 2001, which
also concluded that the isolates from the blood and the nose were related by implementing
similar techniques to those used in this study. These results are significant due to the fact that a
large number of people carry Staphylococcus aureus on a regular basis.
About 25% to 30% of people carry Staphylococcus aureus isolates, and a large number
of them carry strains that often modify themselves. Although these isolates are more dangerous
to breastfeeding women, people with diabetes, people with cancer, and children, they are
commonly present in everyone. Therefore, many are susceptible to Staphylococcus aureus
infections, since it was found that they derive from the colonies in the anterior nares. As a result
of this, the nasal colonies must be eliminated to reduce the number of infections caused by
Staphylococcus aureus and, in turn, stop the cycle of transfer.
15
To eliminate the nasal colonies, they must be treated with an ointment. The nasal
ointment that is currently the most commonly used is mupirocin, a topical antibiotic that is not
useful in acting against viral or fungal infections. It reduces the number of infections caused by
Staphylococcus aureus by prohibiting protein synthesis. As documented by Wertheim, mupirocin
allows for the elimination of 91% of the nasal colonies (Wertheim, 2004). In addition to
mupirocin, bacitracin and rifampin may be used to eliminate the nasal colonies. However, they
are not as effective, since rifampin only eliminates 79% of the nasal colonies, while bacitracin
only eliminates 44% of the nasal colonies.
To expand on this study, mupirocin should be further examined. This is because although
mupirocin supports a reduction in the prevalence of bacteremia, it is not highly effective. As
shown by Rahman’s study, several strains of Staphylococcus aureus have developed that are
highly resistant to mupirocin (Rahman, 1988). Mupirocin is also not highly effective because it
does not prevent the colonization of extranasal locations and usually results in colonization with
exogenous strains. Therefore, a study can be conducted to develop a more efficient way of
eliminating the isolates in the anterior nares.
This more efficient way of eliminating the isolates in the anterior nares will most likely
involve disrupting the quorum sensing system because the quorum sensing system allows S.
aureus to communicate with other cells, control its virulence and form biofilms, which are
groups of microorganisms found on solid substrates (Teng,2011). Biofilms are created when
free-floating microorganisms attach to a surface and begin dividing or incorporating other
microorganisms (Yarwood, 2004). Being a part of these structures are beneficial for bacteria,
since they provide security by heightening the resistance to detergents and antibiotics
(Yarwood,2004). This quorum sensing system regulates these functions of S. aureus with the
accessory gene regulator (agr) locus.
The agr locus reduces the expression of surface proteins and increases the expression of
exotoxins (Shopsin,2008). Therefore, it supports S. aureus’s expression of virulence and adds to
the severity of infections, such as murine subcutaneous abscesses, which are abscesses situated
beneath the skin. The agr locus assists S. aureus’s expression of virulence and heightens the
severity of infections by encoding for the secretion of AIPs, or autoactivating peptides (Muir,
2009). AIPs are types of autoactivators, which are molecules that induce their own synthesis
16
(Geisinger,2008). Their density is correlated with the local population. This means that as the
local population increases, the density of AIPs increases, which is significant due to the fact that
once the density of the AIPs reaches a certain amount, the entire population coordinates and acts
as one (Muir, 1216). An example of bacteria’s use of AIPs to coordinate is bioluminescence,
since bioluminescent bacteria only glow when their density is high enough (Geisinger, 2008).
Variations in AIPs arise from variations in their ogliopeptide sequences (Ji,2011). These AIPs
are administered by agrD. agrD is only one of the four genes in the operon of the agr locus,
which also consists of agrB, agrC and agrA..
Variations in the agr locus derive from differences in the AIPs, agrB and agrC. The
different agr loci are categorized into four agr specificity groups (Jarraud, 2000). These
variations in the agr locus originate from heterologous interactions between the AIP and agrC.
This is because the heterologous interactions between the AIP and agrC lead to the interference,
which, in turn, results in a change in the accessory gene expression (Muir,2009). Therefore, the
isolates in the anterior nares can be disrupted by obstructing agrC and agrB.
In addition to this research based on determining a more efficient way of eliminating
isolates in the anterior nares, research can be done to determine if bacteremia also derives from
S. aureus colonies on other sites of the body besides the anterior nares, such as other mucous
membranes and the skin. This would allow for the full examination of the derivative of infections
caused by Staphylococcus aureus.
Acknowledgements:
I would like to thank all the people that helped make the completion of this project
possible. I would first like to thank Mr. Richard Lee for encouraging me to participate in the
research program, for helping me find a lab suitable to my interests, and for supporting me in the
writing of this paper. I would also like to thank those that helped me in the Skirball Institute at
New York University. I would particularly like to thank Dr. Richard Novick for providing me
with the opportunity to work at the lab and Dr. Bo Shopsin and Mr. Gregory Wasserman for
guiding me in completing this project and making the experience at lab pleasant. Without the
support of Dr. Bo Shopsin and Mr. Gregory Wasserman, this project would not have been
achievable.
17
Bibliography:
Bennett, Nicholas J. “Bacteremia.” Medscape. Web.
<http://emedicine.medscape.com/article/961169-overview>.
“Multi-Locus Enzyme Electrophoresis (MLEE).” Chang Bioscience.
<http://www.changbioscience.com/primo/pcr/eMultisLocussEnzymesE.htm>.
Chen, John, Novick, Richard P. “Phage-Mediated Intergeneric Transfer of Toxin Genes.”
Science. 323. 139. Print.
“Dilutions.” Wellesley College. < http://www.wellesley.edu/Biology/Concepts/index.html>.
“DNA Extraction.” Carleton College.
<http://serc.carleton.edu/microbelife/research_methods/genomics/dnaext.html>.
Ena J, Boelaert JR, Boyken LD, Van Landuyt HW, Godard CA, Herwaldt LA. Epidemiology of
Staphylococcus aureus infections in patients on hemodialysis. Infect Control Hosp
Epidemiol 1994;15:78-81.
Geisinger, Edward, Muir, Tom W., Novick, Richard P. "agr receptor mutants reveal distinct
modes of inhibition by staphylococcal autoinducing peptides." PNAS. 106.4 (2009):
1216-1221. Print.
Geisinger, Edward, & Novick, Richard P. “Quorum Sensing in Staphylococci.” The
Annual Review of Genetics 42 (2008): 541-564.
Jarraud, S., Lyon, G.J., Figueiredo, A.M.S., Vandenesch, F. “Exfoliatin-Producing Strains
Define a Fourth agr Specificity Group in Staphylococcus aureus.” Journal of
Bacteriology. 182:22 (2000). Print.
Ji, Guangyong, Pei, Wuhong, Zhang, Linsheng, Qiu, Rongde, Lin, Jianqun, Yvonne,
Benito, Lina, Gerard, & Novick, Richard P. “Staphylococcus intermedius
Produces a Functional agr Autoinducing Peptide Containing a Cyclic Lactone.”
American Society for Microbiology 187.9 (2005): 3139-3150. Web. 2 Feb 2011. <
http://jb.asm.org/cgi/content/full/187/9/3139>.
Joppa, Barbara. “Pulsed Field Electrophoresis for Separation of Large DNA.” Probe 2.3 (1992).
<http://www.nalusda.gov/pgdic/Probe/v2n3/puls.html>.
Kluytmans, JA, Mouton, JW, Ijzerman, EP, et al. “Nasal carriage of Staphylococcus aureus as a
major risk factor for wound infections after cardiac surgery.” J Infect Dis(1995);171:216-
9.
Koreen, Larry, Ramaswamy, Srinivas V., Graviss, Edward A., Naidich, Steven, Musser, James
18
M., Kreiswirth, Barry N. “spa Typing Method for Discriminating among Staph. aureus
Isolates.” Journal of Clinical Microbiology 42.2(2004): 792-799. Web. 2 Feb 2011.
<http://jcm.asm.org/cgi/content/full/42/2/792>.
Leong, J.M.p; Nunes-Düby, S.E.; Landy, A. “Generation of single base-pair deletions, insertions,
and substitutions by a site-specific recombination system.” PNAS 82.20 (1985): 6990-
6994. Web.
Lowy, Franklin D. “Staphylococcus Aureus Infections.” The New England Journal of Medicine.
Print.
Mayville,Patricia, Ji, Guangyong, Beavis, Ronald, Yang, Hongmei, Goger, Micheal, Novick,
Richard P. "Structure-activity analysis of synthetic autoinducing thiolactone peptides
from Staphylococcus aureus responsible for virulence ." PNAS. 96.4 (1998): 1218-1223.
Print.
Mehta, Pankaj, Goyal, Sidhartha, Long, Tao, Bassler, Bonnie L., Wingreen, Ned S.
“Information processing and signal integration in bacterial quorum sensing.”
Molecular Systems Biology 5:325 (2009). Web. 2 Feb 2011. <
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2795473/>.
Ng, Wai-Leung, Wei, Yunzhou, Perez, Lark J., Cong, Jianping, Long, Tao, Koch,
Matthew, Semmelhack, Martin F., Wingreen, Ned S., & Bassler, Bonnie L.
“Probing bacterial transmembrance histidine kinase receptor-ligand interactions
with natural and synthetic molecules.” PNAS 107.12 (2010): 5575-5580. Web. 2
Feb 2011. <
http://pubget.com/search?q=authors%3A%22Jianping%20Cong%22>.
Novick, Richard P., Christie, Gail E., Penades, Jose R. “The Phage-related Chromosomal
Islands of Gram-positive Bacteria,” Nature Reviews: Microbiology, 8. Print.
Novick, Richard P., Maiques, Elisa, Ubeda, Carles. “Beta-Lactam Antibiotics Induce the SOS
Response and Horizontal Transfer of Virulence Factors in Staphylococcus aureus.”
Journal of Bacteriology. 188.7 (2006). Print.
Novick, Richard P. Medicine. Combating impervious bugs [comment]. Science. 2008 Feb
15;319(5865):910-1.
Novick, Richard P. MRSA: RIP? Scientist. 2008 FEB;22(2):14-15.
“PCR.” NCBI. < http://www.ncbi.nlm.nih.gov/projects/genome/probe/doc/TechPCR.shtml>.
“PCR Virtual Lab.” The University of Utah. < http://learn.genetics.utah.edu/content/labs/pcr/>.
19
Peters, Timothy R., Hammon, Dudley E., Jarrah, Rima J., Palavecino, Elizabeth L.
“Staphylococcal Toxic Shock Syndrome Complicating Influenza A Infection in a Young
Child.” ISRN Pulmonology (2011).
“Polymerase Chain Reaction.” DNA Learning Center.
<http://www.dnalc.org/resources/animations/pcr.html>.
Rahman, Mary, Noble, W.C., Cookson, B. “Transmissible mupirocin resistance in
Staphylococcus aureus.” Epidem. Inf. (1989).
Roberts, Richard B. , de Lencastre , Alexandre, Eisner, William, Shopsin, Bo. “Molecular
Epidemiology of Methicillin-Resistant Staphylococcus aureus in 12 New York
Hospitals.” the MRSA Collaborative Study Group. The Journal of Infectious Diseases. 2
Feb 2011.
Schoenmakers, Erik; Agostini, Maura; Mitchell, Catherine; Schoenmakers, Nadia; Papp, Laura;
Rajanayagam, Odelia; Padidela, Raja; Ceron-Gutierrez, Lourdes; Doffinger, Rainer;
Prevosto, Claudia; Luan, Jian’an; Montano, Sergio. “Mutations in the selenocysteine
insertion sequence–binding protein 2 gene lead to a multisystem selenoprotein deficiency
disorder in humans.” J Clin Invest 120.12 (2010): 4220-4235.
Serafini, F; Bottacini, F; Viappiani, A; Baruffini, E; Turroni, F; Foroni, E; Lodi, T; van Sinderen,
D; Ventura, M. “Investigation of mupirocin susceptibility in bifidobacteria: physiological
and genetic insights.” Appl Environ Microbiol (2011). Web.
Shopsin, Bo; Drlica-Wagner, Alex; Mathema, Barun; Adhikari, Rajan P; Kreiswirth, Barry N;
Novick, Richard P. “Prevalence of agr dysfunction among colonizing Staphylococcus
aureus strains.” 2008 Oct 15;198(8):1171-4, Journal of infectious diseases.
Shopsin, Bo; Eaton, Christian; Wasserman, Gregory A; Mathema, Barun; Adhikari, Rajan P;
Agolory, Simon; Altman, Deena R; Holzman, Robert S; Kreiswirth, Barry N; Novick,
Richard P., “Mutations in agr do not persist in natural populations of methicillin-resistant
Staphylococcus aureus.” Journal of infectious diseases. 2010 Nov 15;202(10):1593-9.
“SNP Fact Sheet.” Human Genome Project Information.
<http://www.ornl.gov/sci/techresources/Human_Genome/faq/snps.shtml>.
Steinberg JP, Clark CC, Hackman BO. “Nosocomial and community acquired Staphylococcus
aureus bacteremias from 1980 to 1993: impact of intravascular devices and methicillin
resistance.” Clin Infect Dis (1996):23:255-9.
Strommenger, B.; Kettlitz, C.; Weniger, T.; Harmsen, D.; Friedrich, A. W.; Witte, W.
“Assignment of Staphylococcus Isolates to Groups by spa Typing, SmaI Macrorestriction
Analysis, and Multilocus Sequence Typing.” J Clin Microbiol 44.7(2006): 2533-2540.
20
Traber, Katrina E; Lee, Elsie; Benson, Sarah; Corrigan, Rebecca; Cantera, Mariela; Shopsin,
Bo; Novick, Richard P. “agr function in clinical Staphylococcus aureus isolates.”
Microbiology. 2008 Aug;154(Pt 8):2265-74.
Teng, Shu-Wen. “Signal Integration in Cell-to-Cell Communication.” (2010): 1-119.
Web. 2 Feb 2011. < http://www.princeton.edu/physics/academics/graduate-
program/theses/theses-from-2010/S.Tengthesis.pdf>.
Ubeda, Carles; Olivarez, Nicholas P; Barry, Peter; Wang, Huaibin; Kong, Xiangpeng;
Matthews, Avery; Tallent, Sandra M; Christie, Gail E; Novick, Richard P., “Specificity
of staphylococcal phage and SaPI DNA packaging as revealed by integrase and terminase
mutations.” Molecular microbiology. 2009 Apr;72(1):98-108.
Van Belkum, Alex. “40 years of methicillin resistant Staphylococcus aureus
MRSA is here to stay—but it can be controlled.” BMJ 323.7314(2001): 644-645. Web.
von Eiff, C. (2001). Nasal carriage as a source of staphylococcus aureus bacteremia. NEJM,
344(1), 11-16.
Wertheim, Heiman F.L., Verveer, Jeroen, Boelens, Helene A.M., van Belkum, Alex, Verbrugh,
Henri A., Vos, Margreet C. “Effect of Mupirocin Treatment on Nasal, Pharyngeal and
Perineal Carriage of Staphylococcus aureus in Healthy Adults.” Antimicrob Agents
Chemother (2005).
Yamada, Mizuho. “Ultrastructure of Pustules in Impetigo Herpeformis.” Journal of Cutaneous
Pathology 3.1: 35-40.
Yarwood, Jeremy M., Bartels, Douglas J., Volper, Esther M., Greenbery, E. Peter. “Quorum
Sensing in Staph. aureus Biofilms.” Journal of Bacteriology 186.6 (2004).
< http://jb.asm.org/cgi/content/full/186/6/1838>.

More Related Content

What's hot

PREVALENCE AND ANTIMICROBIAL SUSCEPTIBILITY OF ESBL IN SOKOTO PDF
PREVALENCE AND ANTIMICROBIAL SUSCEPTIBILITY OF ESBL IN SOKOTO PDFPREVALENCE AND ANTIMICROBIAL SUSCEPTIBILITY OF ESBL IN SOKOTO PDF
PREVALENCE AND ANTIMICROBIAL SUSCEPTIBILITY OF ESBL IN SOKOTO PDFNuhu Tanko
 
Trends in Antibiotic Resistance of Vibrio Cholerae Isolates in Kenya (2006 - ...
Trends in Antibiotic Resistance of Vibrio Cholerae Isolates in Kenya (2006 - ...Trends in Antibiotic Resistance of Vibrio Cholerae Isolates in Kenya (2006 - ...
Trends in Antibiotic Resistance of Vibrio Cholerae Isolates in Kenya (2006 - ...
paperpublications3
 
Bacterial Orchitis and Epididymo-orchitis in Broiler Breeders
Bacterial Orchitis and Epididymo-orchitis in Broiler BreedersBacterial Orchitis and Epididymo-orchitis in Broiler Breeders
Bacterial Orchitis and Epididymo-orchitis in Broiler Breeders
Rafael Monleon
 
Causes of Mortality in Two Commercial Turkey Strains Raised Concurrently Unde...
Causes of Mortality in Two Commercial Turkey Strains Raised Concurrently Unde...Causes of Mortality in Two Commercial Turkey Strains Raised Concurrently Unde...
Causes of Mortality in Two Commercial Turkey Strains Raised Concurrently Unde...
Rafael Monleon
 
Kridsada Sirisabhabhorn, Supaporn Pumpa, Surapong Pornprasitseang and Palakor...
Kridsada Sirisabhabhorn, Supaporn Pumpa, Surapong Pornprasitseang and Palakor...Kridsada Sirisabhabhorn, Supaporn Pumpa, Surapong Pornprasitseang and Palakor...
Kridsada Sirisabhabhorn, Supaporn Pumpa, Surapong Pornprasitseang and Palakor...
kridsada31
 
Life sci. J
Life sci. JLife sci. J
Life sci. J1611974
 
Citrobacter
CitrobacterCitrobacter
Citrobacter
Salman Majid
 
Immunology lab report
Immunology lab reportImmunology lab report
Immunology lab reportBrian Musalo
 
Staphylococcus nepalensis
Staphylococcus nepalensisStaphylococcus nepalensis
Staphylococcus nepalensis
Shyam Mishra
 
J Appl. Sci. Res.
J Appl. Sci. Res.J Appl. Sci. Res.
J Appl. Sci. Res.1611974
 
Nehad m. sayed (ain shams)1
Nehad m. sayed (ain shams)1Nehad m. sayed (ain shams)1
Nehad m. sayed (ain shams)1yousef2009
 
Microbiology
MicrobiologyMicrobiology
Microbiology
varshitha Nakka
 
5. diarheal diseases of E.coli Dr. Mahadi H Abdallah
5. diarheal diseases of E.coli  Dr. Mahadi  H  Abdallah5. diarheal diseases of E.coli  Dr. Mahadi  H  Abdallah
5. diarheal diseases of E.coli Dr. Mahadi H Abdallah
Mahadi Hassan Mahmoud Abdallah
 
Molecular detection of extended spectrum beta- lactamases in clinical isolate...
Molecular detection of extended spectrum beta- lactamases in clinical isolate...Molecular detection of extended spectrum beta- lactamases in clinical isolate...
Molecular detection of extended spectrum beta- lactamases in clinical isolate...
Alexander Decker
 

What's hot (20)

PREVALENCE AND ANTIMICROBIAL SUSCEPTIBILITY OF ESBL IN SOKOTO PDF
PREVALENCE AND ANTIMICROBIAL SUSCEPTIBILITY OF ESBL IN SOKOTO PDFPREVALENCE AND ANTIMICROBIAL SUSCEPTIBILITY OF ESBL IN SOKOTO PDF
PREVALENCE AND ANTIMICROBIAL SUSCEPTIBILITY OF ESBL IN SOKOTO PDF
 
Trends in Antibiotic Resistance of Vibrio Cholerae Isolates in Kenya (2006 - ...
Trends in Antibiotic Resistance of Vibrio Cholerae Isolates in Kenya (2006 - ...Trends in Antibiotic Resistance of Vibrio Cholerae Isolates in Kenya (2006 - ...
Trends in Antibiotic Resistance of Vibrio Cholerae Isolates in Kenya (2006 - ...
 
Bacterial Orchitis and Epididymo-orchitis in Broiler Breeders
Bacterial Orchitis and Epididymo-orchitis in Broiler BreedersBacterial Orchitis and Epididymo-orchitis in Broiler Breeders
Bacterial Orchitis and Epididymo-orchitis in Broiler Breeders
 
Causes of Mortality in Two Commercial Turkey Strains Raised Concurrently Unde...
Causes of Mortality in Two Commercial Turkey Strains Raised Concurrently Unde...Causes of Mortality in Two Commercial Turkey Strains Raised Concurrently Unde...
Causes of Mortality in Two Commercial Turkey Strains Raised Concurrently Unde...
 
Kridsada Sirisabhabhorn, Supaporn Pumpa, Surapong Pornprasitseang and Palakor...
Kridsada Sirisabhabhorn, Supaporn Pumpa, Surapong Pornprasitseang and Palakor...Kridsada Sirisabhabhorn, Supaporn Pumpa, Surapong Pornprasitseang and Palakor...
Kridsada Sirisabhabhorn, Supaporn Pumpa, Surapong Pornprasitseang and Palakor...
 
Life sci. J
Life sci. JLife sci. J
Life sci. J
 
Citrobacter
CitrobacterCitrobacter
Citrobacter
 
Immunology lab report
Immunology lab reportImmunology lab report
Immunology lab report
 
Staphylococcus nepalensis
Staphylococcus nepalensisStaphylococcus nepalensis
Staphylococcus nepalensis
 
J Appl. Sci. Res.
J Appl. Sci. Res.J Appl. Sci. Res.
J Appl. Sci. Res.
 
Research Proposal
Research ProposalResearch Proposal
Research Proposal
 
Nehad m. sayed (ain shams)1
Nehad m. sayed (ain shams)1Nehad m. sayed (ain shams)1
Nehad m. sayed (ain shams)1
 
ESBL.Pdf
ESBL.PdfESBL.Pdf
ESBL.Pdf
 
Esbl
EsblEsbl
Esbl
 
Formella Magdalena final project
Formella Magdalena final projectFormella Magdalena final project
Formella Magdalena final project
 
p_canis
p_canisp_canis
p_canis
 
BACTERIOLOGY GLYCOCALYX Sample
BACTERIOLOGY GLYCOCALYX SampleBACTERIOLOGY GLYCOCALYX Sample
BACTERIOLOGY GLYCOCALYX Sample
 
Microbiology
MicrobiologyMicrobiology
Microbiology
 
5. diarheal diseases of E.coli Dr. Mahadi H Abdallah
5. diarheal diseases of E.coli  Dr. Mahadi  H  Abdallah5. diarheal diseases of E.coli  Dr. Mahadi  H  Abdallah
5. diarheal diseases of E.coli Dr. Mahadi H Abdallah
 
Molecular detection of extended spectrum beta- lactamases in clinical isolate...
Molecular detection of extended spectrum beta- lactamases in clinical isolate...Molecular detection of extended spectrum beta- lactamases in clinical isolate...
Molecular detection of extended spectrum beta- lactamases in clinical isolate...
 

Similar to ResearchPaper

Prevalence of Aeromonas Species Among Patients Attending General Hospital Owerri
Prevalence of Aeromonas Species Among Patients Attending General Hospital OwerriPrevalence of Aeromonas Species Among Patients Attending General Hospital Owerri
Prevalence of Aeromonas Species Among Patients Attending General Hospital Owerri
pijans
 
Epidemiological and morphological investigation of tick borne disease.pptx
Epidemiological and morphological investigation of tick borne disease.pptxEpidemiological and morphological investigation of tick borne disease.pptx
Epidemiological and morphological investigation of tick borne disease.pptx
ShumailAyub3
 
Genotypic study documents divergence in the pathogenesis of bloodstream infec...
Genotypic study documents divergence in the pathogenesis of bloodstream infec...Genotypic study documents divergence in the pathogenesis of bloodstream infec...
Genotypic study documents divergence in the pathogenesis of bloodstream infec...
Danny Zuluaga
 
Crimson Publishers-Prevalence of Cryptosporidiosis Among Selected Group of Su...
Crimson Publishers-Prevalence of Cryptosporidiosis Among Selected Group of Su...Crimson Publishers-Prevalence of Cryptosporidiosis Among Selected Group of Su...
Crimson Publishers-Prevalence of Cryptosporidiosis Among Selected Group of Su...
CrimsonPublishersBioavailability
 
Differential Detection of Entamoeba dispar and Entamoeba moshkovskii Using ne...
Differential Detection of Entamoeba dispar and Entamoeba moshkovskii Using ne...Differential Detection of Entamoeba dispar and Entamoeba moshkovskii Using ne...
Differential Detection of Entamoeba dispar and Entamoeba moshkovskii Using ne...Hala Issa
 
Ascaris lumbricoides and other Gastrointestinal Helminthic Parasites among Qe...
Ascaris lumbricoides and other Gastrointestinal Helminthic Parasites among Qe...Ascaris lumbricoides and other Gastrointestinal Helminthic Parasites among Qe...
Ascaris lumbricoides and other Gastrointestinal Helminthic Parasites among Qe...
iosrjce
 
Identification of ticks and detection of blood protozoa in friesian cattle by...
Identification of ticks and detection of blood protozoa in friesian cattle by...Identification of ticks and detection of blood protozoa in friesian cattle by...
Identification of ticks and detection of blood protozoa in friesian cattle by...
Noor Zada
 
Isolation, identification and characterization of urinary tract infectious ba...
Isolation, identification and characterization of urinary tract infectious ba...Isolation, identification and characterization of urinary tract infectious ba...
Isolation, identification and characterization of urinary tract infectious ba...
Alexander Decker
 
Faecal Excretion of Salmonella Typhi During The Bacteraemic Phase of Typhoid ...
Faecal Excretion of Salmonella Typhi During The Bacteraemic Phase of Typhoid ...Faecal Excretion of Salmonella Typhi During The Bacteraemic Phase of Typhoid ...
Faecal Excretion of Salmonella Typhi During The Bacteraemic Phase of Typhoid ...
Alim A-H Yacoub Lovers
 
Serum Biochemical and Histopathological Changes in Rats Experimentally Infect...
Serum Biochemical and Histopathological Changes in Rats Experimentally Infect...Serum Biochemical and Histopathological Changes in Rats Experimentally Infect...
Serum Biochemical and Histopathological Changes in Rats Experimentally Infect...
SSR Institute of International Journal of Life Sciences
 
International Journal of Pharmaceutical Science Invention (IJPSI)
International Journal of Pharmaceutical Science Invention (IJPSI)International Journal of Pharmaceutical Science Invention (IJPSI)
International Journal of Pharmaceutical Science Invention (IJPSI)
inventionjournals
 
The Sensitivity Of 99mTc-Ciprofloxacin (Infecton) Scintigraphy Imaging To Det...
The Sensitivity Of 99mTc-Ciprofloxacin (Infecton) Scintigraphy Imaging To Det...The Sensitivity Of 99mTc-Ciprofloxacin (Infecton) Scintigraphy Imaging To Det...
The Sensitivity Of 99mTc-Ciprofloxacin (Infecton) Scintigraphy Imaging To Det...
iosrphr_editor
 
Materials​ ​and ​ ​methods Describe ​ ​the ​ ​staph ​ ​st
Materials​ ​and ​ ​methods  Describe ​ ​the ​ ​staph ​ ​stMaterials​ ​and ​ ​methods  Describe ​ ​the ​ ​staph ​ ​st
Materials​ ​and ​ ​methods Describe ​ ​the ​ ​staph ​ ​st
karenahmanny4c
 
s12917-021-03064-9.pdf
s12917-021-03064-9.pdfs12917-021-03064-9.pdf
s12917-021-03064-9.pdf
Nisar Ahmad
 
Laboratory diagnosis of visceral leishmaniasis
Laboratory diagnosis of visceral leishmaniasisLaboratory diagnosis of visceral leishmaniasis
Laboratory diagnosis of visceral leishmaniasis
Aman Ullah
 
Species distribution and virulence factors of coagulase negative staphylococc...
Species distribution and virulence factors of coagulase negative staphylococc...Species distribution and virulence factors of coagulase negative staphylococc...
Species distribution and virulence factors of coagulase negative staphylococc...
Alexander Decker
 
Astrovirus.pptx
Astrovirus.pptxAstrovirus.pptx
Astrovirus.pptx
kelvinrogie
 

Similar to ResearchPaper (20)

Prevalence of Aeromonas Species Among Patients Attending General Hospital Owerri
Prevalence of Aeromonas Species Among Patients Attending General Hospital OwerriPrevalence of Aeromonas Species Among Patients Attending General Hospital Owerri
Prevalence of Aeromonas Species Among Patients Attending General Hospital Owerri
 
bacteriospermia
bacteriospermiabacteriospermia
bacteriospermia
 
Epidemiological and morphological investigation of tick borne disease.pptx
Epidemiological and morphological investigation of tick borne disease.pptxEpidemiological and morphological investigation of tick borne disease.pptx
Epidemiological and morphological investigation of tick borne disease.pptx
 
Genotypic study documents divergence in the pathogenesis of bloodstream infec...
Genotypic study documents divergence in the pathogenesis of bloodstream infec...Genotypic study documents divergence in the pathogenesis of bloodstream infec...
Genotypic study documents divergence in the pathogenesis of bloodstream infec...
 
Dr d p rajani
Dr d p rajaniDr d p rajani
Dr d p rajani
 
Crimson Publishers-Prevalence of Cryptosporidiosis Among Selected Group of Su...
Crimson Publishers-Prevalence of Cryptosporidiosis Among Selected Group of Su...Crimson Publishers-Prevalence of Cryptosporidiosis Among Selected Group of Su...
Crimson Publishers-Prevalence of Cryptosporidiosis Among Selected Group of Su...
 
Differential Detection of Entamoeba dispar and Entamoeba moshkovskii Using ne...
Differential Detection of Entamoeba dispar and Entamoeba moshkovskii Using ne...Differential Detection of Entamoeba dispar and Entamoeba moshkovskii Using ne...
Differential Detection of Entamoeba dispar and Entamoeba moshkovskii Using ne...
 
Ascaris lumbricoides and other Gastrointestinal Helminthic Parasites among Qe...
Ascaris lumbricoides and other Gastrointestinal Helminthic Parasites among Qe...Ascaris lumbricoides and other Gastrointestinal Helminthic Parasites among Qe...
Ascaris lumbricoides and other Gastrointestinal Helminthic Parasites among Qe...
 
Identification of ticks and detection of blood protozoa in friesian cattle by...
Identification of ticks and detection of blood protozoa in friesian cattle by...Identification of ticks and detection of blood protozoa in friesian cattle by...
Identification of ticks and detection of blood protozoa in friesian cattle by...
 
Isolation, identification and characterization of urinary tract infectious ba...
Isolation, identification and characterization of urinary tract infectious ba...Isolation, identification and characterization of urinary tract infectious ba...
Isolation, identification and characterization of urinary tract infectious ba...
 
Faecal Excretion of Salmonella Typhi During The Bacteraemic Phase of Typhoid ...
Faecal Excretion of Salmonella Typhi During The Bacteraemic Phase of Typhoid ...Faecal Excretion of Salmonella Typhi During The Bacteraemic Phase of Typhoid ...
Faecal Excretion of Salmonella Typhi During The Bacteraemic Phase of Typhoid ...
 
Serum Biochemical and Histopathological Changes in Rats Experimentally Infect...
Serum Biochemical and Histopathological Changes in Rats Experimentally Infect...Serum Biochemical and Histopathological Changes in Rats Experimentally Infect...
Serum Biochemical and Histopathological Changes in Rats Experimentally Infect...
 
38-54-1-SM
38-54-1-SM38-54-1-SM
38-54-1-SM
 
International Journal of Pharmaceutical Science Invention (IJPSI)
International Journal of Pharmaceutical Science Invention (IJPSI)International Journal of Pharmaceutical Science Invention (IJPSI)
International Journal of Pharmaceutical Science Invention (IJPSI)
 
The Sensitivity Of 99mTc-Ciprofloxacin (Infecton) Scintigraphy Imaging To Det...
The Sensitivity Of 99mTc-Ciprofloxacin (Infecton) Scintigraphy Imaging To Det...The Sensitivity Of 99mTc-Ciprofloxacin (Infecton) Scintigraphy Imaging To Det...
The Sensitivity Of 99mTc-Ciprofloxacin (Infecton) Scintigraphy Imaging To Det...
 
Materials​ ​and ​ ​methods Describe ​ ​the ​ ​staph ​ ​st
Materials​ ​and ​ ​methods  Describe ​ ​the ​ ​staph ​ ​stMaterials​ ​and ​ ​methods  Describe ​ ​the ​ ​staph ​ ​st
Materials​ ​and ​ ​methods Describe ​ ​the ​ ​staph ​ ​st
 
s12917-021-03064-9.pdf
s12917-021-03064-9.pdfs12917-021-03064-9.pdf
s12917-021-03064-9.pdf
 
Laboratory diagnosis of visceral leishmaniasis
Laboratory diagnosis of visceral leishmaniasisLaboratory diagnosis of visceral leishmaniasis
Laboratory diagnosis of visceral leishmaniasis
 
Species distribution and virulence factors of coagulase negative staphylococc...
Species distribution and virulence factors of coagulase negative staphylococc...Species distribution and virulence factors of coagulase negative staphylococc...
Species distribution and virulence factors of coagulase negative staphylococc...
 
Astrovirus.pptx
Astrovirus.pptxAstrovirus.pptx
Astrovirus.pptx
 

ResearchPaper

  • 1. 1 Bacteremia: An agr-Status Independent Infection By: Samantha Lau
  • 2. 2 Abstract: Staphylococcus aureus is the cause of many hospital-acquired infections. When it colonizes an individual, it is usually found on the skin, in the anterior nares or in the bloodstream. It was hypothesized that the isolates in the bloodstream are of the same mutant as those in the anterior nares. To test this hypothesis, cultures from both the blood and the anterior nares of patients infected with Staphylococcus aureus bacteremia, and cultures from only the anterior nares of patients that were not infected with Staphylococcus aureus were collected. The agr-status, mutations and repeats of the cultures collected were determined by cross-streaking colonies from diluted bacterial solutions, by extracting the DNA of the colonies, and by spa typing them to sequence the DNA. In comparing the agr-status of the cultures from the anterior nares and from the blood, it was found that the agr-status of the cultures were the same. Furthermore, it was found that mutations and repeats of the cultures from the anterior nares and from the blood were identical. Therefore, it was concluded that patients are colonized by Staphylococcus aureus strains of one mutant, and that the hypothesis that cultures in the bloodstream are derived from the isolates in the anterior nares was supported. It was also concluded that the agr-status of the strain does not affect the probability of developing a Staphylococcus aureus infection.
  • 3. 3 Introduction: The spread of bacterial infections, particularly that of Staphylococcus aureus infections, has been a longstanding issue. Staphylococcus aureus is associated with many respiratory infections. Between 1979 and 1995, it caused at least 13% of the hospital-acquired infections and about 10% to 40% of the infections resulting from nasal carriage of the bacteria (von Eiff, 2001). The infections caused by S. aureus range from infections as small as food poisoning, diarrhea and dehydration to infections as large as toxic shock syndrome, pneumonia and scalded skin syndrome (Lowy, 1998). Usually located on the skin and in the nose of 25% to 30% of healthy individuals, S. aureus only causes a problem when it passes the skin barrier and is given access within the body (Traber, 2008). To treat severe infections, antibiotics are given based on the S. aureus strain’s likelihood to be affected by antibiotics. However, certain strains cannot be treated by antibiotics, including Methicillin-resistant Staphylococcus aureus (MRSA) (Novick,2008). In order to prevent infections, such as these, the spread of S. aureus infections must be understood. This study expanded on the mechanisms behind this spread by examining the relationship between the blood and nasal S. aureus isolates. One mechanism of the spread is the quorum sensing system, which is the system that allows S. aureus to communicate with other cells, control its virulence and form biofilms. This system is encoded for by the agr locus, a two-component signaling unit that consists of a sensor and a response regulator. The agr locus is comprised of the four genes agrD, agrB, agrC and agrA. These four genes are able to control virulence by regulating the amount of toxins released. Their interaction to bring about the regulation of virul0ence involves agrD being processed through agrB and being secreted as an AIP (autoinducing peptide). The AIP then attaches to the receptor agrC, where a phosphate is attached to the AIP. Afterwards, the AIP is transferred to agrA, which activates transcription from the promoters P2 and P3. P2 allows the continuation of the cycle; P3 causes the development of toxins. Therefore, a strain is identified as agr-defective, or agr-negative, when agr expression through this interaction between the genes is no longer carried through, and identified as agr-positive when agr expression is carried through. In addition to the quorum sensing system, another mechanism of the spread is the continued production of AIPs, or autoactivating peptides, by agr-defective strains. This
  • 4. 4 mechanism was determined through a study that hypothesized that agr-defective S. aureus can be transmitted and that they are mostly acquired at hospitals (Shopsin, 2008). As a result of testing this hypothesis, it was determined that hemolytic and nonhemolytic strains only differ in one locus and are therefore identified as congenic (Shopsin, 2008). It was theorized that this most likely results from the fact that agr-defective strains derive from agr-positive stains. Furthermore, it was observed that agr-positive strains generate a greater amount of exoproteins in comparison to agr-defective strains (Shopsin, 2008). However, it was concluded that even though agr- defective strains do not produce many exoproteins, they continue to produce AIPs. It was also established that agr-defective strains are associated with hospitals, since all of the subjects that had agr-defective strains had either indirectly or directly been associated with the hospital. Two of the subjects were hospitalized, one had a sibling who was hospitalized, four were born at the hospital and three were postpartum mothers (Shopsin,2008). In addition to this, it was concluded that agr-defective strains can be transmitted as a result of seven cases in which a subject with agr-defective strains had family members with S. aureus strains (Shopsin,2008). Therefore, the hypothesis that agr-defective S. aureus was associated with hospitals and that agr-defective S. aureus could be transmitted were supported. This study is significant, since agr-defective strains are not usually present in healthy individuals. Hence, by knowing if agr-defective strains can be transmitted, among whom they normally transmit and where they usually begin to colonize, strategies can be developed to prevent them from colonizing, and in turn prevent S. aureus infections from arising. Mechanisms of the spread of S. aureus also include the transfer of S. aureus in the nose to the bloodstream. To examine the relationship between S. aureus in the bloodstream and in the nose, researchers involved in this study genotyped nasal and blood cultures with the use of pulsed-field gel electrophoresis (PFGE ) (von Eiff, 2001). The sequences of the cultures were then compared to determine if a relationship existed. It was concluded that the cultures from the bloodstream and from the nose were identical, since 82.2% of the cultures from the bloodstream were clones of the cultures from the anterior nares (von Eiff, 2001). To expand on this mechanism of the spread of S. aureus infections, this experiment examined the relationship between the agr-status and mutations of the cultures in the blood and of the cultures in the anterior nares. The hypothesis of this experiment was that the S. aureus
  • 5. 5 cultures in the blood originate from the cultures in the anterior nares. This hypothesis was approached by examining the agr-status of the cultures, examining the mutations of the cultures and determining the repeats of the cultures. An unexpected finding that came from this examination of the agr-status of the cultures was that the agr-status of the colonies does not influence whether or not those colonies will only colonize or will infect the body. Materials and Methods: Cell Cultures The cell cultures used for the experiment were provided by Dr. Karsten Becker from Universitätsklinikum Münster Institut für Medizinische Mikrobiologie. They were collected during two different studies. In the first study, the isolates were obtained between November 1993 and September 1994 from the health care centers of thirty-two hospitals. These isolates were collected from both the blood and the anterior nares of patients infected with S. aureus bacteremia. The patients involved in this study had completed case-record forms that relayed information about their date of birth, identification number and location in the hospital. In the second study, the isolates were obtained between June 1994 and June 1999 from the anterior nares of colonized patients. If the patients developed bacteremia during the course of the five- year study, isolates from their blood were also collected. The types of cell cultures used for the experiment included cultures from the blood and from the anterior nares of infected patients, and cultures from the anterior nares of colonized patients. The cultures from the anterior nares of colonized patients acted as controls. These cultures were placed in CYGP medium, snap frozen with the use of dry ice and stored at -80 degrees Celsius. This was done because the cultures needed to be placed in a setting where they were inactive to maintain their initial states. In preparing these cultures, the frozen samples of the isolates were thawed, plated on GL plates and maintained at 37 degrees Celsius in an incubator. The frozen samples were plated on GL plates, since the strains needed to be “waken up” to proceed with genotyping them. Dilution of the Blood and Nasal Cell Cultures Bacterial dilution is the process of making a sample of colonies less concentrated. For the dilution, 1 glass culture tube with 2 mL of the medium TSB, 1 eppendorf with 990 μL of TSB, 1 eppendorf with 190 μL of TSB and 1 eppendorf with 133 μL of TSB were prepared (Dilutions). The glass culture tube was then inoculated with a sample of isolates to a 0.5
  • 6. 6 McFarland Standard. Afterwards, 10 μL from the glass culture tube was placed in the eppendorf containing 990 μL of TSB, and 10 μL of the resulting mixture was placed in the eppendorf containing 190 μL of TSB. Next, 7 μL of the resulting mixture was placed in the eppendorf containing 133 μL of TSB. As each of these dilutions were completed, the mixtures were thoroughly vortexed with the use of the Vortex Genie 2. 20 μL from the resulting solution was then spread on warmed sheep blood plates to determine if the cultures were hemolytic, nonhemolytic or mixed. If this process was not completed, there would have been too many cultures. Having too many cultures would result in the overlapping of the cultures, which was not ideal for the picking of individual cultures during the cross-streaking of the colonies. Cross-streaking of the S. aureus Colonies During the process of cross-streaking, a colony was chosen based on its hemolysis from the 100 colonies produced by the 0.5 McFarland dilution. The plastic end of a sterile cotton swab was then used to streak the strain RN4220, which produced a lot of beta-hemolysins, down the center of a warmed sheep blood plate. Afterwards, the chosen colony was touched with the plastic end of a sterile cotton swab, and streaked perpendicular to the strain RN4220. The sheep blood plate was then maintained at 37 degrees Celsius in an incubator. By plating the culture against a strain that produced a lot of beta-hemolysins, it could be determined whether or not the culture released delta-hemolysins. DNA Extraction of the S. aureus Colonies To extract chromosomal DNA by mechanical lysis, the culture was first prepared by inoculating broth with the culture. In inoculating the broth, a Bunsen burner was used to sterilize a loop. The sterilized loop was then used to pick a single colony. The chosen single colony was then placed in 2 mL of broth using a gentle twisting motion. The resulting broth was placed in a shaking incubator at 37 degrees Celsius. After the culture was prepared, 2 mL of it was spun down at 13.2 k for 10 minutes in an Eppendorf 5415 centrifuge. Next, the supernatant was disposed of and the pellet was resuspended in 300 μL of Tissue Cell Lysis Solution. The resulting mixture was then placed in a bead beater tube filled with 1 mm of beads and beated at 6k for 20 seconds in a Savant FastPrep bead beater machine. To pellet the beads, the tubes were then spun at 13.2 k for 10 minutes. Once the beads were pelleted, the supernatant was aspirated using of a pipette and placed in a 1.5
  • 7. 7 mL eppendorf with 150 μL of MPC Protein Solution. The tube was then overturned several times and spun at 13.2 k for 10 minutes in the centrifuge. Following this, the supernatant was aspirated and placed in a 1.5 mL eppendorf containing 500 μL of ice cold isopropyl. The eppendorf was then overturned several times and spun at 13.2 k for 10 minutes in the centrifuge to pellet the DNA. To thoroughly wash the DNA, the supernatant was disposed of, and the eppendorf was filled with 500 μL of 75% ethanol and spun at 13.2 k for 5 minutes. This step was repeated twice. Then, the ethanol was poured off, and the eppendorf was left to dry for 3 to 4 hours. After the eppendorf had completely dried, the pellet was resuspended in 50 μL of distilled water. This process for DNA extraction is designed to allow for breaking cells open, removing lipids, proteins and RNA, and precipitating the DNA (DNA Extraction). PCR of the Extracted DNA To prepare for PCR, 2 μL of DNA was placed in a 25 μL master mix of nucleotides, magnesium and tac polymerase, 19 μL of water, 2 μL of the forward primer and 2 μL of the reverse primer. The forward and reverse primers used were made by vortexing a mixture of either 10 μL of agrF or agrR aliquots and 240 μL of sterile distilled water. Once the mixture of was created, it was placed in the Vapo.protect Eppendorf PCR machine. Gel electrophoresis of the Blood and Nasal Colonies Gel electrophoresis sorted the DNA by size and charge. To complete gel electrophoresis, the gel was first made by heating a mixture of 50 mL of TBE and .5 g of agarose until it appeared clear. When the temperature of the gel fell to 60 degrees Celsius, Ethidium bromide was added to detect the DNA after gel electrophoresis was completed. After the Ethidium bromide was thoroughly mixed into the gel, the gel was poured into a casting tray with stoppers. Wells were then in the gel with a comb. Once the gel solidified, an adequate amount of buffer was added. 5 μL of the ladder, of each of the DNA and of the dye mixtures were then loaded into the wells. The gel electrophoresis was then turned on. The process confirmed if the DNA amplified through PCR was the strand intended to be amplified by the number of base pairs that appeared. spa Typing of the S. aureus DNA spa typing is the discrimination of the S. aureus for the sequencing of the DNA (Koreen, 2011). It involved finding and labeling the tandem repeats, the parts of the sequence that repeat
  • 8. 8 themselves consecutively (Strommenger, 2006). Once all the tandem repeats were labeled, the labels were placed in the order that the tandem repeats appeared. Instead of spa typing, an alternate method that could be used in this experiment was PFGE, or pulsed-field gel electrophoresis. PFGE broke up the large DNA molecules with the use of an electric field (Joppa, 1992). MLEE, or multi-locus enzyme electrophoresis, could also be used in place of spa typing. MLEE involved distinguishing the bacteria using cellular enzymes (Chang Bioscience). However, spa typing was used instead of these methods because it sequenced the DNA better and, therefore, discriminated it more effectively. Statistical Analysis After the data had been gathered, the results obtained for the strains from the blood were placed next to the corresponding strains from the anterior nares to see if any correlation existed. The characteristics of the strains that were primarily compared included their agr-status, their gene sequence repeats and their mutations. Results: Bacteremia derives from the Staphylococcus aureus in the anterior nares. Results showed that the agr-status of the isolates in the nose is the same as the agr-status of the corresponding isolates in the blood, as shown by Figure 1a. This is supported by the fact that the agr-status of both the nasal colonies and blood colonies in Patient #3 is positive. This was established by plating the diluted samples of the cultures on sheep blood plates and by using the method of cross-streaking, as illustrated by Figure 1b and 1c. Since the results showed that thee agr-status of the nasal isolates and the corresponding blood isolates were the same, it was concluded that bacteremia derives from S. aureus cultures in the nose.
  • 9. 9 Patient # Nasal # Nasal cross- streak Blood # Blood cross- streak 3 11 + 3 + 4 13 - 4 - 13 39 - 13 - 26 75 - 26 - 27 78 + 27 + 28 82 + 28 + 30 89 + 30 + 32 96 + 32 + 37 116 + 37 + 40 123 + 40 + 41 125 + 41 + 42 127 + 42 + 43 130 + 43 + 44 132 + 44 + 45 135 + 45 + 47 140 + 47 + 49 144 + 49 + 50 147 + 50 + 52 155 + 52 + 78 253 + 78 + 84 272 + 84 + 85 277 + 277 + 87 284 + 87 + 88 287 + 88 + 91 295 - 91 - 92 298 + 92 + 93 301 + 93 + 95 311 + 95 + 96 314 + 96 + Figure 1a. The agr-status of isolates in the blood was the same as the agr-status of the corresponding isolates in the anterior nares. The agr-status of the isolates in the blood and in the anterior nares was determined by cross- streaking the strains, as described in the Materials and Methods section. By cross-streaking, it was determined that the agr-status of the isolates in the blood was the same as the agr-staus of the nasal isolates, which implied that bacteremia derives from the nasal colonies.
  • 10. 10 Figure 1b. Cross-streaking allowed for the determination of whether a strain was hemolytic or not. Cross-streaking showed whether or not a strain produced delta-hemolysins based on whether or not there was a clearing. It also showed the strength of the strain’s hemolytic activity based on the intensity of the clearing. Figure 1c. The agr-status of the blood isolates and of the nasal isolates was compared with the use of cross-streaking. Cross-streaking visually showed the correlation between the agr-status of cultures from the blood and cultures from the anterior nares.
  • 11. 11 As well as showing that the agr-status of the blood isolates and the nasal isolates was the same, the results supported the conclusion that the S. aureus isolates in the blood derived from the S. aureus isolates in the anterior nares by demonstrating that the mutations that occurred in the blood colonies were the same as the mutations that occurred in the corresponding nasal colonies, as shown by Figure 2a. This was determined with the use of spa typing, a procedure described in the Materials and Methods section. The three types of mutations that were found included single-nucleotide polymorphism (SNP), insertion sequence (IS), base pair insertion (+) and base pair deletion (-), as shown by Figure 2b. Single-nucleotide polymorphism occurred when a nucleotide in a genome differed within the paired chromosomes (SNP Fact Sheet). A DNA sequence was identified as an insertion sequence if it was short and could move in the genome (Schoenmakers, 2010). Base pair insertion occurred when nucleotide base pairs were added in a DNA sequence, and base pair deletions occurred when nucleotide base pairs were removed from a DNA sequence (Leong, 1985). These mutations are significant because they influenced gene expression. Patient # Nasal # Nasal Mutation Blood # Blood Mutation 4 13 118-IS256 4 118-IS256 13 39 t551a 13 t551a 26 75 a409 (-1 bp) 26 a409 (-1 bp) 78 253 c771t, c583t 78 c771t, c583t 91 295 t313 (+1 bp) 91 t313 (+1 bp) 143 466 c461a 143 c461a 147 484 a86c 147 a86c 171 564 t352 (+1 bp) 171 t352 (+1 bp) 180 595 g571a 180 g571a Figure 2a. The mutations that occurred in the isolates in the blood were the same as the mutations that occurred in the nasal isolates. The mutations that occurred in both the blood and the nasal isolates were found with the use of spa typing, as described in the Materials and Methods section. As a result of spa typing, it was determined that the mutations in the isolates in the blood and in the corresponding nasal isolates were the same.
  • 12. 12 Figure 2b. Three types of mutations were identified in several of the isolates. The three types of mutations that were found in the isolates were base pair insertion, base pair deletion, single-nucleotide polymorphism and insertion sequence. In addition to showing that the mutations in the blood and nasal isolates were the same, the results supported the fact that bacteremia derived from nasal isolates by showing that the genetic sequences of the cultures from the blood and the corresponding cultures from the anterior nares were the same, as shown by Figure 3. Colonies IS Element SNP BP Insertion/ Deletion Blood 2 4 2 Nasal 1 3 4
  • 13. 13 Patient # Nasal # Nasal Repeats Blood # Blood Repeats 1 4 UJGGBBGGJAGJ 1 UJGGBBGGJAGJ 2 8 YGFMBQBLQBLPO 2 YGFMBQBLQBLPO 3 11 WGKAKAOMQQ 3 WGKAKAOMQQ 4 13 YHFGFMBQBLO 4 YHFGFMBQBLO 5 18 UJGBBGGJAGJ 5 UJGBBGGJAGJ 6 21 ZDGMDMGMM 6 ZDGMDMGMM 7 23 UJGBBGGJAGJ 7 UJGBBGGJAGJ 9 28 ZDGMDMGMM 9 ZDGMDMGMM 10 30 XKAKB 10 XKAKB 11 35 UBGGJAGJ 11 UBGGJAGJ 12 37 ZFGU2DMGGM 12 ZFGU2DMGGM 13 39 UJGBBGGJAGJ 13 UJGBBGGJAGJ 14 42 XKAKBEMBKB 14 XKAKBEMBKB 15 44 YGFMBQBLPO 15 YGFMBQBLPO 16 47 XKAKBEMBKB 16 XKAKBEMBKB 17 49 ZDGMDMGMM 17 ZDGMDMGMM 18 51 UJFMEBKBPE 18 UJFMEBKBPE 19 54 WGKAKAOM 19 WGKAKAOM 20 57 YHGFMBQBLO 20 YHGFMBQBLO 21 59 YHGFMBQBLO 21 YHGFMBQBLO 22 61 WGKAKAOMQ 22 WGKAKAOMQ 26 75 ZDGMDMGMMM 26 ZDGMDMGMMM 27 78 I2Z2DZ2EGMMJH2M 27 I2Z2DZ2EGMMJH2M 28 82 YGFMBQBLO 28 YGFMBQBLO 30 89 ZFGU2 30 ZFGU2 32 96 UJFMEBKBPE 32 UJFMEBKBPE 37 116 I2Z2EGMMJH2M 37 I2Z2EGMMJH2M 40 123 WGKAKAOMQQQ 40 WGKAKAOMQQQ 41 125 ZDGMDMGMM 41 ZDGMDMGMM 42 127 YHFGFMBQBLO 42 YHFGFMBQBLO 43 130 UJGBBGGJAGJ 43 UJGBBGGJAGJ Figure 3. The genetic sequences of the isolates from the blood and from the anterior nares were the same. The genetic sequences of both the nasal and blood cultures were determined with the use of spa typing. Since the genetic sequences of the nasal isolates and of their corresponding blood isolates were the same, it was concluded that the blood cultures derive from the nasal cultures. agr-status of Staphylococcus aureus isolates in patients does not affect the probability of becoming infected with Staph. Results showed that the agr- status of S. aureus colonies in patients is not a determining factor of whether or not the patients become infected with Staph. The results indicated this, since
  • 14. 14 the percentage of agr-defectives in the nasal and blood isolates from infected patients was the same as the percentage of agr-defectives in the nasal isolates from non-infected patients. This implied that agr-defectives can as easily colonize infected patients as they can colonize non- infected patients. Infecting Non-Infecting agr-status Nasal (188) Blood (231) Nasal (209) agr (+) 175 210 187 agr (-) 13 21 22 %agr (-) 6.91 9.09 10.53 Figure 4. The agr-status of S. aureus isolates did not influence whether or not a patient was infected with Staph. The percentage of agr-defectives in the nasal and blood isolates of infected patients was similar to the percentage of agr-defectives in the nasal isolates of non-infected patients. Discussion: The goal of this experiment was to determine if the isolates from the blood derive from the nasal isolates. The results showed that the hypothesis that colonies from the blood derive from nasal isolates was supported. This is due to the fact that the agr-status of the isolates in the blood and of the isolates in the anterior nares was the same. The mutations and repeats of the isolates from both areas of colonization were the same as well. In addition to this, the results showed that the agr-status of S. aureus strains does not influence whether or not it will infect a patient. These results reinforced the results of the study completed by von Eiff in 2001, which also concluded that the isolates from the blood and the nose were related by implementing similar techniques to those used in this study. These results are significant due to the fact that a large number of people carry Staphylococcus aureus on a regular basis. About 25% to 30% of people carry Staphylococcus aureus isolates, and a large number of them carry strains that often modify themselves. Although these isolates are more dangerous to breastfeeding women, people with diabetes, people with cancer, and children, they are commonly present in everyone. Therefore, many are susceptible to Staphylococcus aureus infections, since it was found that they derive from the colonies in the anterior nares. As a result of this, the nasal colonies must be eliminated to reduce the number of infections caused by Staphylococcus aureus and, in turn, stop the cycle of transfer.
  • 15. 15 To eliminate the nasal colonies, they must be treated with an ointment. The nasal ointment that is currently the most commonly used is mupirocin, a topical antibiotic that is not useful in acting against viral or fungal infections. It reduces the number of infections caused by Staphylococcus aureus by prohibiting protein synthesis. As documented by Wertheim, mupirocin allows for the elimination of 91% of the nasal colonies (Wertheim, 2004). In addition to mupirocin, bacitracin and rifampin may be used to eliminate the nasal colonies. However, they are not as effective, since rifampin only eliminates 79% of the nasal colonies, while bacitracin only eliminates 44% of the nasal colonies. To expand on this study, mupirocin should be further examined. This is because although mupirocin supports a reduction in the prevalence of bacteremia, it is not highly effective. As shown by Rahman’s study, several strains of Staphylococcus aureus have developed that are highly resistant to mupirocin (Rahman, 1988). Mupirocin is also not highly effective because it does not prevent the colonization of extranasal locations and usually results in colonization with exogenous strains. Therefore, a study can be conducted to develop a more efficient way of eliminating the isolates in the anterior nares. This more efficient way of eliminating the isolates in the anterior nares will most likely involve disrupting the quorum sensing system because the quorum sensing system allows S. aureus to communicate with other cells, control its virulence and form biofilms, which are groups of microorganisms found on solid substrates (Teng,2011). Biofilms are created when free-floating microorganisms attach to a surface and begin dividing or incorporating other microorganisms (Yarwood, 2004). Being a part of these structures are beneficial for bacteria, since they provide security by heightening the resistance to detergents and antibiotics (Yarwood,2004). This quorum sensing system regulates these functions of S. aureus with the accessory gene regulator (agr) locus. The agr locus reduces the expression of surface proteins and increases the expression of exotoxins (Shopsin,2008). Therefore, it supports S. aureus’s expression of virulence and adds to the severity of infections, such as murine subcutaneous abscesses, which are abscesses situated beneath the skin. The agr locus assists S. aureus’s expression of virulence and heightens the severity of infections by encoding for the secretion of AIPs, or autoactivating peptides (Muir, 2009). AIPs are types of autoactivators, which are molecules that induce their own synthesis
  • 16. 16 (Geisinger,2008). Their density is correlated with the local population. This means that as the local population increases, the density of AIPs increases, which is significant due to the fact that once the density of the AIPs reaches a certain amount, the entire population coordinates and acts as one (Muir, 1216). An example of bacteria’s use of AIPs to coordinate is bioluminescence, since bioluminescent bacteria only glow when their density is high enough (Geisinger, 2008). Variations in AIPs arise from variations in their ogliopeptide sequences (Ji,2011). These AIPs are administered by agrD. agrD is only one of the four genes in the operon of the agr locus, which also consists of agrB, agrC and agrA.. Variations in the agr locus derive from differences in the AIPs, agrB and agrC. The different agr loci are categorized into four agr specificity groups (Jarraud, 2000). These variations in the agr locus originate from heterologous interactions between the AIP and agrC. This is because the heterologous interactions between the AIP and agrC lead to the interference, which, in turn, results in a change in the accessory gene expression (Muir,2009). Therefore, the isolates in the anterior nares can be disrupted by obstructing agrC and agrB. In addition to this research based on determining a more efficient way of eliminating isolates in the anterior nares, research can be done to determine if bacteremia also derives from S. aureus colonies on other sites of the body besides the anterior nares, such as other mucous membranes and the skin. This would allow for the full examination of the derivative of infections caused by Staphylococcus aureus. Acknowledgements: I would like to thank all the people that helped make the completion of this project possible. I would first like to thank Mr. Richard Lee for encouraging me to participate in the research program, for helping me find a lab suitable to my interests, and for supporting me in the writing of this paper. I would also like to thank those that helped me in the Skirball Institute at New York University. I would particularly like to thank Dr. Richard Novick for providing me with the opportunity to work at the lab and Dr. Bo Shopsin and Mr. Gregory Wasserman for guiding me in completing this project and making the experience at lab pleasant. Without the support of Dr. Bo Shopsin and Mr. Gregory Wasserman, this project would not have been achievable.
  • 17. 17 Bibliography: Bennett, Nicholas J. “Bacteremia.” Medscape. Web. <http://emedicine.medscape.com/article/961169-overview>. “Multi-Locus Enzyme Electrophoresis (MLEE).” Chang Bioscience. <http://www.changbioscience.com/primo/pcr/eMultisLocussEnzymesE.htm>. Chen, John, Novick, Richard P. “Phage-Mediated Intergeneric Transfer of Toxin Genes.” Science. 323. 139. Print. “Dilutions.” Wellesley College. < http://www.wellesley.edu/Biology/Concepts/index.html>. “DNA Extraction.” Carleton College. <http://serc.carleton.edu/microbelife/research_methods/genomics/dnaext.html>. Ena J, Boelaert JR, Boyken LD, Van Landuyt HW, Godard CA, Herwaldt LA. Epidemiology of Staphylococcus aureus infections in patients on hemodialysis. Infect Control Hosp Epidemiol 1994;15:78-81. Geisinger, Edward, Muir, Tom W., Novick, Richard P. "agr receptor mutants reveal distinct modes of inhibition by staphylococcal autoinducing peptides." PNAS. 106.4 (2009): 1216-1221. Print. Geisinger, Edward, & Novick, Richard P. “Quorum Sensing in Staphylococci.” The Annual Review of Genetics 42 (2008): 541-564. Jarraud, S., Lyon, G.J., Figueiredo, A.M.S., Vandenesch, F. “Exfoliatin-Producing Strains Define a Fourth agr Specificity Group in Staphylococcus aureus.” Journal of Bacteriology. 182:22 (2000). Print. Ji, Guangyong, Pei, Wuhong, Zhang, Linsheng, Qiu, Rongde, Lin, Jianqun, Yvonne, Benito, Lina, Gerard, & Novick, Richard P. “Staphylococcus intermedius Produces a Functional agr Autoinducing Peptide Containing a Cyclic Lactone.” American Society for Microbiology 187.9 (2005): 3139-3150. Web. 2 Feb 2011. < http://jb.asm.org/cgi/content/full/187/9/3139>. Joppa, Barbara. “Pulsed Field Electrophoresis for Separation of Large DNA.” Probe 2.3 (1992). <http://www.nalusda.gov/pgdic/Probe/v2n3/puls.html>. Kluytmans, JA, Mouton, JW, Ijzerman, EP, et al. “Nasal carriage of Staphylococcus aureus as a major risk factor for wound infections after cardiac surgery.” J Infect Dis(1995);171:216- 9. Koreen, Larry, Ramaswamy, Srinivas V., Graviss, Edward A., Naidich, Steven, Musser, James
  • 18. 18 M., Kreiswirth, Barry N. “spa Typing Method for Discriminating among Staph. aureus Isolates.” Journal of Clinical Microbiology 42.2(2004): 792-799. Web. 2 Feb 2011. <http://jcm.asm.org/cgi/content/full/42/2/792>. Leong, J.M.p; Nunes-Düby, S.E.; Landy, A. “Generation of single base-pair deletions, insertions, and substitutions by a site-specific recombination system.” PNAS 82.20 (1985): 6990- 6994. Web. Lowy, Franklin D. “Staphylococcus Aureus Infections.” The New England Journal of Medicine. Print. Mayville,Patricia, Ji, Guangyong, Beavis, Ronald, Yang, Hongmei, Goger, Micheal, Novick, Richard P. "Structure-activity analysis of synthetic autoinducing thiolactone peptides from Staphylococcus aureus responsible for virulence ." PNAS. 96.4 (1998): 1218-1223. Print. Mehta, Pankaj, Goyal, Sidhartha, Long, Tao, Bassler, Bonnie L., Wingreen, Ned S. “Information processing and signal integration in bacterial quorum sensing.” Molecular Systems Biology 5:325 (2009). Web. 2 Feb 2011. < http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2795473/>. Ng, Wai-Leung, Wei, Yunzhou, Perez, Lark J., Cong, Jianping, Long, Tao, Koch, Matthew, Semmelhack, Martin F., Wingreen, Ned S., & Bassler, Bonnie L. “Probing bacterial transmembrance histidine kinase receptor-ligand interactions with natural and synthetic molecules.” PNAS 107.12 (2010): 5575-5580. Web. 2 Feb 2011. < http://pubget.com/search?q=authors%3A%22Jianping%20Cong%22>. Novick, Richard P., Christie, Gail E., Penades, Jose R. “The Phage-related Chromosomal Islands of Gram-positive Bacteria,” Nature Reviews: Microbiology, 8. Print. Novick, Richard P., Maiques, Elisa, Ubeda, Carles. “Beta-Lactam Antibiotics Induce the SOS Response and Horizontal Transfer of Virulence Factors in Staphylococcus aureus.” Journal of Bacteriology. 188.7 (2006). Print. Novick, Richard P. Medicine. Combating impervious bugs [comment]. Science. 2008 Feb 15;319(5865):910-1. Novick, Richard P. MRSA: RIP? Scientist. 2008 FEB;22(2):14-15. “PCR.” NCBI. < http://www.ncbi.nlm.nih.gov/projects/genome/probe/doc/TechPCR.shtml>. “PCR Virtual Lab.” The University of Utah. < http://learn.genetics.utah.edu/content/labs/pcr/>.
  • 19. 19 Peters, Timothy R., Hammon, Dudley E., Jarrah, Rima J., Palavecino, Elizabeth L. “Staphylococcal Toxic Shock Syndrome Complicating Influenza A Infection in a Young Child.” ISRN Pulmonology (2011). “Polymerase Chain Reaction.” DNA Learning Center. <http://www.dnalc.org/resources/animations/pcr.html>. Rahman, Mary, Noble, W.C., Cookson, B. “Transmissible mupirocin resistance in Staphylococcus aureus.” Epidem. Inf. (1989). Roberts, Richard B. , de Lencastre , Alexandre, Eisner, William, Shopsin, Bo. “Molecular Epidemiology of Methicillin-Resistant Staphylococcus aureus in 12 New York Hospitals.” the MRSA Collaborative Study Group. The Journal of Infectious Diseases. 2 Feb 2011. Schoenmakers, Erik; Agostini, Maura; Mitchell, Catherine; Schoenmakers, Nadia; Papp, Laura; Rajanayagam, Odelia; Padidela, Raja; Ceron-Gutierrez, Lourdes; Doffinger, Rainer; Prevosto, Claudia; Luan, Jian’an; Montano, Sergio. “Mutations in the selenocysteine insertion sequence–binding protein 2 gene lead to a multisystem selenoprotein deficiency disorder in humans.” J Clin Invest 120.12 (2010): 4220-4235. Serafini, F; Bottacini, F; Viappiani, A; Baruffini, E; Turroni, F; Foroni, E; Lodi, T; van Sinderen, D; Ventura, M. “Investigation of mupirocin susceptibility in bifidobacteria: physiological and genetic insights.” Appl Environ Microbiol (2011). Web. Shopsin, Bo; Drlica-Wagner, Alex; Mathema, Barun; Adhikari, Rajan P; Kreiswirth, Barry N; Novick, Richard P. “Prevalence of agr dysfunction among colonizing Staphylococcus aureus strains.” 2008 Oct 15;198(8):1171-4, Journal of infectious diseases. Shopsin, Bo; Eaton, Christian; Wasserman, Gregory A; Mathema, Barun; Adhikari, Rajan P; Agolory, Simon; Altman, Deena R; Holzman, Robert S; Kreiswirth, Barry N; Novick, Richard P., “Mutations in agr do not persist in natural populations of methicillin-resistant Staphylococcus aureus.” Journal of infectious diseases. 2010 Nov 15;202(10):1593-9. “SNP Fact Sheet.” Human Genome Project Information. <http://www.ornl.gov/sci/techresources/Human_Genome/faq/snps.shtml>. Steinberg JP, Clark CC, Hackman BO. “Nosocomial and community acquired Staphylococcus aureus bacteremias from 1980 to 1993: impact of intravascular devices and methicillin resistance.” Clin Infect Dis (1996):23:255-9. Strommenger, B.; Kettlitz, C.; Weniger, T.; Harmsen, D.; Friedrich, A. W.; Witte, W. “Assignment of Staphylococcus Isolates to Groups by spa Typing, SmaI Macrorestriction Analysis, and Multilocus Sequence Typing.” J Clin Microbiol 44.7(2006): 2533-2540.
  • 20. 20 Traber, Katrina E; Lee, Elsie; Benson, Sarah; Corrigan, Rebecca; Cantera, Mariela; Shopsin, Bo; Novick, Richard P. “agr function in clinical Staphylococcus aureus isolates.” Microbiology. 2008 Aug;154(Pt 8):2265-74. Teng, Shu-Wen. “Signal Integration in Cell-to-Cell Communication.” (2010): 1-119. Web. 2 Feb 2011. < http://www.princeton.edu/physics/academics/graduate- program/theses/theses-from-2010/S.Tengthesis.pdf>. Ubeda, Carles; Olivarez, Nicholas P; Barry, Peter; Wang, Huaibin; Kong, Xiangpeng; Matthews, Avery; Tallent, Sandra M; Christie, Gail E; Novick, Richard P., “Specificity of staphylococcal phage and SaPI DNA packaging as revealed by integrase and terminase mutations.” Molecular microbiology. 2009 Apr;72(1):98-108. Van Belkum, Alex. “40 years of methicillin resistant Staphylococcus aureus MRSA is here to stay—but it can be controlled.” BMJ 323.7314(2001): 644-645. Web. von Eiff, C. (2001). Nasal carriage as a source of staphylococcus aureus bacteremia. NEJM, 344(1), 11-16. Wertheim, Heiman F.L., Verveer, Jeroen, Boelens, Helene A.M., van Belkum, Alex, Verbrugh, Henri A., Vos, Margreet C. “Effect of Mupirocin Treatment on Nasal, Pharyngeal and Perineal Carriage of Staphylococcus aureus in Healthy Adults.” Antimicrob Agents Chemother (2005). Yamada, Mizuho. “Ultrastructure of Pustules in Impetigo Herpeformis.” Journal of Cutaneous Pathology 3.1: 35-40. Yarwood, Jeremy M., Bartels, Douglas J., Volper, Esther M., Greenbery, E. Peter. “Quorum Sensing in Staph. aureus Biofilms.” Journal of Bacteriology 186.6 (2004). < http://jb.asm.org/cgi/content/full/186/6/1838>.