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Ranking Species
in
Mutualistic Networks
Virginia Domínguez García and Miguel Á. Muñoz
Lake Como Quantitative Laws II – June 2016
Statistical Physics and
Complex Systems Group
Ranking Species in Mutualistic Networks – Mutualistic Interactions
Mutualistic interactions
Mutual beneficial interplay:
Bee obtains nutrients in exchange for its pollination
service
Mutualistic interactions
Ranking Species in Mutualistic Networks – Mutualistic Interactions
90 % tropical trees
Needs mutualism
70 % of crops
needs bees
Ubiquitous
90% of tropical trees are involved
Mutualistic interactions
Ubiquitous
90% of tropical trees are involved
Interactions can involve hundreds of
species
Tight coevolution: one to one
specialization
Mutualistic bipartite Networks
Ranking Species in Mutualistic Networks – Mutualistic Interactions
Mutualistic interactions
Bipartite: 2 Different set of nodes PlantsAnimals
Mutualistic bipartite networks
Ranking Species in Mutualistic Networks – Mutualistic Networks
Mutualistic interactions
Bipartite: 2 Different set of nodes PlantsAnimals
Interactions
Ranking Species in Mutualistic Networks – Mutualistic Networks
Ranking Species in Mutualistic Networks – Mutualistic Networks
specialistgeneralist
specialist
Specialist
(few partners)
Specialist
Specialist Generalist
(many partners)
specialistgeneralist
Ranking Species in Mutualistic Networks – Mutualistic Networks
specialist
Specialist
(few partners)
Specialist
Specialist Generalist
(many partners)
specialistgeneralist
Ranking Species in Mutualistic Networks – Mutualistic Networks
specialist
Measures number of shared
neighbours
=
Mutualistic Networks – External perturbation
The International Union for Conservation of
Nature has evaluated 52,205 species, depicted
here, for their ability to survive
Mutualistic Networks – External perturbation
How to identify the most important
species in the network?
If we identify important species the network will collapse fast
Ranking Species in Mutualistic Networks - Framework
FRAMEWORK: DECONSTRUCTING ECOSYSTEMS
We do not know how these networks are assembled Other strategy
Tear them down
Search for the most efficient way to destruction
PageRank
A node is
important if
linked to
important
nodes
Closeness
Less distance to
others
Ranking Species in Mutualistic Networks - Framework
FRAMEWORK: DECONSTRUCTING ECOSYSTEMS
WHICH
RANKING
? Degree
More
connections
Betweenness
Bottlenecks
Nestedness
Contribution to
nestedness
Eigenvector
Overlap with
leading
eigenvalue of
A
Ranking Species in Mutualistic Networks - Framework
FRAMEWORK: MusRank Ranking algorithm for mutualistic networks
Inspired in a recent work in
econometrics Products
Ranking Species in Mutualistic Networks - Framework
FRAMEWORK: MusRank Ranking algorithm for mutualistic networks
Inspired in a recent work in
econometrics
Active species
Passive species
Importance
Vulnerability
Determined by number and vulnerability of
partners
(Linear)
Bounded by the less important partner
(Non-linear)
Ranking Species in Mutualistic Networks
FRAMEWORK: MusRank
Adjacency
matrix
( )
( )
( )
( )
Active
Passive
-
Importance
Vulnerability
+
- +
( )
( )
( )
( )
Ranking Species in Mutualistic Networks
FRAMEWORK: MusRank
FIX
PONT
Ranking of
Importance of Active
species
Ranking of
Vulnerability of
Passive species
Independent of initial
conditions
Active
Passive
-
Importance
Vulnerability
+
- +
( )
( )
( )
( )
Ranking Species in Mutualistic Networks
FRAMEWORK: MusRank
FIX
PONT
Ranking of
Importance of Active
species
Ranking of
Vulnerability of
Passive species
Independent of initial
conditions
Ranking Species in Mutualistic Networks
FRAMEWORK: Evaluating a ranking
Extinction
curve
Active Passive
Decreasingrank
Ranking Species in Mutualistic Networks
FRAMEWORK: Evaluating a ranking
Extinction
Area
Active Passive
0 1
1
destructive ranking
0 1
1
not destructive ranking
OK!
Decreasingrank
Active Passive
Ranking Species in Mutualistic Networks
RESULTS: MusRank PERFORMANCE
Genetic Algorithm
best
RESULT:
The ranking provided by
MusRank outperforms all
others
RESULT:
Reversing Active/Passive roles
do not change results
Robust algorithm
Distance from each ranking to the genetic algorithm
over all dataset (60 networks)
Ranking Species in Mutualistic Networks
Take home message
Mutualistic networks
-mutual benefit interplay
-hundred of species involved
-characteristic features: Degree heterogeneity (Generalists and specialists),
robust core, phylogeny groups, nestedness,…
-Mutualistic interactions are very important for biodiversity manteinance.
Rankig species
-protocol to quantify “lethality” of a ranking
-MusRank: best method to asses species importance in mutualistic networks
WE ARE
IMPORTANT !!
Oh, No!!I’m more important
than you are ! hehehe
Thanks for Your
attention !!

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Ranking Species in Mutualistic Networks - Virginia Domínguez García and Miguel Á. Muñoz

  • 1. Ranking Species in Mutualistic Networks Virginia Domínguez García and Miguel Á. Muñoz Lake Como Quantitative Laws II – June 2016 Statistical Physics and Complex Systems Group
  • 2. Ranking Species in Mutualistic Networks – Mutualistic Interactions Mutualistic interactions Mutual beneficial interplay: Bee obtains nutrients in exchange for its pollination service
  • 3. Mutualistic interactions Ranking Species in Mutualistic Networks – Mutualistic Interactions 90 % tropical trees Needs mutualism 70 % of crops needs bees Ubiquitous 90% of tropical trees are involved
  • 4. Mutualistic interactions Ubiquitous 90% of tropical trees are involved Interactions can involve hundreds of species Tight coevolution: one to one specialization Mutualistic bipartite Networks Ranking Species in Mutualistic Networks – Mutualistic Interactions
  • 5. Mutualistic interactions Bipartite: 2 Different set of nodes PlantsAnimals Mutualistic bipartite networks Ranking Species in Mutualistic Networks – Mutualistic Networks
  • 6. Mutualistic interactions Bipartite: 2 Different set of nodes PlantsAnimals Interactions Ranking Species in Mutualistic Networks – Mutualistic Networks
  • 7. Ranking Species in Mutualistic Networks – Mutualistic Networks specialistgeneralist specialist
  • 8. Specialist (few partners) Specialist Specialist Generalist (many partners) specialistgeneralist Ranking Species in Mutualistic Networks – Mutualistic Networks specialist
  • 9. Specialist (few partners) Specialist Specialist Generalist (many partners) specialistgeneralist Ranking Species in Mutualistic Networks – Mutualistic Networks specialist Measures number of shared neighbours =
  • 10. Mutualistic Networks – External perturbation The International Union for Conservation of Nature has evaluated 52,205 species, depicted here, for their ability to survive
  • 11. Mutualistic Networks – External perturbation How to identify the most important species in the network?
  • 12. If we identify important species the network will collapse fast Ranking Species in Mutualistic Networks - Framework FRAMEWORK: DECONSTRUCTING ECOSYSTEMS We do not know how these networks are assembled Other strategy Tear them down Search for the most efficient way to destruction
  • 13. PageRank A node is important if linked to important nodes Closeness Less distance to others Ranking Species in Mutualistic Networks - Framework FRAMEWORK: DECONSTRUCTING ECOSYSTEMS WHICH RANKING ? Degree More connections Betweenness Bottlenecks Nestedness Contribution to nestedness Eigenvector Overlap with leading eigenvalue of A
  • 14. Ranking Species in Mutualistic Networks - Framework FRAMEWORK: MusRank Ranking algorithm for mutualistic networks Inspired in a recent work in econometrics Products
  • 15. Ranking Species in Mutualistic Networks - Framework FRAMEWORK: MusRank Ranking algorithm for mutualistic networks Inspired in a recent work in econometrics Active species Passive species Importance Vulnerability Determined by number and vulnerability of partners (Linear) Bounded by the less important partner (Non-linear)
  • 16. Ranking Species in Mutualistic Networks FRAMEWORK: MusRank Adjacency matrix ( ) ( ) ( ) ( ) Active Passive - Importance Vulnerability + - +
  • 17. ( ) ( ) ( ) ( ) Ranking Species in Mutualistic Networks FRAMEWORK: MusRank FIX PONT Ranking of Importance of Active species Ranking of Vulnerability of Passive species Independent of initial conditions Active Passive - Importance Vulnerability + - +
  • 18. ( ) ( ) ( ) ( ) Ranking Species in Mutualistic Networks FRAMEWORK: MusRank FIX PONT Ranking of Importance of Active species Ranking of Vulnerability of Passive species Independent of initial conditions
  • 19. Ranking Species in Mutualistic Networks FRAMEWORK: Evaluating a ranking Extinction curve Active Passive Decreasingrank
  • 20. Ranking Species in Mutualistic Networks FRAMEWORK: Evaluating a ranking Extinction Area Active Passive 0 1 1 destructive ranking 0 1 1 not destructive ranking OK! Decreasingrank Active Passive
  • 21. Ranking Species in Mutualistic Networks RESULTS: MusRank PERFORMANCE Genetic Algorithm best RESULT: The ranking provided by MusRank outperforms all others RESULT: Reversing Active/Passive roles do not change results Robust algorithm Distance from each ranking to the genetic algorithm over all dataset (60 networks)
  • 22. Ranking Species in Mutualistic Networks Take home message Mutualistic networks -mutual benefit interplay -hundred of species involved -characteristic features: Degree heterogeneity (Generalists and specialists), robust core, phylogeny groups, nestedness,… -Mutualistic interactions are very important for biodiversity manteinance. Rankig species -protocol to quantify “lethality” of a ranking -MusRank: best method to asses species importance in mutualistic networks WE ARE IMPORTANT !! Oh, No!!I’m more important than you are ! hehehe Thanks for Your attention !!