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PUH 5302, Applied Biostatistics 1
Course Learning Outcomes for Unit III
Upon completion of this unit, students should be able to:
4. Recommend solutions to public health problems using
biostatistical methods.
4.1 Compute and interpret probability for biostatistical analysis.
4.2 Draw conclusions about public health problems based on
biostatistical methods.
5. Analyze public health information to interpret results of
biostatistical analysis.
5.1 Analyze literature related to biostatistical analysis in the
public health field.
5.2 Prepare an annotated bibliography that explores a topic
related to public health issues.
Course/Unit
Learning Outcomes
Learning Activity
4.1
Unit Lesson
Chapter 5
Unit III Problem Solving
4.2
Unit Lesson
Chapter 5
Unit III Problem Solving
5.1
Chapter 5
Unit III Annotated Bibliography
5.2
Chapter 5
Unit III Annotated Bibliography
Reading Assignment
Chapter 5: The Role of Probability
Unit Lesson
Welcome to Unit III. In previous units, we discussed some
fundamentals of biostatistics and their application
to solving public health problems. In Unit III, we will compute,
interpret, and apply probability, especially in
relation to different populations.
Computing and Interpreting Probabilities
Probability means using a number (or numbers) to demonstrate
how likely something is to occur. For
example, if a coin is tossed, the probability of getting a heads or
tail is one out of two chances; that is ½.
Researchers have used probability studies to predict weather
and other events and have been successful to
some extent. Public health professionals have used statistical
methods to predict the chances of health-
related events, thereby providing arguments in favor of taking
precautionary measures and warning the
general public on important health issues.
In biostatistics, we use both descriptive statistics and inferential
statistics to address public health issues
within a population. In most cases, researchers are not able to
study the entire population; they try to get a
sample from the population from which they can generalize
their findings.
Descriptive Statistics
Aside from the use of probability sampling methods, there are
other methods used for the computation and
interpretation of data; these are generally known as descriptive
statistics. With descriptive statistics, we
UNIT III STUDY GUIDE
Probability
PUH 5302, Applied Biostatistics 2
UNIT x STUDY GUIDE
Title
normally compute the mean, mode, median, variance, and
standard deviation. Information obtained using
such computation methods is used for descriptive purposes, as
opposed to information obtained from
inferential statistics.
Let’s examine this example using the numbers 5, 10, 2, 4, 6, 10,
2, 3, and 2.
The mean is the sum of all the numbers ÷ the number of cases
= 37 ÷ 9
= 4.11
The median is the middle number after the numbers have been
arranged in an ascending or descending
order
= 4
The mode is the most frequently occurring number
= 2
You can calculate the variance and standard deviation from the
definitions given here:
the squared differences of the mean.
eviation is the √variance (the square root of the
variance).
Population and Sample
A sample is just a smaller subgroup of a larger population.
Researchers can take a sample from the
population for a specific study. It is also possible to get
different samples from a population. The most
important thing here is that the sample characteristics must
reflect the population because the results of the
findings are generalized to the entire population. In this case,
the sampling method is very important.
There are different types of sampling methods, including:
independent chances of been selected;
number of sample;
ing: the population is divided into subgroups
and simple random sampling is used on
each group;
and random areas are selected to asses;
chosen
and then any method is used to sample
the desired sample size;
g
similar research characteristics are
used; and
theory (Changing Minds, n.d.).
Computing and interpreting probability for biostatistical
analysis in health-related issues such as disease
prevalence and incidence in a population is vital. The method of
data collected and the type of analytical
methods used are critical. Public health researchers may use two
sampling methods:
Probability sampling is the sampling method where every unit
in the population has a chance of being
selected in the sample (Sullivan, 2018). Probability sampling is
widely used in quantitative sampling, making it
possible for the selected sample to be unbiased. Unbiased
reports from public health researchers are
important for the veracity of the research studies. See the
example below:
PUH 5302, Applied Biostatistics 3
UNIT x STUDY GUIDE
Title
Assume that out of a population of 1500 persons, 1000 are male,
and 500 are females. From those samples,
500 males and 300 females were also exposed to HIV.
Representing the data in probability terms may help
significantly for comparison and reporting purposes. This
information could be reported thus:
= 500 / 1500 = 0.33
Non-probability sampling is any sampling method where some
of the population has no chance of selection
(Sullivan, 2018). It is widely used in qualitative sampling. The
use of nonprobability sampling makes it
possible for public health researchers to insert descriptive
comments regarding a sample, so they are cost
effective and less time consuming. The non-probability
sampling method makes it possible to still conduct
sampling where it is impractical for probability sampling to be
done. There are also some disadvantages
associated with this sampling method. There are possibilities of
lack of representation of some aspects of the
population. In addition, generalization of results may be of low
level and possible bias may be difficult to
identify. This has a big implication for public health researchers
who may want to report accurate results or
findings. At any rate, such reports have also helped in providing
vital information regarding disease and other
aliments in the country.
Proposing
Solution
s for Biostatistical Problems
In proposing solutions for biostatistical problems, public health
researchers, in addition to methods discussed
above, use sensitivity and specificity testing, especially for
investigations involving the presence of a diseases
(Sullivan, 2018). Let’s define these terms and examine some
applications.
Sensitivity and Specificity
Sensitivity and specificity tests are used in screening in order to
help identify individuals who have contracted
a specific disease for which the screening is done. Sensitivity is
the likelihood that a test will show the
presence of a disease, while specificity testing looks for the
likelihood that a disease is absent.
In order to understanding this concept, let’s examine the table
below.
Screening Disease No Disease Total
Positive A = 25 B = 50 A + B = 75
Negative C = 5 D = 120 C + D = 125
Total A + C = 30 B + D = 170 N = 200
Using the table above, disease presence is evaluated by
+ D)
x 100
Disease absence is evaluated by
Let’s see how these measures are applied in public health
situations. Assume that 200 people are tested for a
particular disease; 30 people tested positive for the disease, and
170 people do not have the disease.
Calculate (the answers are below).
1. Prevalence
2. Sensitivity
3. Specificity
PUH 5302, Applied Biostatistics 4
UNIT x STUDY GUIDE
Title
4. Positive predictive value
5. Negative predictive value
Answers:
1. Prevalence
Total disease / Total = 30 / 200 x 100 = 15%
2. Sensitivity
A / (A + C) x 100
25 / 30 x 100 = 83.3%
3. Specificity
D / (D + B) x 100
120 / 170 x 100 = 70.58%
4. Positive Predictive Value
P(Disease | Screen Positive) = Positive for Disease (A) / Total
Positive (A + B)
25 / 75 x 100 = 33.33 %
5. Negative Predictive Value
P(Disease Free | Screen Negative) = Negative for No Disease
(D) / Total Negative (C = D)
120 / 125 x 100 = 96%
Using this method, public health officials are able to compare
and contrast and report diseases and other
public health issues effectively within a population.
In another example, a screening test for Down Syndrome was
conducted which yielded the following results:
Screening Test Result Affected Fetus Unaffected Fetus Total
Positive 17 251 268
Negative 5 449 454
Total 22 700 722
Thus, the performance characteristics of the test are:
=0.772
700 =0.641
Fetus) = 251 / 700 = 0.359
ative Fraction = P (Screen Negative | Affected
Fetus) = 5 / 22 = 0.227
Interpretation of results:
probability that the screening test will be
positive.
ffected fetus, there is a 64.1%
probability that the screening test will
be negative.
However, the false positive and false negative fractions are a
concern of this test.
probability that the screening test will be
positive.
a 22.7% probability that the test will be
negative.
Sample Size Determination
In this section, we will only briefly discuss sample size and
sample size determination because there is a
whole lesson on this further in the course. For any research
involving subjects (participants) within a
PUH 5302, Applied Biostatistics 5
UNIT x STUDY GUIDE
Title
population, it is important to get the appropriate sample sizes
because sample sizes that are too small or too
large are detrimental to the study. The wrong sample size may
yield poor results, creating validity problems.
In order to overcome the problem of sample size in a research,
experts have come up with various methods
of sample size determination. Some of these include:
1. Various free sample size calculators on the Internet—if you
search “sample size calculator” on your
favorite search engine, there are many readily available.
2. Survey Monkey provides a sample size calculator on its
website (SurveyMonkey, n.d.).
3. National Statistical Service’s Sample Size Calculator is a
website.
4. Manual calculations are another option. Before using
calculations, we need to know few things,
namely:
a. population size,
b. margin of error or confidence interval (this determines how
much higher or lower than the
population mean the sample mean can fall, commonly a margin
of error of ± 5%),
c. confidence level (the most common confidence interval used
is 95% confident), and
d. standard deviation (many researchers safely use .5).
We will also need the z-score and the standard values used for
the most common confidence levels.
-score = 1.645
-score = 1.96
-score = 2.576
The next step is to insert the z-score, standard deviation, and
confidence interval into this equation:
Necessary sample size = (z-score)2 x StdDev x (1 - StdDev) /
(margin of error)2
Let’s see an example here assuming a 95% confidence level, .5
standard deviation, and a margin of error of ±
5%.
Sample size = ((1.96)2 x .5(.5)) / (.05)2
= (3.8416 x .25) / .0025
= .9604 / .0025
= 384.16
Subjects needed = 385 (Sample size)
The number of subjects needed will vary if a different z-score,
confidence interval, or margin of error is used.
Note: This equation is used when we do not know the
population size.
In summary, this lesson introduced you to the importance of
probability and how it can be used in the public
health field. There are many different types of sampling
methods, and it is important to be familiar with each
one. In addition, it is also crucial to be able to effectively
determine a sufficient sample size for a study. This
topic will be explored more in depth in a later unit.
References
Changing Minds. (n.d.). Choosing a sampling method. Retrieved
from
http://changingminds.org/explanations/research/sampling/choosi
ng_sampling.htm
Sullivan, L. M. (2018). Essentials of biostatistics in public
health (3rd ed.). Burlington, MA: Jones & Bartlett
Learning.
SurveyMonkey. (n.d.). Sample size calculator. Retrieved from
https://www.surveymonkey.com/mp/sample-
size-calculator/
PUH 5302, Applied Biostatistics 6
UNIT x STUDY GUIDE
Title
Learning Activities (Nongraded)
Nongraded Learning Activities are provided to aid students in
their course of study. You do not have to submit
them. If you have questions, contact your instructor for further
guidance and information.
For extra practice with probability concepts, complete the
following Chapter 5 practice problems on pages 99–
100 in your textbook: 12, 13, 14, 15, and 18. Be sure to show all
of your work.
PUH 5302, Applied Biostatistics 1 Course Learning Outcomes.docx

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PUH 5302, Applied Biostatistics 1 Course Learning Outcomes.docx

  • 1. PUH 5302, Applied Biostatistics 1 Course Learning Outcomes for Unit III Upon completion of this unit, students should be able to: 4. Recommend solutions to public health problems using biostatistical methods. 4.1 Compute and interpret probability for biostatistical analysis. 4.2 Draw conclusions about public health problems based on biostatistical methods. 5. Analyze public health information to interpret results of biostatistical analysis. 5.1 Analyze literature related to biostatistical analysis in the public health field. 5.2 Prepare an annotated bibliography that explores a topic related to public health issues. Course/Unit Learning Outcomes Learning Activity 4.1 Unit Lesson Chapter 5 Unit III Problem Solving 4.2 Unit Lesson Chapter 5
  • 2. Unit III Problem Solving 5.1 Chapter 5 Unit III Annotated Bibliography 5.2 Chapter 5 Unit III Annotated Bibliography Reading Assignment Chapter 5: The Role of Probability Unit Lesson Welcome to Unit III. In previous units, we discussed some fundamentals of biostatistics and their application to solving public health problems. In Unit III, we will compute, interpret, and apply probability, especially in relation to different populations. Computing and Interpreting Probabilities Probability means using a number (or numbers) to demonstrate how likely something is to occur. For example, if a coin is tossed, the probability of getting a heads or tail is one out of two chances; that is ½. Researchers have used probability studies to predict weather and other events and have been successful to some extent. Public health professionals have used statistical methods to predict the chances of health- related events, thereby providing arguments in favor of taking precautionary measures and warning the general public on important health issues.
  • 3. In biostatistics, we use both descriptive statistics and inferential statistics to address public health issues within a population. In most cases, researchers are not able to study the entire population; they try to get a sample from the population from which they can generalize their findings. Descriptive Statistics Aside from the use of probability sampling methods, there are other methods used for the computation and interpretation of data; these are generally known as descriptive statistics. With descriptive statistics, we UNIT III STUDY GUIDE Probability PUH 5302, Applied Biostatistics 2 UNIT x STUDY GUIDE Title normally compute the mean, mode, median, variance, and standard deviation. Information obtained using such computation methods is used for descriptive purposes, as opposed to information obtained from inferential statistics. Let’s examine this example using the numbers 5, 10, 2, 4, 6, 10,
  • 4. 2, 3, and 2. The mean is the sum of all the numbers ÷ the number of cases = 37 ÷ 9 = 4.11 The median is the middle number after the numbers have been arranged in an ascending or descending order = 4 The mode is the most frequently occurring number = 2 You can calculate the variance and standard deviation from the definitions given here: the squared differences of the mean. eviation is the √variance (the square root of the variance). Population and Sample
  • 5. A sample is just a smaller subgroup of a larger population. Researchers can take a sample from the population for a specific study. It is also possible to get different samples from a population. The most important thing here is that the sample characteristics must reflect the population because the results of the findings are generalized to the entire population. In this case, the sampling method is very important. There are different types of sampling methods, including: independent chances of been selected; number of sample; ing: the population is divided into subgroups and simple random sampling is used on each group; and random areas are selected to asses; chosen and then any method is used to sample the desired sample size; g similar research characteristics are used; and
  • 6. theory (Changing Minds, n.d.). Computing and interpreting probability for biostatistical analysis in health-related issues such as disease prevalence and incidence in a population is vital. The method of data collected and the type of analytical methods used are critical. Public health researchers may use two sampling methods: Probability sampling is the sampling method where every unit in the population has a chance of being selected in the sample (Sullivan, 2018). Probability sampling is widely used in quantitative sampling, making it possible for the selected sample to be unbiased. Unbiased reports from public health researchers are important for the veracity of the research studies. See the example below: PUH 5302, Applied Biostatistics 3 UNIT x STUDY GUIDE Title Assume that out of a population of 1500 persons, 1000 are male, and 500 are females. From those samples, 500 males and 300 females were also exposed to HIV. Representing the data in probability terms may help
  • 7. significantly for comparison and reporting purposes. This information could be reported thus: = 500 / 1500 = 0.33 Non-probability sampling is any sampling method where some of the population has no chance of selection (Sullivan, 2018). It is widely used in qualitative sampling. The use of nonprobability sampling makes it possible for public health researchers to insert descriptive comments regarding a sample, so they are cost effective and less time consuming. The non-probability sampling method makes it possible to still conduct sampling where it is impractical for probability sampling to be done. There are also some disadvantages associated with this sampling method. There are possibilities of lack of representation of some aspects of the population. In addition, generalization of results may be of low level and possible bias may be difficult to identify. This has a big implication for public health researchers who may want to report accurate results or findings. At any rate, such reports have also helped in providing vital information regarding disease and other aliments in the country. Proposing
  • 8. Solution s for Biostatistical Problems In proposing solutions for biostatistical problems, public health researchers, in addition to methods discussed above, use sensitivity and specificity testing, especially for investigations involving the presence of a diseases (Sullivan, 2018). Let’s define these terms and examine some applications. Sensitivity and Specificity Sensitivity and specificity tests are used in screening in order to help identify individuals who have contracted a specific disease for which the screening is done. Sensitivity is the likelihood that a test will show the presence of a disease, while specificity testing looks for the likelihood that a disease is absent. In order to understanding this concept, let’s examine the table below.
  • 9. Screening Disease No Disease Total Positive A = 25 B = 50 A + B = 75 Negative C = 5 D = 120 C + D = 125 Total A + C = 30 B + D = 170 N = 200 Using the table above, disease presence is evaluated by + D) x 100 Disease absence is evaluated by
  • 10. Let’s see how these measures are applied in public health situations. Assume that 200 people are tested for a particular disease; 30 people tested positive for the disease, and 170 people do not have the disease. Calculate (the answers are below). 1. Prevalence 2. Sensitivity 3. Specificity PUH 5302, Applied Biostatistics 4 UNIT x STUDY GUIDE Title 4. Positive predictive value
  • 11. 5. Negative predictive value Answers: 1. Prevalence Total disease / Total = 30 / 200 x 100 = 15% 2. Sensitivity A / (A + C) x 100 25 / 30 x 100 = 83.3% 3. Specificity D / (D + B) x 100 120 / 170 x 100 = 70.58% 4. Positive Predictive Value P(Disease | Screen Positive) = Positive for Disease (A) / Total Positive (A + B) 25 / 75 x 100 = 33.33 % 5. Negative Predictive Value P(Disease Free | Screen Negative) = Negative for No Disease (D) / Total Negative (C = D)
  • 12. 120 / 125 x 100 = 96% Using this method, public health officials are able to compare and contrast and report diseases and other public health issues effectively within a population. In another example, a screening test for Down Syndrome was conducted which yielded the following results: Screening Test Result Affected Fetus Unaffected Fetus Total Positive 17 251 268 Negative 5 449 454 Total 22 700 722 Thus, the performance characteristics of the test are:
  • 13. =0.772 700 =0.641 Fetus) = 251 / 700 = 0.359 ative Fraction = P (Screen Negative | Affected Fetus) = 5 / 22 = 0.227 Interpretation of results: probability that the screening test will be positive. ffected fetus, there is a 64.1% probability that the screening test will be negative. However, the false positive and false negative fractions are a concern of this test.
  • 14. probability that the screening test will be positive. a 22.7% probability that the test will be negative. Sample Size Determination In this section, we will only briefly discuss sample size and sample size determination because there is a whole lesson on this further in the course. For any research involving subjects (participants) within a PUH 5302, Applied Biostatistics 5 UNIT x STUDY GUIDE
  • 15. Title population, it is important to get the appropriate sample sizes because sample sizes that are too small or too large are detrimental to the study. The wrong sample size may yield poor results, creating validity problems. In order to overcome the problem of sample size in a research, experts have come up with various methods of sample size determination. Some of these include: 1. Various free sample size calculators on the Internet—if you search “sample size calculator” on your favorite search engine, there are many readily available. 2. Survey Monkey provides a sample size calculator on its website (SurveyMonkey, n.d.). 3. National Statistical Service’s Sample Size Calculator is a website. 4. Manual calculations are another option. Before using calculations, we need to know few things,
  • 16. namely: a. population size, b. margin of error or confidence interval (this determines how much higher or lower than the population mean the sample mean can fall, commonly a margin of error of ± 5%), c. confidence level (the most common confidence interval used is 95% confident), and d. standard deviation (many researchers safely use .5). We will also need the z-score and the standard values used for the most common confidence levels. -score = 1.645 -score = 1.96 -score = 2.576 The next step is to insert the z-score, standard deviation, and confidence interval into this equation:
  • 17. Necessary sample size = (z-score)2 x StdDev x (1 - StdDev) / (margin of error)2 Let’s see an example here assuming a 95% confidence level, .5 standard deviation, and a margin of error of ± 5%. Sample size = ((1.96)2 x .5(.5)) / (.05)2 = (3.8416 x .25) / .0025 = .9604 / .0025 = 384.16 Subjects needed = 385 (Sample size) The number of subjects needed will vary if a different z-score, confidence interval, or margin of error is used. Note: This equation is used when we do not know the population size. In summary, this lesson introduced you to the importance of probability and how it can be used in the public health field. There are many different types of sampling methods, and it is important to be familiar with each one. In addition, it is also crucial to be able to effectively
  • 18. determine a sufficient sample size for a study. This topic will be explored more in depth in a later unit. References Changing Minds. (n.d.). Choosing a sampling method. Retrieved from http://changingminds.org/explanations/research/sampling/choosi ng_sampling.htm Sullivan, L. M. (2018). Essentials of biostatistics in public health (3rd ed.). Burlington, MA: Jones & Bartlett Learning. SurveyMonkey. (n.d.). Sample size calculator. Retrieved from https://www.surveymonkey.com/mp/sample- size-calculator/
  • 19. PUH 5302, Applied Biostatistics 6 UNIT x STUDY GUIDE Title Learning Activities (Nongraded) Nongraded Learning Activities are provided to aid students in their course of study. You do not have to submit them. If you have questions, contact your instructor for further guidance and information. For extra practice with probability concepts, complete the following Chapter 5 practice problems on pages 99– 100 in your textbook: 12, 13, 14, 15, and 18. Be sure to show all of your work.