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Use of persistent identifiers to link heterogeneous data systems in the Integrated Earth Data Applications (IEDA) Facility

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AGU 2012 presentation in the "Data Stewardship, Citation with Confidence, and Preparing Next Generation of Data Managers" session IN22A.

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IEDA iedadata.org ! ! ! ! IN22A. Data Stewardship, Citation With Confidence, and Preparing Next Generation of Data Managers! Fall AGU 2012! Use of persistent identifiers to link heterogeneous data systems in the Integrated Earth Data Applications (IEDA) Facility! Leslie Hsu, Kerstin Lehnert, Suzanne Carbotte, Robert Arko, ! Vicki Ferrini, Suzanne OʼHara, J. Douglas Walker*! ! Lamont-Doherty Earth Observatory, Columbia University,! * University of Kansas!
IEDA iedadata.org IEDA hosts diverse data! ¤  IEDA is a data facility that hosts observational solid earth data and tools from the marine, terrestrial, and polar environments. ! ¤  Multiple diverse data systems that were developed independently, serving both ! ¤  sensor data from large collaborative cruise programs ! ¤  sample-based measurements from unique analytical laboratories ! ¤  IEDA data systems enable the data to be discovered and reused.! ! !
IEDA iedadata.org IEDA hosts diverse data! Multibeam bathymetry data ! Marine Geoscience Data System! •  Derived Geophysical Data! •  Analytical geochemistry data! •  Geochronological data! •  Sample metadata! •  Seismic Reflection Data! •  Photos and images! Soule et al., 2008!
IEDA iedadata.org IEDA hosts diverse data! Major element geochemical analyses! PetDB: The Petrological Database! •  Derived Geophysical Data! •  Analytical geochemistry data! •  Geochronological data! •  Sample metadata! •  Seismic Reflection Data! •  Photos and images! Standish et al., 2008!
IEDA iedadata.org IEDA hosts diverse data! Web galleries and highlight images, videos, maps, photos! MGDS and IEDA MediaBank! •  Derived Geophysical Data! •  Analytical geochemistry data! •  Geochronological data! •  Sample metadata! •  Seismic Reflection Data! •  Photos and images! Soule et al., 2008!
IEDA iedadata.org IEDA hosts diverse data! ¤  ASODS! ¤  ASP! ¤  Deep Lithosphere! ¤  EarthChem Library! ¤  EarthChem Portal! ¤  Geochron! ¤  GMRT! ¤  MGDS! ¤  MediaBank! ! ¤  NAVDAT! ¤  PetDB! ¤  SedDB! ¤  SESAR! ¤  VentDB! ¤  USAP-DCC! ¤  Data Management Plan Tool! ¤  Data Compliance Reporting Tool!
IEDA iedadata.org IEDA needs persistent identifiers! Persistent identifiers help IEDA achieve greater…! ¤ Accessibility: by navigating diverse but related data in the IEDA systems! ¤ Reliability: by maintaining links between IEDA and outside systems that persist through time! ¤ Citability: by enabling proper attribution to research with long- lived, citable, identifiers!
IEDA iedadata.org What are the IEDA identifiers?! ¤  IEDA Maintained IDs! ¤  People! ¤  Samples! ¤  Datasets / Datafiles / Software! ¤  Cruises/Expeditions! ¤  Externally maintained IDs, used in IEDA systems! ¤  Publications! ¤  Funding Awards! ¤  Platform IDs (ICES)! ¤  Cruise IDs (R2R)! ¤  Organization IDs (IANA)! ¤  Country, State, Language codes (ISO)!
IEDA iedadata.org People – GeoPass ID! ¤  GeoPass IDs identify users across multiple IEDA systems! ! ! ! ! ! ! ! ! Log in allows saved content:! • !data management plans! • !database search results! • !sample metadata profiles! • !submitted content! 148!
IEDA iedadata.org Samples – IGSN! ¤  The International Geo Sample Number ! ¤  uniquely identifies physical samples! ¤  links to detailed metadata profiles ! ¤  ensures unambiguous citation of samples in the literature ! ¤  Governed by IGSN e.V., distributed by SESAR! ¤  Syntax and implementation is guided by the IGSN e.V. and user community! MGD000973!
IEDA iedadata.org Data files - DOIs! ¤  Data file DOIs are assigned to digital resources (datasets, technical reports, and software) ! ¤  help ensure proper attribution to the author ! ¤  provide open access ! ¤  allow versioning ! ¤  long-term archiving in Columbia University Libraries! 10.1594/IEDA/100041!
IEDA iedadata.org Cruises and Expeditions! ¤  Cruise IDs group and link documents, sensor data, sample data, and information across IEDA. ! •  Cruise personnel and instruments! •  Geologic interpretation! •  Photographs! •  Bathymetry! •  Pressure and Temperature! •  Magnetic! •  Navigation! •  Seismic! •  Photographs! •  Samples! •  Fluid Geochemistry! AT15-17!
IEDA iedadata.org Publication DOIs! ¤  Externally assigned publication DOIs are used to link to the electronic article and capture IEDA data related to a published article and! 10.1016/j.epsl.2006.09.012!
IEDA iedadata.org Publication DOIs! http://www.earthchemportal.org/doidata/10.1016/j.epsl.2006.09.012! Elsevier Reception (Thursday evening) ! for more about IEDA and Elsevier linking!
IEDA iedadata.org Award numbers! ¤  Award IDs in the Data Compliance Reporting Tool group all data related to a funding award, and generate a dynamic report for funding agencies.! 0527053! Data Compliance Report!
IEDA iedadata.org Award numbers! 0527053! Data Compliance Report!
IEDA iedadata.org IEDA identifiers in a research workflow! 2. Data management plan! 1. Background research! 3. Sample management! 4. Dataset publication! 5. Article publication! 6. Funding agency report! GeoPassID! Cruise ID! Publication DOI! GeoPassID! IGSN! GeoPassID! Dataset DOI! GeoPassID! NSF Award #! Publication DOI! IGSN! Dataset DOI! Researchers!
IEDA iedadata.org Identifier challenges and future work! ¤  Challenges! ¤  Maintaining identifiers with growing content à needs active management! ¤  Incorporating legacy identifiers! à  listen to community feedback! ¤  Updating of content by users! à allow versioning! !
IEDA iedadata.org Identifier challenges and future work! ¤  Future work! ¤  Expand linking with electronic publications to more IEDA systems and publishers! ¤  Develop and implement new IDs! ¤  Experiment ID! ¤  Method ID! ¤  Leverage and link with existing IDs (e.g. people IDs)!
IEDA iedadata.org IEDA identifiers - Summary! ¤  Identifiers improve discovery and reuse of data within IEDA! ! ! ! ¤  Allow grouping and linking of diverse data and systems! ¤  Enable reliable linking to and from external systems! ¤  Support discovery and long-term availability! ¤  Increase citability and attribution for investigators ! Poster GP31A-1064 (Klump and Lehnert) ! for more about unique identifiers in the geological sciences !

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Use of persistent identifiers to link heterogeneous data systems in the Integrated Earth Data Applications (IEDA) Facility

  • 1. IEDA iedadata.org ! ! ! ! IN22A. Data Stewardship, Citation With Confidence, and Preparing Next Generation of Data Managers! Fall AGU 2012! Use of persistent identifiers to link heterogeneous data systems in the Integrated Earth Data Applications (IEDA) Facility! Leslie Hsu, Kerstin Lehnert, Suzanne Carbotte, Robert Arko, ! Vicki Ferrini, Suzanne OʼHara, J. Douglas Walker*! ! Lamont-Doherty Earth Observatory, Columbia University,! * University of Kansas!
  • 2. IEDA iedadata.org IEDA hosts diverse data! ¤  IEDA is a data facility that hosts observational solid earth data and tools from the marine, terrestrial, and polar environments. ! ¤  Multiple diverse data systems that were developed independently, serving both ! ¤  sensor data from large collaborative cruise programs ! ¤  sample-based measurements from unique analytical laboratories ! ¤  IEDA data systems enable the data to be discovered and reused.! ! !
  • 3. IEDA iedadata.org IEDA hosts diverse data! Multibeam bathymetry data ! Marine Geoscience Data System! •  Derived Geophysical Data! •  Analytical geochemistry data! •  Geochronological data! •  Sample metadata! •  Seismic Reflection Data! •  Photos and images! Soule et al., 2008!
  • 4. IEDA iedadata.org IEDA hosts diverse data! Major element geochemical analyses! PetDB: The Petrological Database! •  Derived Geophysical Data! •  Analytical geochemistry data! •  Geochronological data! •  Sample metadata! •  Seismic Reflection Data! •  Photos and images! Standish et al., 2008!
  • 5. IEDA iedadata.org IEDA hosts diverse data! Web galleries and highlight images, videos, maps, photos! MGDS and IEDA MediaBank! •  Derived Geophysical Data! •  Analytical geochemistry data! •  Geochronological data! •  Sample metadata! •  Seismic Reflection Data! •  Photos and images! Soule et al., 2008!
  • 6. IEDA iedadata.org IEDA hosts diverse data! ¤  ASODS! ¤  ASP! ¤  Deep Lithosphere! ¤  EarthChem Library! ¤  EarthChem Portal! ¤  Geochron! ¤  GMRT! ¤  MGDS! ¤  MediaBank! ! ¤  NAVDAT! ¤  PetDB! ¤  SedDB! ¤  SESAR! ¤  VentDB! ¤  USAP-DCC! ¤  Data Management Plan Tool! ¤  Data Compliance Reporting Tool!
  • 7. IEDA iedadata.org IEDA needs persistent identifiers! Persistent identifiers help IEDA achieve greater…! ¤ Accessibility: by navigating diverse but related data in the IEDA systems! ¤ Reliability: by maintaining links between IEDA and outside systems that persist through time! ¤ Citability: by enabling proper attribution to research with long- lived, citable, identifiers!
  • 8. IEDA iedadata.org What are the IEDA identifiers?! ¤  IEDA Maintained IDs! ¤  People! ¤  Samples! ¤  Datasets / Datafiles / Software! ¤  Cruises/Expeditions! ¤  Externally maintained IDs, used in IEDA systems! ¤  Publications! ¤  Funding Awards! ¤  Platform IDs (ICES)! ¤  Cruise IDs (R2R)! ¤  Organization IDs (IANA)! ¤  Country, State, Language codes (ISO)!
  • 9. IEDA iedadata.org People – GeoPass ID! ¤  GeoPass IDs identify users across multiple IEDA systems! ! ! ! ! ! ! ! ! Log in allows saved content:! • !data management plans! • !database search results! • !sample metadata profiles! • !submitted content! 148!
  • 10. IEDA iedadata.org Samples – IGSN! ¤  The International Geo Sample Number ! ¤  uniquely identifies physical samples! ¤  links to detailed metadata profiles ! ¤  ensures unambiguous citation of samples in the literature ! ¤  Governed by IGSN e.V., distributed by SESAR! ¤  Syntax and implementation is guided by the IGSN e.V. and user community! MGD000973!
  • 11. IEDA iedadata.org Data files - DOIs! ¤  Data file DOIs are assigned to digital resources (datasets, technical reports, and software) ! ¤  help ensure proper attribution to the author ! ¤  provide open access ! ¤  allow versioning ! ¤  long-term archiving in Columbia University Libraries! 10.1594/IEDA/100041!
  • 12. IEDA iedadata.org Cruises and Expeditions! ¤  Cruise IDs group and link documents, sensor data, sample data, and information across IEDA. ! •  Cruise personnel and instruments! •  Geologic interpretation! •  Photographs! •  Bathymetry! •  Pressure and Temperature! •  Magnetic! •  Navigation! •  Seismic! •  Photographs! •  Samples! •  Fluid Geochemistry! AT15-17!
  • 13. IEDA iedadata.org Publication DOIs! ¤  Externally assigned publication DOIs are used to link to the electronic article and capture IEDA data related to a published article and! 10.1016/j.epsl.2006.09.012!
  • 15. IEDA iedadata.org Award numbers! ¤  Award IDs in the Data Compliance Reporting Tool group all data related to a funding award, and generate a dynamic report for funding agencies.! 0527053! Data Compliance Report!
  • 17. IEDA iedadata.org IEDA identifiers in a research workflow! 2. Data management plan! 1. Background research! 3. Sample management! 4. Dataset publication! 5. Article publication! 6. Funding agency report! GeoPassID! Cruise ID! Publication DOI! GeoPassID! IGSN! GeoPassID! Dataset DOI! GeoPassID! NSF Award #! Publication DOI! IGSN! Dataset DOI! Researchers!
  • 18. IEDA iedadata.org Identifier challenges and future work! ¤  Challenges! ¤  Maintaining identifiers with growing content à needs active management! ¤  Incorporating legacy identifiers! à  listen to community feedback! ¤  Updating of content by users! à allow versioning! !
  • 19. IEDA iedadata.org Identifier challenges and future work! ¤  Future work! ¤  Expand linking with electronic publications to more IEDA systems and publishers! ¤  Develop and implement new IDs! ¤  Experiment ID! ¤  Method ID! ¤  Leverage and link with existing IDs (e.g. people IDs)!
  • 20. IEDA iedadata.org IEDA identifiers - Summary! ¤  Identifiers improve discovery and reuse of data within IEDA! ! ! ! ¤  Allow grouping and linking of diverse data and systems! ¤  Enable reliable linking to and from external systems! ¤  Support discovery and long-term availability! ¤  Increase citability and attribution for investigators ! Poster GP31A-1064 (Klump and Lehnert) ! for more about unique identifiers in the geological sciences !