This case report describes a novel mitochondrial metabolic myopathy (mtMM) caused by a variant in mitochondrial DNA. A 26-year-old male presented with episodic rhabdomyolysis and elevated creatine kinase. Genetic testing found a homoplasmic variant in the cytochrome c oxidase subunit III gene, encoding a defective protein. This pathogenic variant likely causes a defect in oxidative phosphorylation. Management focuses on diet, hydration and avoiding strenuous exercise to prevent rhabdomyolysis and damage to muscles, liver and kidneys. This condition represents a new mtMM identified through mitochondrial genome sequencing.