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IMARIS - a comprehensive
image processing toolbox
          Daniel Reisen
      http://www.bitplane.com
                                1
Agenda

 What is Imaris
 Why 3D
 What additional information do we get from the 3rd
 dimension?
 What type of application or research fields can
 Imaris be used for?
 Imaris modules
 Imaris demonstration

                                                      2
What is Imaris?
 Software for data visualization, analysis,
 segmentation and interpretation of 3D and
 4D multi-channel microscopy datasets
 Runs on 64-bit PC and MacOS systems
 Supports over 40 microscopy file formats
 (from wide-field fluorescence, confocal,
 spinning disk, multi-photon, super-resolution,
 electron, … microscopes) up to 50 Gb
 Modular     based       application    allows
 customization of Imaris capabilities

                                                  3
Why 3D?
 Cells are 3-dimensional structures




                                      4
What additional information do we get from the 3rd dimension?

  Structural comprehension




                                                                5
What additional information do we get from the 3rd dimension?

  Cell detection




            16 cell stage embryo




                                                                6
What additional information do we get from the 3rd dimension?

  Neuron tracing




                                                                7
What additional information do we get from the 3rd dimension?

  Analytical plotting




                                                                8
What additional information do we get from the 3rd dimension?

  Cell tracking




                                                                9
What type of application or research fields can
Imaris be used for?
   Cancer Research
   Neuroscience
   Stem Cell Research
   Cell Biology
   Immunology
   Developmental Biology
   Pathology
   Microbiology
   Biochemistry
   Cardiovascular Research
   Plant biology
   + many others
                                                  10
Imaris Modules




                 11
12

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IMARIS - a comprehensive image processing toolbox

  • 1. IMARIS - a comprehensive image processing toolbox Daniel Reisen http://www.bitplane.com 1
  • 2. Agenda What is Imaris Why 3D What additional information do we get from the 3rd dimension? What type of application or research fields can Imaris be used for? Imaris modules Imaris demonstration 2
  • 3. What is Imaris? Software for data visualization, analysis, segmentation and interpretation of 3D and 4D multi-channel microscopy datasets Runs on 64-bit PC and MacOS systems Supports over 40 microscopy file formats (from wide-field fluorescence, confocal, spinning disk, multi-photon, super-resolution, electron, … microscopes) up to 50 Gb Modular based application allows customization of Imaris capabilities 3
  • 4. Why 3D? Cells are 3-dimensional structures 4
  • 5. What additional information do we get from the 3rd dimension? Structural comprehension 5
  • 6. What additional information do we get from the 3rd dimension? Cell detection 16 cell stage embryo 6
  • 7. What additional information do we get from the 3rd dimension? Neuron tracing 7
  • 8. What additional information do we get from the 3rd dimension? Analytical plotting 8
  • 9. What additional information do we get from the 3rd dimension? Cell tracking 9
  • 10. What type of application or research fields can Imaris be used for? Cancer Research Neuroscience Stem Cell Research Cell Biology Immunology Developmental Biology Pathology Microbiology Biochemistry Cardiovascular Research Plant biology + many others 10
  • 12. 12