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Digitisation of biological collections

A. Torralba-Burrial & F.J. Ocharan
Introduction and objectives

» Iberian Peninsula has 79 species Odonata
» There is a significant gap in accessible knowledge
» Dataset of Odonata deposited at BOS Arthropod
Collection (University of Oviedo):
» 16,604 specimens
» 1950- present
» Including
˃ holo & paratypes
˃ Threatened spp. data

Torralba-Burrial & Ocharan 2013
Odonata records in some European datasets

Other datasets info: Conce et al. 2010,
De Knijf & Anselin 2010, Parr 2010,
Termaat et al. 2010, GBIF
Geographic distribution BOS-Odo dataset

Torralba-Burrial & Ocharan 2013
Specimens by
provinces
 Data of:
40 Spanish provinces
2 old Portuguese
provinces
 Northern part of the
Peninsula is better
covered.
 Asturias (~ 4100
specimens)
 Huesca (~3400)

Torralba-Burrial & Ocharan 2013
BOS-Odo taxonomic distribution

Torralba-Burrial & Ocharan 2013
BOS-Odo sources

Torralba-Burrial & Ocharan 2013
BOS Arthropod Collection
digitisation workflow
 This is our workflow:
 Specimens preparation
 Data digitisation
 Retrospective
georefencing
Exporting datasets
 Data quality control
 Generalise sensitive data
 Generate metadata
Dataset release

Torralba-Burrial & Ocharan 2013
Specimens preparation and data digitisation

Torralba-Burrial & Ocharan 2013
Retrospective georeferencing

Chapman & Wieczorek 2006
Iberpix, Google Earth
Data quality control

Torralba-Burrial & Ocharan 2013
Generalising sensitive species data

Threatened species protected by inclusion in Habitats Directive and
Spanish legislation, which populations are generalising in exported
dataset. A) Coenagrion mercuriale; B) Macromia splendens; C)
Oxygastra curtisii; D) Gomphus graslinii.

Chapman & Grafton 2008
Generate metadata & dataset release
Generate metadata & dataset release
Generate metadata & dataset release
Generate metadata & dataset release
Citation
Datapaper:
Torralba-Burrial A, Ocharan FJ (2013) Iberian Odonata distribution: data of
the BOS Arthropod Collection (University of Oviedo, Spain). ZooKeys 306:
37–58. doi: 10.3897/zookeys.306.5289 Resource ID: GBIF key: http://
gbrds.gbif.org/browse/agent?uuid=7e31baf8-f762-11e1-a43900145eb45e9a
Resource citation:
Torralba-Burrial A, Ocharan FJ (2013 -). BOS Arthropod Collection Dataset:
Iberian Odonata distribution. 16604 data records. Contributed by
Torralba-Burrial A, Ocharan FJ, Outomuro D, Ocharan R, Salona MI,
Benitez-Donoso A, Martinez JA, Martinez SR, and Brotons-Padilla M.
Online at http://www.gbif.es:8080/ipt/archive.do?r=Bos-Odo and
http://www.unioviedo.es/BOS/Zoologia/artropodos/odonata, version 1.0
(last updated on 2013-04-08), GBIF key:
http://gbrds.gbif.org/browse/agent?uuid=7e31baf8-f762-11e1-a43900145eb45e9a. Data Paper ID: doi: 10.3897/zookeys.306.5289

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Iberian Odonata distribution: BOS Arthropod Collection digitisation

  • 1. Digitisation of biological collections A. Torralba-Burrial & F.J. Ocharan
  • 2.
  • 3. Introduction and objectives » Iberian Peninsula has 79 species Odonata » There is a significant gap in accessible knowledge » Dataset of Odonata deposited at BOS Arthropod Collection (University of Oviedo): » 16,604 specimens » 1950- present » Including ˃ holo & paratypes ˃ Threatened spp. data Torralba-Burrial & Ocharan 2013
  • 4. Odonata records in some European datasets Other datasets info: Conce et al. 2010, De Knijf & Anselin 2010, Parr 2010, Termaat et al. 2010, GBIF
  • 5.
  • 6. Geographic distribution BOS-Odo dataset Torralba-Burrial & Ocharan 2013
  • 7. Specimens by provinces  Data of: 40 Spanish provinces 2 old Portuguese provinces  Northern part of the Peninsula is better covered.  Asturias (~ 4100 specimens)  Huesca (~3400) Torralba-Burrial & Ocharan 2013
  • 10.
  • 11. BOS Arthropod Collection digitisation workflow  This is our workflow:  Specimens preparation  Data digitisation  Retrospective georefencing Exporting datasets  Data quality control  Generalise sensitive data  Generate metadata Dataset release Torralba-Burrial & Ocharan 2013
  • 12. Specimens preparation and data digitisation Torralba-Burrial & Ocharan 2013
  • 13. Retrospective georeferencing Chapman & Wieczorek 2006 Iberpix, Google Earth
  • 15. Generalising sensitive species data Threatened species protected by inclusion in Habitats Directive and Spanish legislation, which populations are generalising in exported dataset. A) Coenagrion mercuriale; B) Macromia splendens; C) Oxygastra curtisii; D) Gomphus graslinii. Chapman & Grafton 2008
  • 16. Generate metadata & dataset release
  • 17. Generate metadata & dataset release
  • 18. Generate metadata & dataset release
  • 19. Generate metadata & dataset release
  • 20. Citation Datapaper: Torralba-Burrial A, Ocharan FJ (2013) Iberian Odonata distribution: data of the BOS Arthropod Collection (University of Oviedo, Spain). ZooKeys 306: 37–58. doi: 10.3897/zookeys.306.5289 Resource ID: GBIF key: http:// gbrds.gbif.org/browse/agent?uuid=7e31baf8-f762-11e1-a43900145eb45e9a Resource citation: Torralba-Burrial A, Ocharan FJ (2013 -). BOS Arthropod Collection Dataset: Iberian Odonata distribution. 16604 data records. Contributed by Torralba-Burrial A, Ocharan FJ, Outomuro D, Ocharan R, Salona MI, Benitez-Donoso A, Martinez JA, Martinez SR, and Brotons-Padilla M. Online at http://www.gbif.es:8080/ipt/archive.do?r=Bos-Odo and http://www.unioviedo.es/BOS/Zoologia/artropodos/odonata, version 1.0 (last updated on 2013-04-08), GBIF key: http://gbrds.gbif.org/browse/agent?uuid=7e31baf8-f762-11e1-a43900145eb45e9a. Data Paper ID: doi: 10.3897/zookeys.306.5289