Progress on the cassava model in DSSAT (Decision Support System for Agro-technology Transfer) including a sensitivity and uncertainty analysis and some model testing on the ACAI trials.
Identification and verification of QTL associated with frost tolerance using ...PGS
This lecture was a part of Plant Genetics Seminars - PGS 2017/2018 at Assiut University. These seminars organized by Dr. Ahmed Sallam, Department of Genetics, Faculty of Agriculture, Assiut University
Abstract
Frost stress is one of the abiotic stresses that causes a significant reduction in winter faba bean yield in Europe. The main objective of this work is to genetically improve frost tolerance in winter faba bean by identifying and validating QTL associated with frost tolerance to be used in marker-assisted selection (MAS). Two different genetic backgrounds were used: a biparental population (BPP) consisting of 101 inbred lines, and 189 genotypes from single seed descent (SSD) from the Gottingen Winter bean Population (GWBP). All experiments were conducted in a frost growth chamber under controlled conditions. The symptoms of frost stress were scored. In addition, leaf fatty acid composition (FAC) was analyzed as a physiological trait in both populations. Five common QTLs for frost tolerance and FAC were found in both populations. Moreover, synteny analysis between Medicago truncatula (a model legume) and faba bean genomes was performed to identify candidate genes for the validated QTLs.
Uncertainty in simulating biomass yield and carbon-water fluxes from Euro-Mediterranean grasslands under Climate Changes_Renata Sándor
LiveM_Macsur_Bilbao_2014
Identification and verification of QTL associated with frost tolerance using ...PGS
This lecture was a part of Plant Genetics Seminars - PGS 2017/2018 at Assiut University. These seminars organized by Dr. Ahmed Sallam, Department of Genetics, Faculty of Agriculture, Assiut University
Abstract
Frost stress is one of the abiotic stresses that causes a significant reduction in winter faba bean yield in Europe. The main objective of this work is to genetically improve frost tolerance in winter faba bean by identifying and validating QTL associated with frost tolerance to be used in marker-assisted selection (MAS). Two different genetic backgrounds were used: a biparental population (BPP) consisting of 101 inbred lines, and 189 genotypes from single seed descent (SSD) from the Gottingen Winter bean Population (GWBP). All experiments were conducted in a frost growth chamber under controlled conditions. The symptoms of frost stress were scored. In addition, leaf fatty acid composition (FAC) was analyzed as a physiological trait in both populations. Five common QTLs for frost tolerance and FAC were found in both populations. Moreover, synteny analysis between Medicago truncatula (a model legume) and faba bean genomes was performed to identify candidate genes for the validated QTLs.
Uncertainty in simulating biomass yield and carbon-water fluxes from Euro-Mediterranean grasslands under Climate Changes_Renata Sándor
LiveM_Macsur_Bilbao_2014
Parallel session 2 3 the establishment of nutrient norms to improve cassava y...David Ngome
Developing site specific nutrient management recommendations for improved productivity of cassava and maize in Cassava-maize intercropping systems in Nigeria.
Session 6 2 Monitoring, Evaluation and Learning: Monitoring Uptake for Impact David Ngome
As the ACAI project shifts focus from research-related activities to dissemination activities, it becomes imperative that different results and targets are achieved, and how these results and targets will be monitored and be known to all stakeholders.
The presentation on ME&L highlighted the results to be achieved, targets to be met and methodologies to monitor number of farmers reached with the DSTs, farmers changing practices through use of the DSTs, and farmers benefiting from use of the DSTs.
Farmers reached will be monitored by aggregation of number of farmers who are aware and gain knowledge of ACAI DST per use case, per DST format and per partner dissemination approach.
Farmers changing practices through use of the DSTs will be monitored through panel surveys, which will be done on annually starting in 2019.
Farmers benefiting from use of the DSTs will be monitored by impact survey, which will be conducted at the end of the project.
Session 6 1 ACAI Work Stream 4 introductionDavid Ngome
This presentation was made by Pieter Pypers and it highlighted the following:
Project outcomes include a target number of extension agents trained on the use of the tools (1,259 extension agents), of which today 758 EAs (60%) have been involved in ACAI activities. Reaching a sufficient number of EAs is essential to have impact. Project outcomes focus on number of HHs benefiting from the tools (120,000) and the value generated through the use of these tools.
Different activities under the WS4 include (i) a second round of validation exercises, (ii) grassroot events, (iii) tool demonstration, (iv) training events, (v) production of training materials, (vi) production of farmer-friendly videos, (vii) promotion events, (viii) awareness campaigns, and (ix) cluster meetings.
The importance of ME&L was emphasized, and the process underlying impact evaluation: the project aims at tracking farmers who were reached, gained insights, continued using the tools, changed their practices and finally benefited. Most important: the project aims to understand what works and what doesn’t.
Timeline of activities: the project aims to conduct a number of sprints to advance the tools in preparation of the use of the tools in Nigeria, starting in April 2020.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
hematic appreciation test is a psychological assessment tool used to measure an individual's appreciation and understanding of specific themes or topics. This test helps to evaluate an individual's ability to connect different ideas and concepts within a given theme, as well as their overall comprehension and interpretation skills. The results of the test can provide valuable insights into an individual's cognitive abilities, creativity, and critical thinking skills
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...University of Maribor
Slides from talk:
Aleš Zamuda: Remote Sensing and Computational, Evolutionary, Supercomputing, and Intelligent Systems.
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Inter-Society Networking Panel GRSS/MTT-S/CIS Panel Session: Promoting Connection and Cooperation
https://www.etran.rs/2024/en/home-english/
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Phenomics assisted breeding in crop improvementIshaGoswami9
As the population is increasing and will reach about 9 billion upto 2050. Also due to climate change, it is difficult to meet the food requirement of such a large population. Facing the challenges presented by resource shortages, climate
change, and increasing global population, crop yield and quality need to be improved in a sustainable way over the coming decades. Genetic improvement by breeding is the best way to increase crop productivity. With the rapid progression of functional
genomics, an increasing number of crop genomes have been sequenced and dozens of genes influencing key agronomic traits have been identified. However, current genome sequence information has not been adequately exploited for understanding
the complex characteristics of multiple gene, owing to a lack of crop phenotypic data. Efficient, automatic, and accurate technologies and platforms that can capture phenotypic data that can
be linked to genomics information for crop improvement at all growth stages have become as important as genotyping. Thus,
high-throughput phenotyping has become the major bottleneck restricting crop breeding. Plant phenomics has been defined as the high-throughput, accurate acquisition and analysis of multi-dimensional phenotypes
during crop growing stages at the organism level, including the cell, tissue, organ, individual plant, plot, and field levels. With the rapid development of novel sensors, imaging technology,
and analysis methods, numerous infrastructure platforms have been developed for phenotyping.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Parallel session 2 3 the establishment of nutrient norms to improve cassava y...David Ngome
Developing site specific nutrient management recommendations for improved productivity of cassava and maize in Cassava-maize intercropping systems in Nigeria.
Session 6 2 Monitoring, Evaluation and Learning: Monitoring Uptake for Impact David Ngome
As the ACAI project shifts focus from research-related activities to dissemination activities, it becomes imperative that different results and targets are achieved, and how these results and targets will be monitored and be known to all stakeholders.
The presentation on ME&L highlighted the results to be achieved, targets to be met and methodologies to monitor number of farmers reached with the DSTs, farmers changing practices through use of the DSTs, and farmers benefiting from use of the DSTs.
Farmers reached will be monitored by aggregation of number of farmers who are aware and gain knowledge of ACAI DST per use case, per DST format and per partner dissemination approach.
Farmers changing practices through use of the DSTs will be monitored through panel surveys, which will be done on annually starting in 2019.
Farmers benefiting from use of the DSTs will be monitored by impact survey, which will be conducted at the end of the project.
Session 6 1 ACAI Work Stream 4 introductionDavid Ngome
This presentation was made by Pieter Pypers and it highlighted the following:
Project outcomes include a target number of extension agents trained on the use of the tools (1,259 extension agents), of which today 758 EAs (60%) have been involved in ACAI activities. Reaching a sufficient number of EAs is essential to have impact. Project outcomes focus on number of HHs benefiting from the tools (120,000) and the value generated through the use of these tools.
Different activities under the WS4 include (i) a second round of validation exercises, (ii) grassroot events, (iii) tool demonstration, (iv) training events, (v) production of training materials, (vi) production of farmer-friendly videos, (vii) promotion events, (viii) awareness campaigns, and (ix) cluster meetings.
The importance of ME&L was emphasized, and the process underlying impact evaluation: the project aims at tracking farmers who were reached, gained insights, continued using the tools, changed their practices and finally benefited. Most important: the project aims to understand what works and what doesn’t.
Timeline of activities: the project aims to conduct a number of sprints to advance the tools in preparation of the use of the tools in Nigeria, starting in April 2020.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
hematic appreciation test is a psychological assessment tool used to measure an individual's appreciation and understanding of specific themes or topics. This test helps to evaluate an individual's ability to connect different ideas and concepts within a given theme, as well as their overall comprehension and interpretation skills. The results of the test can provide valuable insights into an individual's cognitive abilities, creativity, and critical thinking skills
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...University of Maribor
Slides from talk:
Aleš Zamuda: Remote Sensing and Computational, Evolutionary, Supercomputing, and Intelligent Systems.
11th International Conference on Electrical, Electronics and Computer Engineering (IcETRAN), Niš, 3-6 June 2024
Inter-Society Networking Panel GRSS/MTT-S/CIS Panel Session: Promoting Connection and Cooperation
https://www.etran.rs/2024/en/home-english/
The ability to recreate computational results with minimal effort and actionable metrics provides a solid foundation for scientific research and software development. When people can replicate an analysis at the touch of a button using open-source software, open data, and methods to assess and compare proposals, it significantly eases verification of results, engagement with a diverse range of contributors, and progress. However, we have yet to fully achieve this; there are still many sociotechnical frictions.
Inspired by David Donoho's vision, this talk aims to revisit the three crucial pillars of frictionless reproducibility (data sharing, code sharing, and competitive challenges) with the perspective of deep software variability.
Our observation is that multiple layers — hardware, operating systems, third-party libraries, software versions, input data, compile-time options, and parameters — are subject to variability that exacerbates frictions but is also essential for achieving robust, generalizable results and fostering innovation. I will first review the literature, providing evidence of how the complex variability interactions across these layers affect qualitative and quantitative software properties, thereby complicating the reproduction and replication of scientific studies in various fields.
I will then present some software engineering and AI techniques that can support the strategic exploration of variability spaces. These include the use of abstractions and models (e.g., feature models), sampling strategies (e.g., uniform, random), cost-effective measurements (e.g., incremental build of software configurations), and dimensionality reduction methods (e.g., transfer learning, feature selection, software debloating).
I will finally argue that deep variability is both the problem and solution of frictionless reproducibility, calling the software science community to develop new methods and tools to manage variability and foster reproducibility in software systems.
Exposé invité Journées Nationales du GDR GPL 2024
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Phenomics assisted breeding in crop improvementIshaGoswami9
As the population is increasing and will reach about 9 billion upto 2050. Also due to climate change, it is difficult to meet the food requirement of such a large population. Facing the challenges presented by resource shortages, climate
change, and increasing global population, crop yield and quality need to be improved in a sustainable way over the coming decades. Genetic improvement by breeding is the best way to increase crop productivity. With the rapid progression of functional
genomics, an increasing number of crop genomes have been sequenced and dozens of genes influencing key agronomic traits have been identified. However, current genome sequence information has not been adequately exploited for understanding
the complex characteristics of multiple gene, owing to a lack of crop phenotypic data. Efficient, automatic, and accurate technologies and platforms that can capture phenotypic data that can
be linked to genomics information for crop improvement at all growth stages have become as important as genotyping. Thus,
high-throughput phenotyping has become the major bottleneck restricting crop breeding. Plant phenomics has been defined as the high-throughput, accurate acquisition and analysis of multi-dimensional phenotypes
during crop growing stages at the organism level, including the cell, tissue, organ, individual plant, plot, and field levels. With the rapid development of novel sensors, imaging technology,
and analysis methods, numerous infrastructure platforms have been developed for phenotyping.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Toxic effects of heavy metals : Lead and Arsenicsanjana502982
Heavy metals are naturally occuring metallic chemical elements that have relatively high density, and are toxic at even low concentrations. All toxic metals are termed as heavy metals irrespective of their atomic mass and density, eg. arsenic, lead, mercury, cadmium, thallium, chromium, etc.
What is greenhouse gasses and how many gasses are there to affect the Earth.moosaasad1975
What are greenhouse gasses how they affect the earth and its environment what is the future of the environment and earth how the weather and the climate effects.
The use of Nauplii and metanauplii artemia in aquaculture (brine shrimp).pptxMAGOTI ERNEST
Although Artemia has been known to man for centuries, its use as a food for the culture of larval organisms apparently began only in the 1930s, when several investigators found that it made an excellent food for newly hatched fish larvae (Litvinenko et al., 2023). As aquaculture developed in the 1960s and ‘70s, the use of Artemia also became more widespread, due both to its convenience and to its nutritional value for larval organisms (Arenas-Pardo et al., 2024). The fact that Artemia dormant cysts can be stored for long periods in cans, and then used as an off-the-shelf food requiring only 24 h of incubation makes them the most convenient, least labor-intensive, live food available for aquaculture (Sorgeloos & Roubach, 2021). The nutritional value of Artemia, especially for marine organisms, is not constant, but varies both geographically and temporally. During the last decade, however, both the causes of Artemia nutritional variability and methods to improve poorquality Artemia have been identified (Loufi et al., 2024).
Brine shrimp (Artemia spp.) are used in marine aquaculture worldwide. Annually, more than 2,000 metric tons of dry cysts are used for cultivation of fish, crustacean, and shellfish larva. Brine shrimp are important to aquaculture because newly hatched brine shrimp nauplii (larvae) provide a food source for many fish fry (Mozanzadeh et al., 2021). Culture and harvesting of brine shrimp eggs represents another aspect of the aquaculture industry. Nauplii and metanauplii of Artemia, commonly known as brine shrimp, play a crucial role in aquaculture due to their nutritional value and suitability as live feed for many aquatic species, particularly in larval stages (Sorgeloos & Roubach, 2021).
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
Nutraceutical market, scope and growth: Herbal drug technology
Parallel session 2 1 modeling the dynamics of starch content in cassava_patricia_moreno
1. www.iita.org | www.cgiar.org | www.acai-project.org
Update on PhD:
Modeling the dynamics of
starch content in cassava
Patricia Moreno-Cadena
2. OUTPUTS
INPUT
FACTORS
GLOBAL SENSITIVITY ANALYSIS
A
B
C
A
B
C
Apportions output variance into input factors
UNCERTAINTY ANALYSIS
Propagates input factor variability into output
Uncertainty
*Adapted from Muñoz-Carpena, 2017: Advanced modeling system class
time
Yield
Importance of genetic parameters and uncertainty
16 crop parameters
3. Importance of genetic parameters and uncertainty
www.iita.org | www.cgiar.org | www.acai-project.org
Parameter Parameter description PDF n Source of parameter values
B01ND
Thermal time from planting to first
branching (°Cd)
Triangular 22 (Bolaños, 1987; Irikura et al., 1979; Lian and Cock, 1979; Veltkamp, 1986)
B12ND
Mean thermal time between branching
levels after the first branching (°Cd)
Triangular 22 (Bolaños, 1987; Irikura et al., 1979; Lian and Cock, 1979; Veltkamp, 1986)
LAXS Maximum individual leaf area (cm2) Lognormal 60
(Alves, 2002; Alves and Setter, 2004, 2000; Ceballos and Cruz, 2012; CIAT,
1975, 1978; Connor et al., 1981; Gabriel et al., 2014; Irikura et al., 1979;
Keating et al., 1982; Lian and Cock, 1979; Matthews and Hunt, 1994;
Okogbenin et al., 2013; Pellet and El-Sharkawy, 1993; Pinheiro et al.,
2014; Santhosh Mithra et al., 2013; Streck et al., 2014; Veltkamp, 1986)
SLAS Specific leaf area (cm2/g) Normal 22
(Fukai and Hammer, 1987; Gabriel et al., 2014; Gijzen et al., 1990; Keating
et al., 1982; Matthews and Hunt, 1994; Pellet and El-Sharkawy, 1993;
Rosenthal and Ort, 2012; Vandegeer et al., 2013)
LLIFA
Active leaf area duration in thermal time
(°Cd) after full expansion
Weibull 338
(Alves, 2002; Bolaños, 1987; CIAT, 1978; Connor et al., 1981; Fukai and
Hammer, 1987; Howeler, 2012; Irikura et al., 1979; Lian and Cock, 1979;
Veltkamp, 1986)
LPEFR Leaf-petiole weight fraction (-) Gamma 337
(Cadavid, 1988; CIAT, 2013a; Cock, 2011; De Tafur et al., 1994; Fukai and
Hammer, 1987)
LNSLP
Leaf appearance slope (-) as proportion of
the leaf appearance curve of reference
Uniform 0
NODWT Individual node weight (g) Weibull 72
(CIAT. Unpublished results., n.d.; CIAT, 2013b; Lian and Cock, 1979; Porto,
1983)
NODL Internode length (cm) Lognormal 55 (CIAT. Unpublished results., n.d.)
PARUE
Radiation use efficiency (g dry matter MJ-
1)
Lognormal 27
(De Souza et al., 2016; El-Sharkawy and Mejia de Tafur, 2010; Ezui, 2017;
Leepipatpaiboon et al., 2009; Pellet and El-Sharkawy, 1997; Veltkamp,
1986; Yamamoto et al., 2004)
TBLSZ
Base temperature for leaf development
(˚C)
Uniform 3 (Fukai and Hammer, 1987; Keating et al., 1982; Manrique, 1992)
BR1F-BR4F Branch number per fork at fork 1-4 (#) Uniform 2e (Ceballos and Cruz, 2012; Lian and Cock, 1979)
KCAN
Photosynthetically active radiation (PAR)
extinction parameter (-)
Uniform 12
(Cock, 2011; Ezui, 2017; Fukai and Hammer, 1987; June, 1993; Pellet and
El-Sharkawy, 1993; Veltkamp, 1986)
4. Importance of genetic parameters and uncertainty
www.iita.org | www.cgiar.org | www.acai-project.org
Enhanced Sampling for Uniformity (eSU) Qualitative analysis (408
parameter combinations)
5. Importance of genetic parameters and uncertainty
www.iita.org | www.cgiar.org | www.acai-project.org
Sobol Quantitative (15360 parameter combinations)
6. Model calibration and evaluation
www.iita.org | www.cgiar.org | www.acai-project.org
PhD Candidate Joy Adiele (NOT trials-Nigeria)
TME 419
Simulated vs. observed harvest weight for the
variety TMS 419 in 39 NOT trials
7. Model calibration and evaluation
www.iita.org | www.cgiar.org | www.acai-project.org
PhD Candidate Rebecca Enesi (SPT trials)
TMS 0581- TME 419
8. Model calibration and evaluation
www.iita.org | www.cgiar.org | www.acai-project.org
PhD Candidate Rebecca Enesi (SPT trials)
TMS 0581- TME 419
9. Next steps
www.iita.org | www.cgiar.org | www.acai-project.org
• Evaluate the performance of the cassava model in Tanzania
• Adding algorithms to modify dry matter content From dry
weight to fresh weight.