Lab 01 03_16
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The document discusses the status and plans for pipelines integrating T cell receptor (TCR) and B cell receptor (BCR) analysis. The current TCR pipeline involves preprocessing taking around 10 minutes, storage for 5 minutes, and analysis for half an hour, with a minor problem to fix. It plans to improve the TCR algorithm from mitcr to mixcr, which will support additional receptor types, and move the BCR pipeline from fasta to fastq format, which is almost complete. A framework is envisioned to handle both TCR and BCR pipelines where the downstream analysis would be similar but the upstream processes are very different currently.
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Post-Menstrual Smell- When to Suspect Vaginitis.pptx
How to Control Your Asthma Tips by gokuldas hospital.
How to Control Your Asthma Tips by gokuldas hospital.
Alzheimer’s Disease Case Conference: Gearing Up for the Expanding Role of Neu...
Alzheimer’s Disease Case Conference: Gearing Up for the Expanding Role of Neu...
NAVIGATING THE HORIZONS OF TIME LAPSE EMBRYO MONITORING.pdf
NAVIGATING THE HORIZONS OF TIME LAPSE EMBRYO MONITORING.pdf
8 Surprising Reasons To Meditate 40 Minutes A Day That Can Change Your Life.pptx
8 Surprising Reasons To Meditate 40 Minutes A Day That Can Change Your Life.pptx
Lab 01 03_16
- 1. pipeline integration (TCR) current status: preprocessing =~ 10 mins storage =~ 5 min analysis =~ half an hour TODO: minor problem to fix.
- 2. algorithm improvement TCR: mitcr -> mixcr (work in progress) mitcr: tcr only mixcr: TRA, TRB, TRG, TRD, IGH, IGL, IGK BCR: move from fasta to fastq (almost done)
- 3. Framework for both BCR and TCR Currently two pipeline: downstream is almost the same. upstream is very different.