Presented at the 4th Microbiome R&D and Business Collaboration Forum: USA. To find out more, visit: www.global-engage.com
Greg Kuehn, President and COO of Metabiomics, presents the MB-01 colorectal adenoma clinical research study, sequencing technology and microbiome diagnostics platform.
Bio Whepon and COVID 19 - Is Corona Virus a Bio Weapon?Ravi Kumudesh
Is Corona Virus a Bio Weapon?
The Internet was brimming with conspiracies about the coronavirus, and, perhaps, one of the most prominent ones was that the virus could be a bioweapon.
According to an ET Prime report, a group of Chinese scientists in Canada were accused of spying and were stripped of their access to Canada’s National Microbiology Lab (NML) which is known to work on some of the most deadly pathogens.The alleged ‘policy breach’, highlighted the bioweapon program of other countries including China. Dr Francis Boyle, the creator of Bio Weapons Act, also claims that ‘the coronavirus is an offensive biological warfare weapon with DNA-genetic engineering’.Again, the claims about coronavirus being a biological weapon are unsubstantiated.
Novel Coronavirus thought to have transferred to Human from the seafood market in Wuhan, China become a one of the most dangerous viruses in the subfamily Orthocoronavirinae. According to the literature, the genome size of RNA of this viruses are greater than 20 kilobases.
Genetic engineers has committed to change the genes of some organisms to create new features of them, and this can be applied for the Coronavirus as well.
Breast Cancer Awareness Infographic - SR HealthcareStandard Register
Did you know every 23 seconds someone in the world is diagnosed with breast cancer? National Breast Cancer Awareness Month, celebrated every October, educates women about the importance of early detection.
Bio Whepon and COVID 19 - Is Corona Virus a Bio Weapon?Ravi Kumudesh
Is Corona Virus a Bio Weapon?
The Internet was brimming with conspiracies about the coronavirus, and, perhaps, one of the most prominent ones was that the virus could be a bioweapon.
According to an ET Prime report, a group of Chinese scientists in Canada were accused of spying and were stripped of their access to Canada’s National Microbiology Lab (NML) which is known to work on some of the most deadly pathogens.The alleged ‘policy breach’, highlighted the bioweapon program of other countries including China. Dr Francis Boyle, the creator of Bio Weapons Act, also claims that ‘the coronavirus is an offensive biological warfare weapon with DNA-genetic engineering’.Again, the claims about coronavirus being a biological weapon are unsubstantiated.
Novel Coronavirus thought to have transferred to Human from the seafood market in Wuhan, China become a one of the most dangerous viruses in the subfamily Orthocoronavirinae. According to the literature, the genome size of RNA of this viruses are greater than 20 kilobases.
Genetic engineers has committed to change the genes of some organisms to create new features of them, and this can be applied for the Coronavirus as well.
Breast Cancer Awareness Infographic - SR HealthcareStandard Register
Did you know every 23 seconds someone in the world is diagnosed with breast cancer? National Breast Cancer Awareness Month, celebrated every October, educates women about the importance of early detection.
Raw potato starch changes the butyrate-producing microbiota and host immune r...Laura Berry
Presented at the 4th Microbiome R&D and Business Collaboration Forum: USA. To find out more, visit: www.global-engage.com
Julian Trachsel from Iowa State University/USDA-ARS presents data that suggests raw potato starch may be an effective prebiotic to promote gut health and mitigate early life intestinal complications.
Using retrosynthesis in synthetic biology and metabolic engineeringLaura Berry
Presented at the 3rd Synthetic Biology Congress in London. To find out more, visit: www.global-engage.com
Jean-Loup Faulon, Senior Research Director at the Micalis Institute, INRA, presents RetroPath and SensiPath, the computer-aided design tools that can explore and enumerate metabolic pathways between pools of compounds.
A Forbidden Kingdom: The Fungal Microbiome in Skin Health, Why it's Important...Laura Berry
Presented at the 4th Microbiome R&D and Business Collaboration Forum: USA. To find out more, visit: www.global-engage.com
In the scope of human microbiome research, there remain two related and unexploited areas: skin and fungi. Tom Dawson presents examples of the importance and opportunity in leveraging the skin mycobiome. Tom reviews current understanding of a healthy versus diseased scalp, the scalp Mycobiome, the role of Malassezia in dandruff and seborrheic dermatitis, the state of the art in Malassezia genomics, and how current treatment options influence the scalp Mycobiome. He identifies candidate organisms, defines pathogenic mechanisms, and discusses successful treatment interventions for the consumer market.
Human Microbiome is the current project in Research field. The importance of Microorganisms in the human body, the importance and novel roe of the microorganisms on a human body is very effective and helpful. Fecal Transplantation is a unique and helpful technique to cure a dreadful disease naturally by means of microorganisms or introducing the normal flora in to the body again.
Synthetic biology towards gene therapy: synthetic repressors in Huntington's ...Laura Berry
Presented at the 3rd Synthetic Biology Congress in London. To find out more, visit: www.global-engage.com
Mark Isalan, Reader in Gene Network Engineering at Imperial College London, presents results of applying lessons learnt from synthetic biology to the treatment of Huntington’s disease.
Watch the full presentation at: blog.globalengage.co.uk/synthetic-biology-applications-huntingtons-disease
The Gateway to Health and Disease: the oral microbiome, autoimmune, and perso...DrBonnie360
Did you know, the health state of your mouth could influence and possibly determine the health of the rest of your body? First exploring the relationship of the gut microbiome and disease, at the 2017 Tri-Conference in San Francisco (Feb 2017), Bonnie explores the recent connections and research around the impact of the oral microbiome.
Carefully curating the latest research around the oral microbiome, autoimmune disease, and personalized nutrition, we present to you our hyperlinked slides. Enjoy!
nside Myriad. At Myriad, our goal is to make a difference in patients' lives and our work has been guided by this mission throughout the Company's history. ... Since 1991, Myriad has invested heavily in educating patients and healthcare professionals about the role genes and proteins play in disease.
Genetic Technologies Limited (ASX: GTG; Nasdaq: GENE), a diversified molecular diagnostics company. GTG offers cancer predictive testing and assessment tools to help physicians proactively manage patient health. The Company’s lead products GeneType for Breast Cancer and GeneType for Colorectal Cancer are clinically validated risk assessment tests and are first in class. Genetic Technologies is developing a pipeline of risk assessment products. Learn more at GENETechinfo.com.
Genetic Technologies Limited (ASX: GTG; Nasdaq: GENE), a diversified molecular diagnostics company. GTG offers cancer predictive testing and assessment tools to help physicians proactively manage patient health. The Company’s lead products GeneType for Breast Cancer and GeneType for Colorectal Cancer are clinically validated risk assessment tests and are first in class. Genetic Technologies is developing a pipeline of risk assessment products. Learn more at GENETechinfo.com.
Genetic Technologies Limited (ASX: GTG; Nasdaq: GENE), a diversified molecular diagnostics company. GTG offers cancer predictive testing and assessment tools to help physicians proactively manage patient health. The Company’s lead products GeneType for Breast Cancer and GeneType for Colorectal Cancer are clinically validated risk assessment tests and are first in class. Genetic Technologies is developing a pipeline of risk assessment products. Learn more at GENETechinfo.com.
Viatar CTC Solutions Inc. is a medical technology company focused on the treatment of patients with metastatic cancer. The Company's lead product, the Viatar™ Therapeutic Oncopheresis System, removes circulating tumor cells (CTCs) from whole blood using label-free cross-flow filtration. It is designed to be used as a periodic therapy to improve overall survival for a wide range of solid tumor types such as lung, breast, colon, prostate, and gastric cancers. This proprietary technology also powers the Company's liquid biopsy products, which are collection systems for use by genetic testing companies, researchers, and medical oncologists that provide a greater quantity and purity of circulating tumor cells for their molecular analysis and personalized medicine objectives. The Company’s liquid biopsy products are currently generating revenue, and sales are expected to increase in the coming quarters.
Kurt Schalper, MD, PhD, and Edward Garon, MD, MS, prepared useful Practice Aids pertaining to immuno-oncology biomarkers for this CME/MOC activity titled "Advances and Challenges in Refining the Use of Cancer Immunotherapies Through Biomarker Testing: Practical Guidance for Pathologists on the Front Lines of the Immuno-Oncology Revolution." For the full presentation, monograph, complete CME/MOC information, and to apply for credit, please visit us at http://bit.ly/2DE3X9J. CME/MOC credit will be available until December 2, 2019.
Exact Sciences Company Presentation Baird Healthcare ConferenceExact Sciences
Exact Sciences CEO Kevin Conroy's presentation slides, featuring updates on Cologuard's commercial launch, from the 2014 Baird Healthcare Conference September 4, 2014.
Raw potato starch changes the butyrate-producing microbiota and host immune r...Laura Berry
Presented at the 4th Microbiome R&D and Business Collaboration Forum: USA. To find out more, visit: www.global-engage.com
Julian Trachsel from Iowa State University/USDA-ARS presents data that suggests raw potato starch may be an effective prebiotic to promote gut health and mitigate early life intestinal complications.
Using retrosynthesis in synthetic biology and metabolic engineeringLaura Berry
Presented at the 3rd Synthetic Biology Congress in London. To find out more, visit: www.global-engage.com
Jean-Loup Faulon, Senior Research Director at the Micalis Institute, INRA, presents RetroPath and SensiPath, the computer-aided design tools that can explore and enumerate metabolic pathways between pools of compounds.
A Forbidden Kingdom: The Fungal Microbiome in Skin Health, Why it's Important...Laura Berry
Presented at the 4th Microbiome R&D and Business Collaboration Forum: USA. To find out more, visit: www.global-engage.com
In the scope of human microbiome research, there remain two related and unexploited areas: skin and fungi. Tom Dawson presents examples of the importance and opportunity in leveraging the skin mycobiome. Tom reviews current understanding of a healthy versus diseased scalp, the scalp Mycobiome, the role of Malassezia in dandruff and seborrheic dermatitis, the state of the art in Malassezia genomics, and how current treatment options influence the scalp Mycobiome. He identifies candidate organisms, defines pathogenic mechanisms, and discusses successful treatment interventions for the consumer market.
Human Microbiome is the current project in Research field. The importance of Microorganisms in the human body, the importance and novel roe of the microorganisms on a human body is very effective and helpful. Fecal Transplantation is a unique and helpful technique to cure a dreadful disease naturally by means of microorganisms or introducing the normal flora in to the body again.
Synthetic biology towards gene therapy: synthetic repressors in Huntington's ...Laura Berry
Presented at the 3rd Synthetic Biology Congress in London. To find out more, visit: www.global-engage.com
Mark Isalan, Reader in Gene Network Engineering at Imperial College London, presents results of applying lessons learnt from synthetic biology to the treatment of Huntington’s disease.
Watch the full presentation at: blog.globalengage.co.uk/synthetic-biology-applications-huntingtons-disease
The Gateway to Health and Disease: the oral microbiome, autoimmune, and perso...DrBonnie360
Did you know, the health state of your mouth could influence and possibly determine the health of the rest of your body? First exploring the relationship of the gut microbiome and disease, at the 2017 Tri-Conference in San Francisco (Feb 2017), Bonnie explores the recent connections and research around the impact of the oral microbiome.
Carefully curating the latest research around the oral microbiome, autoimmune disease, and personalized nutrition, we present to you our hyperlinked slides. Enjoy!
nside Myriad. At Myriad, our goal is to make a difference in patients' lives and our work has been guided by this mission throughout the Company's history. ... Since 1991, Myriad has invested heavily in educating patients and healthcare professionals about the role genes and proteins play in disease.
Genetic Technologies Limited (ASX: GTG; Nasdaq: GENE), a diversified molecular diagnostics company. GTG offers cancer predictive testing and assessment tools to help physicians proactively manage patient health. The Company’s lead products GeneType for Breast Cancer and GeneType for Colorectal Cancer are clinically validated risk assessment tests and are first in class. Genetic Technologies is developing a pipeline of risk assessment products. Learn more at GENETechinfo.com.
Genetic Technologies Limited (ASX: GTG; Nasdaq: GENE), a diversified molecular diagnostics company. GTG offers cancer predictive testing and assessment tools to help physicians proactively manage patient health. The Company’s lead products GeneType for Breast Cancer and GeneType for Colorectal Cancer are clinically validated risk assessment tests and are first in class. Genetic Technologies is developing a pipeline of risk assessment products. Learn more at GENETechinfo.com.
Genetic Technologies Limited (ASX: GTG; Nasdaq: GENE), a diversified molecular diagnostics company. GTG offers cancer predictive testing and assessment tools to help physicians proactively manage patient health. The Company’s lead products GeneType for Breast Cancer and GeneType for Colorectal Cancer are clinically validated risk assessment tests and are first in class. Genetic Technologies is developing a pipeline of risk assessment products. Learn more at GENETechinfo.com.
Viatar CTC Solutions Inc. is a medical technology company focused on the treatment of patients with metastatic cancer. The Company's lead product, the Viatar™ Therapeutic Oncopheresis System, removes circulating tumor cells (CTCs) from whole blood using label-free cross-flow filtration. It is designed to be used as a periodic therapy to improve overall survival for a wide range of solid tumor types such as lung, breast, colon, prostate, and gastric cancers. This proprietary technology also powers the Company's liquid biopsy products, which are collection systems for use by genetic testing companies, researchers, and medical oncologists that provide a greater quantity and purity of circulating tumor cells for their molecular analysis and personalized medicine objectives. The Company’s liquid biopsy products are currently generating revenue, and sales are expected to increase in the coming quarters.
Kurt Schalper, MD, PhD, and Edward Garon, MD, MS, prepared useful Practice Aids pertaining to immuno-oncology biomarkers for this CME/MOC activity titled "Advances and Challenges in Refining the Use of Cancer Immunotherapies Through Biomarker Testing: Practical Guidance for Pathologists on the Front Lines of the Immuno-Oncology Revolution." For the full presentation, monograph, complete CME/MOC information, and to apply for credit, please visit us at http://bit.ly/2DE3X9J. CME/MOC credit will be available until December 2, 2019.
Exact Sciences Company Presentation Baird Healthcare ConferenceExact Sciences
Exact Sciences CEO Kevin Conroy's presentation slides, featuring updates on Cologuard's commercial launch, from the 2014 Baird Healthcare Conference September 4, 2014.
Biopmedical is a Finalist in the mHealth Israel Startup Contest, Biopmedical can identify cancerous cells in epithelial tissue, offering standard colposcope capabilities with state-of-the-art, enhanced features. The novel device combines
advanced, high-resolution optics with integrated micro and macro cameras and other optical elements to produce highly sensitive optical signatures for automatic identification of suspicious areas. The collected data is combined and analyzed using Biop’s proprietary algorithm. Preliminary commercialization of Biop’s proprietary transducer will supplement or replace current colposcopy technologies.
How general internists can participate in the continuum of care for patients with cancer. (Talk given at Internal Medicine Grand Rounds, St. Elizabeth Hospital, General Santos City, 10 Feb 2021.)
Similar to Microbiome Diagnostics Platform for Microbiome Health and Colon Cancer Prevention (20)
Domains of unknown function are essential in yeastLaura Berry
Presented in the Synthetic Biology & Gene Editing strand of the 4Bio Summit. For more information, visit:
www.global-engage.com
~25% of yeast essential domains of unknown function (yeDUFs) are broadly conserved across all kingdoms of life (including Bacteria), while a small number are found in large numbers of proteins in mammals. In this presentation, Norman Goodacre from the FDA discusses 68 yeDUFs and their roles in alternative carbohydrate metabolism, mitochondrial transport, nuclear pore complex, mRNA processing, initiation of translation, protein complex assembly, and membrane-binding.
Data-driven design of cell factories and communitiesLaura Berry
Presented in the Synthetic Biology & Gene Editing strand of the 4Bio Summit. For more information, visit:
www.global-engage.com
Integration of omics data and systems biology models should optimise knowledge gain from synthetic biology experimentation. However, data is not leveraged effectively, due to a lack of readily available tools. In this presentation, Niko Sonnenschein from the Novo Nordisk Foundation describes a project which aims to make omics data useful to biotechnology and life science research by integrating systems biology with design in one platform.
Synthetic Biology via programmable directed evolutionLaura Berry
Presented in the Synthetic Biology & Gene Editing strand of the 4Bio Summit. For more information, visit:
www.global-engage.com
In this presentation, Mark Isalan from Imperial College London describes a programmable robot with a bioreactor that mixes bacteria and phage to create biomolecules and genetic logic gates.
Illuminating the druggable genome and the quest for new drug targetsLaura Berry
Presented at the Global Pharma R&D Informatics Congress. To find out more, visit:
www.global-engage.com
In this presentation, Tudor Oprea, Professor and Chief of Translational Informatics at the University of New Mexico, discusses the Illuminating the Druggable Genome Knowledge Management Center (IDG KMC), which evaluates, organises and distils more than 80 protein-centric and 20 gene-centric resources for 20,000+ curated human proteins.
Presented at the Global Pharma R&D Informatics Congress. To find out more, visit:
www.global-engage.com
Text mining extracts complex information from text (entities, events and epistemic knowledge). It can be used to support pathway construction and the design of experiments by extracting evidence from literature. In this presentation, Sophia Ananiadou, Director of the National Centre for Text Mining, discusses bridging the gap between knowledge and text in cancer biology.
3decision®: Bringing structural data analytics to the massesLaura Berry
Presented at the Global Pharma R&D Informatics Congress. To find out more, visit:
www.global-engage.com
Rational structure based drug design techniques are still used in >50% of all drug discovery projects. They strongly rely on structural data for proteins and protein:ligand complexes. However, widespread adoption of these techniques is hindered by the inconsistent data persistence and the complexity of analysing structural data. In this presentation, Peter Schmidtke from Discgine discusses 3decision®: a structural analytics platform aiming to facilitate and speed up the use of structural data.
Network-driven drug discovery: A computational network biology approach to dr...Laura Berry
Presented at the Global Pharma R&D Informatics Congress. To find out more, visit:
www.global-engage.com
In this presentation, Jonny Wray from e-Therapeutics discusses network-driven drug discovery, the application of concept, details of implementation and validation of the approach.
Measuring project success and Shannon's maxim: the enemy knows the systemLaura Berry
Presented at the Global Pharma R&D Informatics Congress. To find out more, visit:
www.global-engage.com
When drug discovery projects often require long periods of time and large amounts of resources to reach the clinical candidate generation phase, how do you tell which projects to continue and which are futile? Jeremy Edmunds, Director of Immunology Chemistry at Abbvie, discusses.
The Largest General Translational Informatics Public Private Partnership to DateLaura Berry
Presented at the Global Pharma R&D Informatics Congress. To find out more, visit:
www.global-engage.com
In this presentation, Jay Bergeron from Pfizer discusses eTriks: a 5 year IMI project to provide translational informatics products and services to other programs and EU Public Private Partnerships.
The challenges of Analytical Data Management in R&DLaura Berry
Presented at the Global Pharma R&D Informatics Congress. To find out more, visit:
www.global-engage.com
Analytical data is at the heart of pharmaceutical research, yet many organisations struggle with the variety of different formats, instrument vendors, and search and retrieval of data. In this presentation, Hans de Bie from ACD/Labs discusses automated capture, exchange formats, integrity, and next generation management systems.
Will data scientists lead the discovery of cancer therapeutics?Laura Berry
Presented at the Global Pharma R&D Informatics Congress. To find out more, visit:
www.global-engage.com
The rapidly decreasing cost of molecular measurement technologies not only enables the profiling of disease samples but also the cellular signatures of individual drugs in clinically relevant models. In this presentation, Bin Chen from the University of California San Francisco, proposes a systems-approach to identifying drugs that reverse the molecular state of a disease.
Improving exome sequencing, targeted sequencing, and low frequency variant de...Laura Berry
Presented in the NGS Tech & Applications Strand of the 4Bio Summit. To find out more, visit:
www.global-engage.com
In this presentation, Xiangyu Rao at Integrated DNA Technologies, discusses the Illumina partnership for exome sequencing and other NGS product beings developed at IDT.
Population scale sequencing by cost-efficient targeted NGSLaura Berry
Presented in the NGS Tech & Applications Strand of the 4Bio Summit. To find out more, visit:
www.global-engage.com
In this presentation, Vinzenz Lange from DKMS Life Science Lab, discusses building a workflow for high-throughput genotyping from 9000 distinct identifiers.
Disease interpretation of whole genome sequence variantsLaura Berry
Presented in the NGS Tech & Applications Strand of the 4Bio Summit. To find out more, visit:
www.global-engage.com
The emergence of whole genome sequencing (WGS) poses a challenge to variant disease interpretation, wherein much of the “variant avalanche” resides within promoters and enhancers. In this presentation, Simon Fishilevich from the Weizmann Institute of Sciences, discusses using GeneHancer and VarElect to discover the genetic cause of diseases.
Targeting giants - the pharmacology of adhesions GPCRsLaura Berry
Presented at the Global Medicinal Chemistry and GPCR Summit. To find out more, visit:
www.global-engage.com
Torsten Schöneberg, from the Rudolf Schönheimer Institute of
Biochemistry and University of Leipzig, presents an overview of our current knowledge on aGPCR activation and signal transduction with a focus on the latest findings regarding the interplay between ligand binding, mechanical force, and the tethered agonistic sequence.
Inventing, developing and commercialising targeted small-molecule drugs for p...Laura Berry
Presented at the Global Medicinal Chemistry and GPCR Summit. To find out more, visit:
www.global-engage.com
Mark Boys, the Principal Research Investigator at Array BioPharma, discusses various partnerships in which experimental drugs were generated, the deal structure and lessons learnt from each.
Using antitumor agents to probe the sensitivity contexts of cancer cells and ...Laura Berry
Presented at the Global Medicinal Chemistry and GPCR Summit. To find out more, visit:
www.global-engage.com
Eduard Felder is the Director and Head of Chemical Core Technologies in the Oncology Research department of Nerviano Medical Sciences. In this presentation Eduard introduces the purinome platform, an assembled panel of anti-tumour agents.
Accessing genetically tagged heterocycle libraries via a chemoresistant DNA s...Laura Berry
Presented at the Global Medicinal Chemistry and GPCR Summit. To find out more, visit:
www.global-engage.com
Andreas Brunschweiger, an Independent Group Leader at TU Dortmund, discusses the limitations of DNA-encoded compound libraries (DELs) and getting around these.
Next-Gen Drug Discovery: An Integrated Micro-Droplet Based PlatformLaura Berry
Presented at the Global Medicinal Chemistry and GPCR Summit. To find out more, visit:
www.global-engage.com
Alexander Alanine, CEO of Bacteva, introduces the Totally Integrated Medicines Engine (TIME), designed to speed up drug discovery with integrated microfluidics.
Lighting Rockets at the UChicago Microbiome LaunchpadLaura Berry
Presented at the 5th Microbiome R&D and Business Collaboration Forum: USA. To find out more, visit:
www.global-engage.com
With the recent gift of $100 million, the Duchossois Family Institute was established, providing UChicago with the resources to develop models for translating microbiome research. Matt Martin discusses their plans for expanding the support provided to faculty and the mechanisms for launching their startups and technologies.
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
Introduction:
RNA interference (RNAi) or Post-Transcriptional Gene Silencing (PTGS) is an important biological process for modulating eukaryotic gene expression.
It is highly conserved process of posttranscriptional gene silencing by which double stranded RNA (dsRNA) causes sequence-specific degradation of mRNA sequences.
dsRNA-induced gene silencing (RNAi) is reported in a wide range of eukaryotes ranging from worms, insects, mammals and plants.
This process mediates resistance to both endogenous parasitic and exogenous pathogenic nucleic acids, and regulates the expression of protein-coding genes.
What are small ncRNAs?
micro RNA (miRNA)
short interfering RNA (siRNA)
Properties of small non-coding RNA:
Involved in silencing mRNA transcripts.
Called “small” because they are usually only about 21-24 nucleotides long.
Synthesized by first cutting up longer precursor sequences (like the 61nt one that Lee discovered).
Silence an mRNA by base pairing with some sequence on the mRNA.
Discovery of siRNA?
The first small RNA:
In 1993 Rosalind Lee (Victor Ambros lab) was studying a non- coding gene in C. elegans, lin-4, that was involved in silencing of another gene, lin-14, at the appropriate time in the
development of the worm C. elegans.
Two small transcripts of lin-4 (22nt and 61nt) were found to be complementary to a sequence in the 3' UTR of lin-14.
Because lin-4 encoded no protein, she deduced that it must be these transcripts that are causing the silencing by RNA-RNA interactions.
Types of RNAi ( non coding RNA)
MiRNA
Length (23-25 nt)
Trans acting
Binds with target MRNA in mismatch
Translation inhibition
Si RNA
Length 21 nt.
Cis acting
Bind with target Mrna in perfect complementary sequence
Piwi-RNA
Length ; 25 to 36 nt.
Expressed in Germ Cells
Regulates trnasposomes activity
MECHANISM OF RNAI:
First the double-stranded RNA teams up with a protein complex named Dicer, which cuts the long RNA into short pieces.
Then another protein complex called RISC (RNA-induced silencing complex) discards one of the two RNA strands.
The RISC-docked, single-stranded RNA then pairs with the homologous mRNA and destroys it.
THE RISC COMPLEX:
RISC is large(>500kD) RNA multi- protein Binding complex which triggers MRNA degradation in response to MRNA
Unwinding of double stranded Si RNA by ATP independent Helicase
Active component of RISC is Ago proteins( ENDONUCLEASE) which cleave target MRNA.
DICER: endonuclease (RNase Family III)
Argonaute: Central Component of the RNA-Induced Silencing Complex (RISC)
One strand of the dsRNA produced by Dicer is retained in the RISC complex in association with Argonaute
ARGONAUTE PROTEIN :
1.PAZ(PIWI/Argonaute/ Zwille)- Recognition of target MRNA
2.PIWI (p-element induced wimpy Testis)- breaks Phosphodiester bond of mRNA.)RNAse H activity.
MiRNA:
The Double-stranded RNAs are naturally produced in eukaryotic cells during development, and they have a key role in regulating gene expression .
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Sérgio Sacani
We characterize the earliest galaxy population in the JADES Origins Field (JOF), the deepest
imaging field observed with JWST. We make use of the ancillary Hubble optical images (5 filters
spanning 0.4−0.9µm) and novel JWST images with 14 filters spanning 0.8−5µm, including 7 mediumband filters, and reaching total exposure times of up to 46 hours per filter. We combine all our data
at > 2.3µm to construct an ultradeep image, reaching as deep as ≈ 31.4 AB mag in the stack and
30.3-31.0 AB mag (5σ, r = 0.1” circular aperture) in individual filters. We measure photometric
redshifts and use robust selection criteria to identify a sample of eight galaxy candidates at redshifts
z = 11.5 − 15. These objects show compact half-light radii of R1/2 ∼ 50 − 200pc, stellar masses of
M⋆ ∼ 107−108M⊙, and star-formation rates of SFR ∼ 0.1−1 M⊙ yr−1
. Our search finds no candidates
at 15 < z < 20, placing upper limits at these redshifts. We develop a forward modeling approach to
infer the properties of the evolving luminosity function without binning in redshift or luminosity that
marginalizes over the photometric redshift uncertainty of our candidate galaxies and incorporates the
impact of non-detections. We find a z = 12 luminosity function in good agreement with prior results,
and that the luminosity function normalization and UV luminosity density decline by a factor of ∼ 2.5
from z = 12 to z = 14. We discuss the possible implications of our results in the context of theoretical
models for evolution of the dark matter halo mass function.
Richard's aventures in two entangled wonderlandsRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
(May 29th, 2024) Advancements in Intravital Microscopy- Insights for Preclini...Scintica Instrumentation
Intravital microscopy (IVM) is a powerful tool utilized to study cellular behavior over time and space in vivo. Much of our understanding of cell biology has been accomplished using various in vitro and ex vivo methods; however, these studies do not necessarily reflect the natural dynamics of biological processes. Unlike traditional cell culture or fixed tissue imaging, IVM allows for the ultra-fast high-resolution imaging of cellular processes over time and space and were studied in its natural environment. Real-time visualization of biological processes in the context of an intact organism helps maintain physiological relevance and provide insights into the progression of disease, response to treatments or developmental processes.
In this webinar we give an overview of advanced applications of the IVM system in preclinical research. IVIM technology is a provider of all-in-one intravital microscopy systems and solutions optimized for in vivo imaging of live animal models at sub-micron resolution. The system’s unique features and user-friendly software enables researchers to probe fast dynamic biological processes such as immune cell tracking, cell-cell interaction as well as vascularization and tumor metastasis with exceptional detail. This webinar will also give an overview of IVM being utilized in drug development, offering a view into the intricate interaction between drugs/nanoparticles and tissues in vivo and allows for the evaluation of therapeutic intervention in a variety of tissues and organs. This interdisciplinary collaboration continues to drive the advancements of novel therapeutic strategies.
Deep Behavioral Phenotyping in Systems Neuroscience for Functional Atlasing a...Ana Luísa Pinho
Functional Magnetic Resonance Imaging (fMRI) provides means to characterize brain activations in response to behavior. However, cognitive neuroscience has been limited to group-level effects referring to the performance of specific tasks. To obtain the functional profile of elementary cognitive mechanisms, the combination of brain responses to many tasks is required. Yet, to date, both structural atlases and parcellation-based activations do not fully account for cognitive function and still present several limitations. Further, they do not adapt overall to individual characteristics. In this talk, I will give an account of deep-behavioral phenotyping strategies, namely data-driven methods in large task-fMRI datasets, to optimize functional brain-data collection and improve inference of effects-of-interest related to mental processes. Key to this approach is the employment of fast multi-functional paradigms rich on features that can be well parametrized and, consequently, facilitate the creation of psycho-physiological constructs to be modelled with imaging data. Particular emphasis will be given to music stimuli when studying high-order cognitive mechanisms, due to their ecological nature and quality to enable complex behavior compounded by discrete entities. I will also discuss how deep-behavioral phenotyping and individualized models applied to neuroimaging data can better account for the subject-specific organization of domain-general cognitive systems in the human brain. Finally, the accumulation of functional brain signatures brings the possibility to clarify relationships among tasks and create a univocal link between brain systems and mental functions through: (1) the development of ontologies proposing an organization of cognitive processes; and (2) brain-network taxonomies describing functional specialization. To this end, tools to improve commensurability in cognitive science are necessary, such as public repositories, ontology-based platforms and automated meta-analysis tools. I will thus discuss some brain-atlasing resources currently under development, and their applicability in cognitive as well as clinical neuroscience.
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
Lateral Ventricles.pdf very easy good diagrams comprehensive
Microbiome Diagnostics Platform for Microbiome Health and Colon Cancer Prevention
1. Metabiomics Safe Harbor Statement: This slide deck contains forward-looking
statements within the meaning of the Private Securities Litigation Reform Act of 1995,
including statements relating to the potential results and future outcomes our clinical
research and business plan; ability to discover biomarkers and diagnostic tests.
including the ability of the company’s tests to impact clinical practice. Forward-looking
statements are subject to risks and uncertainties that could cause actual results to
differ materially, and reported results should not be considered as an indication of
future performance. These risks and uncertainties include, but are not limited to: the
results of clinical and developmental studies and any resulting products and services;
the regulation of our tests by the FDA and other agencies abroad; and the other risks
set forth in the company’s business plans and presentations. These forward- looking
statements speak only as of the date hereof. Metabiomics disclaims any obligation to
update these forward-looking statements.
Microbiome MDx
Platform Overview
1
2. mission and vision
2Confidential and Proprietary Information - Not For Distribution
Our vision is to continuously advance our patented MultiTag™ DNA sequencing technology and metagenomics discovery platform to pursue
innovative molecular systems biology, biomarker discovery, and clinical research aimed at developing diagnostics and therapeutics for the
prevention of colon cancer and other gastrointestinal cancerous, autoimmune, and infectious diseases.
Our mission is to
Eliminate Colon Cancer
Worldwide with a Low-CosT,
Easy-to-use, Non-Invasive,
Screening test
for precancerous adenomas
3. colon cancer is a major global killer
121k
China
23%
56k
North America
11%
31k
South America
6%
Europe
34%
More than 1.5 million people around the world are diagnosed
with colon cancer each year, more than 600k die.
Colon cancer is the 3rd-most common cancer in the
world, and causes the 2nd-most number of deaths.
122k
Asia
23%
CRC creates $14 Billion in healthcare costs in the US
annually.
187k
In the US, there are 137,000 new cases every year, 56,000
deaths. 3Confidential and Proprietary Information - Not For Distribution
4. but it shouldn’t beColon cancer is the most preventable, yet least prevented cancer
4
47%
of Americans do not adhere to
public health screening
guidelines
60% of Cancers are not detected
until later stages 3 and 4
14M Colonoscopies are performed
annually
3%
Since 1998 there has been a
3% annual decline in CRC
deaths due to the detection
and removal of adenomas
5. Early Detection Saves Lives
5Confidential and Proprietary Information - Not For Distribution
It can take 10 years for a
polyp to develop into
cancer
100% 10-year survival
rate with detection of
pre-cancer
Stage 1 cancer rapidly
advances to stage 4 in a
few years
Chances of survival fall
drastically in late stage
cancers
Healthcare costs for
patients with stage 4
cancer is $140k
0%
25%
50%
75%
100%
$0
$35,000
$70,000
$105,000
$140,000
Pre-Cancer Stage 1 Stage 2 Stage 3 Stage 4
CRC Management Costs Survival Rate
6. intercepting colon cancer is Possible
6Confidential and Proprietary Information - Not For Distribution
Metabiomics Microbiome MDx is only test with high
sensitivity to hyperplastic polyps and adenomas
hyperproliferation
hyperplastic polyps
adenomatous polyps
Severe dysplasia
precancerous polyp
adenocarcinoma
malignant
invasive cancer
malignant
7. existing non-invasive Tests Miss Pre-Cancerous Polyps
7Confidential and Proprietary Information - Not For Distribution
Non-Advanced Adenomas
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
FOBT-low
FOBT-high
FIT-Low
FIT-M
id
Fit-HighEXAS
<
5
m
m
EXAS
<
5-9
m
m
Specificity Sensitivity
FOBT and FIT tests
detect blood in fecal
samples
Many adenomas do not
bleed, FOBT and FIT
have low sensitivity
FOBT & FIT tests have
utility due to high
specificity and low cost
Exact Sciences adds
methylation/mutation
markers + FIT
Epi ProColon blood test
claims no sensitivity to
adenomas
Advanced Adenomas
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
FOBT-low
FOBT-high
FIT-Low
FIT-M
id
FIT-High
FIT-DeepC
EXAS
Stage I-IV Cancer
10%
20%
30%
40%
50%
60%
70%
80%
90%
100%
FOBT-lowFOBT-high
FIT-Low
FIT-M
id
Fit-High
FIT-DeepC
EXAS
EpiProColon
Colorectal Cancer Screening for Average-Risk North Americans: An Economic Evaluation, Cologuard Exec Summary
8. We Have A Solution
8
Highest Accuracy
Metabiomics MultiTagDx screening test can
detect the smallest precancerous adenomas
Earliest Detection
Microbiome disruption/dysbiosis provides the
earliest warning signs of polyps and
carcinogenesis
Non-Invasive and Easy-to-Use
Low-cost, easy-to-use, stool collection kits require
no stool contact and can be mailed to our
centralized testing facility
Cost-Effective
Leveraging Next-Generation DNA Sequencing (NGS)
and our patented MultiTag process will reduce cost to
less than $200 per test
A game-changing Pre-Cancerous Adenoma Screening Test for
Colon Cancer Prevention
After detection, colon polyps will be removed via a
follow-up colonoscopy and polypectomy
88% - 96%
Sensitivity
92% - 96%
Specificity
Adenoma (119) vs Healthy (112)
10-fold cross-validation test
pre-publication, subject to change
9. metabiomics Team
9Confidential and Proprietary Information - Not For Distribution
Visionary Entrepreneur and Inventor,
Systems Engineer, Data Scientist
Thomas J. Kuehn, PHD
Chairman and CEO
Co-founder, Business Dev, Marketing,
Finance, R&D Management
Gregory J. Kuehn, MBA
President and COO
Experienced Executive, Sales
Reimbursement for Healthcare
Products + Services
Chris Metz
Business Development and Sales
Co-Founder, Pioneering molecular
ecologist, inventor, Former Director of
Harvard Genome Laboratory
Patrick Gillevet, PHD
Chairman Science Advisory Board
CEO COO
VP AB
Tom Soriano - DOCRO Regulatory
Bob Thiel, PHD - DOCRO Statistics
Jim Linfield. JD - Cooley LLP
Erich Veitenheimer, JD PHD Cooley LLP
Lila Hope, JD PHD Cooley LLP
Sandy Sterrett, Jr. JD Rimon P.C.
Mark Hayman, JD PHD;
Se Jin Song PHD
Masi Sikaroodi, PHD
Bob Brown, PHD
Tiffany Weir, PHD
Paul DeRidder, MD, PHD
Advisors and Consultants
Leading Gastroenterology Practitioner,
Crohns and Colitis Fdn, Am. Soc.
Gastrointestinal Endoscopy
Louis Korman, MD
VP and Chief Medical Officer
Gastroenterology & Internal Medicine
National Board Crohn’s and Colitis Fdn,
President, APCR Clinical Research
Robert Hardi, MD
VP Clinical Research Director
Board Certified Pathologist, Anatomic,
clinical, cytopathology Founder of
Capital Digestive Care CAP /CLIA Lab
Jeff Baybick, MD
VP Pathology and Lab Operations
CMO
VP VP
10. MB-01
Colorectal Neoplasia Clinical studyMB-01 is the largest and most rigorous human microbiome diagnostics clinical study to date producing breakthrough protocols and predictive modeling
results.
10Confidential and Proprietary Information - Not For Distribution
Specific Aims
Determine the sensitivity and specificity for
detection of colorectal neoplasia based on 16S
rRNA microbiome analysis and clinical risk factors
Study Design
cross-sectional, observational, case-controlled
study, IRB Approved, ClinicalTrials.gov:
NCT02141945, 2 colonoscopy center sites in metro
DC area, Capital Digestive Care
Patient Population
260 patients undergoing CRC screening by
colonoscopy with collection of three samples per
patient including rectal swab, home stool sample
and biopsy
Classification and Metadata
Clinically relevant classes were defined by
gastroenterologists and pathologists including:
Hyper-plastic Polyp, Adenomas, Advanced
Adenoma, Age, Gender, BMI, Race, History of Polyps
11. microbiome diagnostics workflowMetabiomics is developing and end-to-end pipeline for microbiome diagnostics
11Confidential and Proprietary Information - Not For Distribution
02. Automated Sample Prep
Nucleic Acid Extraction
16S PCR
01. Sampling Kits
Patient and physician friendly
sampling kits, proper preservation
of samples
03. MultiTag Sequencing
Primer Kits
Patented 16S Library Preparation
kits enabling multiplexing of 96 -
384 samples/run (see MultiTag
Sequencing slide)
05. Computational
Diagnostics
Automated software algorithm for
diagnostics based on multivariate
statistics and machine learning
technology
Physician Report
1. Qualitative detection of colorectal
polyps and adenomas,
2. Qualitative detection and
classification of colorectal
hyperplastic polyps,
adenomatous polyps, and/or
advanced adenomas
04. NGS Sequencing
MiSeqDx, Ion Torrent PGM,
HiSeqDx (future)
MultiTagDx
Process
Sample-to-insight,
96X, 192X, 384x high-
throughput, multiplexing
12. Microbiome Sampling methods and kitsInnovative sampling standards and kits that can be used by the patient at home or by the physician during an examination
12Confidential and Proprietary Information - Not For Distribution
Puritan Hydraflock® Swabs Origin Sciences - OriCol
Use as rectal swab or home stool sampling direct from toilet paper
Patient and physician friendly
Validated by MB-01 study, 500+ samples with minimal PCR failures
No bowel preparation required
Biomarker-rich samples human and microbiome DNA, RNA, proteins, antibodies
Large sampling surface contact and volume
Significant reduction of stool contamination
Quantitative sample reproducibility
OriCol™ is an innovative device for the convenient and
effective sampling of mucocellular material that has
migrated along the entire colon to the rectum.
Advanced Puritan Hydraflock® swabs and RNA/DNA
preservative for transport at ambient temperatures,
Use as rectal swab or home stool sampling direct from
toilet paper to the swab with no stool contact
13. patented Tagged Fusion Primers
multitag SequencingAwarded in the US in 2013 (US Patent No, 8603749) and Europe (EP 2082063) in 2014,
awarded in Canada in 2016. Divisional “MultiTag Primer Kit” patents allowed in EU and
awarded in US in 2016. Priority date of 11/15/2006.
13Confidential and Proprietary Information - Not For Distribution
Simplifies Library Preparation
MTS supports pooling and sample handling for
multiplexing, managing and optimizing
throughput of NGS process.
04
Saves Time by Eliminating
Ligation Step
The elimination of the extra ligation step
saves 1-2 hours per run.
05
Provides Patent Protection &
FTO for MDx Assays
The Mayo vs. Prometheus decision limits
the ability to patent a correlation with a
measurement of a natural process.
06
Cost-Effective Sample Barcoding and
Multiplexing
3-piece Fusion Primer contains:
1) Patient/Sample Barcode - unique oligonucleotide
2) Target Primer - i.e. 16S variable regions
3) Sequencing Adapter for MiSeqDX, Ion Torrent PGM, ect…
01
Minimizes PCR Amplification Bias
A critical feature because the ligation of sample barcodes in 2-step
process has been proven to distort microbial community profiling
(relative abundance OTU tables)
02
Yields Accurate/Reproducible
Quantification of Relative Abundances
Essential for molecular diagnostics, MultiTag (barcoded fusion
primers) are the gold-standard in leading microbiome labs around
the world. Other primer designs have been shown to negatively
impact the reproducibility of microbiome studies.
03
Jones, MB, Library preparation methodology can influence genomic and functional predictions in human microbiome research, pnas (2015)
Binladen J, Gilbert MTP, Bollback JP, Panitz F, Bendixen C (2007) The Use of Coded PCR Primers Enables High-Throughput Sequencing of
Multiple Homolog Amplification Products by 454 Parallel Sequencing. PLoS ONE 2(2): e197. doi:10.1371/journal.pone.0000197
Sikaroodi 2015- Quality control in multi-tag pyrosequencing of microbial communities
MultiTag Sequencing Ecogenomics Analysis US Patent No 8,603,749 B2
14. Platform Independent Protocol for
MultiTag Next-Generation
sequenCing
14
Patented solution for sample multiplexing and barcoding with a fusion primer designed to minimize library
preparation, cost per sample/run, and PCR amplification bias while providing accurate quantification of amplicon
abundances.
Library Preparation with Fusion Primers
Involves the preparation of a DNA Library comprising a high-
throughput NGS adapter, a sample-specific barcode sequence and a
target primer sequence that are fused by PCR.
Pool Samples / Multiplex
Primer kits can include 96, 192, 384 or any number of unique
barcoded primers for multiplexing samples.
NGS Sequencing
Platform-independent primers can be customized for Illumina or
Life Technologies adapters or any sequencing-by-synthesis
instrument.
Data Processing and De-multiplexing
Sequences are assigned to samples during bioinformatics
processing using the sample-specific tags/barcodes.
Confidential and Proprietary Information - Not For Distribution
01
02
03
04 5’
5’3’
3’
Barcoded Amplicon flanked by NGS Sequencing Adapters
16S or 18S Amplicon flanked by linker sequences
+ MultiTag sequencing fusion primers
Gene TargetBarcodeNGS Adapter
3’
5’
5’
5’
PCR amplification with barcoded/tagged forward and reverse primers
15. microbiome diagnostics
18
The human gut microbiome provides the earliest
warning of precancerous colon polyps and
carcinogenesis.
Disruption/Dysbiosis of the microbiome has been
linked to inflammatory responses and metabolic
processing alterations
Chronic inflammation is known to be an important
feature in CRC progression, linked to oxidative DNA
damage
Bacterial mutagens can also damage genomic DNA
16S rRNA Microbial DNA sequencing platform
Metabiomics assays begin with microbial nucleic
acid extraction and next-generation sequencing
Sources: McAllister 2014, Dulal 2014, O’Keefe 2015, Arthur et al 2012,
Boleij 2012, Bongers et al 2014
01
02
03
04
16. Human Gut
Microbiome
health & disease
19
The microbiome co-evolved with the human host and is an
important player in human health and disease.
Nature Review - A microbial perspective of human developmental biology
Nature Review - Diet-microbiota interactions as moderators of human metabolism
The microbiome activates and regulates the immune system.
Nature Review - The microbiome and innate immunity
Nature Review - The microbiota in adaptive immune homeostasis and disease
Cancer J Author Manuscript - Microbiota and Immune Responses in Colon Cancer
The healthy microbiome is the first line of defense by fighting
off pathogenic bacteria.
Nature Review - Interactions between the microbiota and pathogenic bacteria
10 to 1
trillions of microbial cells vs
human cells, microbial cells
weighs ~3 pounds
100 to 1
1M+ microbial genes vs
23k human genes
Dysbiosis of the microbiome has been linked to a broad range
of human diseases.
Nature Review - Microbiome-wide association studies link dynamic microbial
consortia to disease
17. Microbiome MDX pipeline
20Confidential and Proprietary Information - Not For Distribution
Biomarker
Discovery
Clinical
Trials
Diagnostic
Modeling
Clinical
Validation
Service
Launch
MultiTag 16S rRNA Primer Kits
Microbiome Health Assays
Colorectal Adenoma LDT
IBD/IBS LDT
Colorectal Adenoma and
Carcinoma FDA Cleared IVDs
Microbiome Health, Metabolic
Disease, Obesity & Diabetes
Therapeutic and
Pharmabiomic Discovery
Our Microbiome NGS Diagnostics Platform and NGS Microbiome Sequencing Solutions supports a pipeline of MDx services
18. Contact UsMetabiomics currently has a “virtual office” but is planning on expanding in the Fitzsimmons Technology Park on the Anschutz medical
campus in Aurora, Colorado
Confidential and Proprietary Information - Not For Distribution
Email & Website
http://metabiomics.com
invest@metabiomics.com
Phone & Fax
Phone: 571-354-6171
Fax: 720-367-5071
Social Media
facebook
twitter @metabiomics