Robert Barouki: Building up a European research and innovation agenda on envi...THL
Robert Barouki, Professor, Coordinator of the HERA Project, INSERM, France, at Europe That Protects - Safeguarding Our Planet, Safeguarding Our Health EU side event, 3-4 Dec 2019, THL, Helsinki
The UMI Innovation Contest has officially opened! The contest information can be viewed on the powerpoint slide in the link. There are attractive prizes to be won.
For more information about the contest, do approach us at our lunchtime roadshows from 12-15 March 2012.
Hope to see you all in the contest.
Robert Barouki: Building up a European research and innovation agenda on envi...THL
Robert Barouki, Professor, Coordinator of the HERA Project, INSERM, France, at Europe That Protects - Safeguarding Our Planet, Safeguarding Our Health EU side event, 3-4 Dec 2019, THL, Helsinki
The UMI Innovation Contest has officially opened! The contest information can be viewed on the powerpoint slide in the link. There are attractive prizes to be won.
For more information about the contest, do approach us at our lunchtime roadshows from 12-15 March 2012.
Hope to see you all in the contest.
Developing a national strategy to bring pathogen genomics into practiceExternalEvents
http://www.fao.org/about/meetings/wgs-on-food-safety-management/en/
Developing a national strategy to bring pathogen genomics into practice. Presentation from the Technical Meeting on the impact of Whole Genome Sequencing (WGS) on food safety management and GMI-9, 23-25 May 2016, Rome, Italy.
Planetary health: Sustainable procurement in the health sectorUN SPHS
Mirjana Milic, UNDP Associate Coordinator, has delivered a presentation about UNDP's commitment to protect the planet from the negative impacts of the health sector at the "Regional Capacity-building Workshop on Biodiversity and Health for the WHO European Region" on 23-25 October 2017 in Helsinki, Finland.
Building institutional research capacity for integrated approaches: An exampl...ILRI
Presentation by Hung Nguyen-Viet at a seminar at the Faculty of Sciences and Techniques, University of Franche-Comté, Besançon, France, 14 September 2015.
Convergence of Occupational and Environmental Exposure Science: the Whole Pic...Retired
The presentation was given at the 24th Annual Meeting of the International Society of Exposure Science (ISES) in Cincinnati (www.ISES2014.org).
It describes work in the HEALS project (www.HEALS-eu.eu). This project has received funding from the European Union’s Seventh Programme for research, technological development and demonstration under grant agreement No 603946.
.
Co-ordinated malaria research for better policy and practice: the role of res...ACT Consortium
Prof. David Schellenberg from the London School of Hygiene & Tropical Medicine presents on behalf of the ACT Consortium at the European Congress on Tropical Medicine and International Health in Basel, Switzerland, 8 September 2015
Highlights of research partnership between Hanoi School of Public Health (HSP...ILRI
Presented by Hung Nguyen-Viet during the visit of Dr. Mauro Dell'Ambrogio, State Secretary for Education, Research and Innovation of Switzerland to Hanoi School of Public Health, Hanoi, Vietnam, 12 June 2014.
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
Developing a national strategy to bring pathogen genomics into practiceExternalEvents
http://www.fao.org/about/meetings/wgs-on-food-safety-management/en/
Developing a national strategy to bring pathogen genomics into practice. Presentation from the Technical Meeting on the impact of Whole Genome Sequencing (WGS) on food safety management and GMI-9, 23-25 May 2016, Rome, Italy.
Planetary health: Sustainable procurement in the health sectorUN SPHS
Mirjana Milic, UNDP Associate Coordinator, has delivered a presentation about UNDP's commitment to protect the planet from the negative impacts of the health sector at the "Regional Capacity-building Workshop on Biodiversity and Health for the WHO European Region" on 23-25 October 2017 in Helsinki, Finland.
Building institutional research capacity for integrated approaches: An exampl...ILRI
Presentation by Hung Nguyen-Viet at a seminar at the Faculty of Sciences and Techniques, University of Franche-Comté, Besançon, France, 14 September 2015.
Convergence of Occupational and Environmental Exposure Science: the Whole Pic...Retired
The presentation was given at the 24th Annual Meeting of the International Society of Exposure Science (ISES) in Cincinnati (www.ISES2014.org).
It describes work in the HEALS project (www.HEALS-eu.eu). This project has received funding from the European Union’s Seventh Programme for research, technological development and demonstration under grant agreement No 603946.
.
Co-ordinated malaria research for better policy and practice: the role of res...ACT Consortium
Prof. David Schellenberg from the London School of Hygiene & Tropical Medicine presents on behalf of the ACT Consortium at the European Congress on Tropical Medicine and International Health in Basel, Switzerland, 8 September 2015
Highlights of research partnership between Hanoi School of Public Health (HSP...ILRI
Presented by Hung Nguyen-Viet during the visit of Dr. Mauro Dell'Ambrogio, State Secretary for Education, Research and Innovation of Switzerland to Hanoi School of Public Health, Hanoi, Vietnam, 12 June 2014.
A brief information about the SCOP protein database used in bioinformatics.
The Structural Classification of Proteins (SCOP) database is a comprehensive and authoritative resource for the structural and evolutionary relationships of proteins. It provides a detailed and curated classification of protein structures, grouping them into families, superfamilies, and folds based on their structural and sequence similarities.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Sérgio Sacani
Since volcanic activity was first discovered on Io from Voyager images in 1979, changes
on Io’s surface have been monitored from both spacecraft and ground-based telescopes.
Here, we present the highest spatial resolution images of Io ever obtained from a groundbased telescope. These images, acquired by the SHARK-VIS instrument on the Large
Binocular Telescope, show evidence of a major resurfacing event on Io’s trailing hemisphere. When compared to the most recent spacecraft images, the SHARK-VIS images
show that a plume deposit from a powerful eruption at Pillan Patera has covered part
of the long-lived Pele plume deposit. Although this type of resurfacing event may be common on Io, few have been detected due to the rarity of spacecraft visits and the previously low spatial resolution available from Earth-based telescopes. The SHARK-VIS instrument ushers in a new era of high resolution imaging of Io’s surface using adaptive
optics at visible wavelengths.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
Professional air quality monitoring systems provide immediate, on-site data for analysis, compliance, and decision-making.
Monitor common gases, weather parameters, particulates.
Seminar of U.V. Spectroscopy by SAMIR PANDASAMIR PANDA
Spectroscopy is a branch of science dealing the study of interaction of electromagnetic radiation with matter.
Ultraviolet-visible spectroscopy refers to absorption spectroscopy or reflect spectroscopy in the UV-VIS spectral region.
Ultraviolet-visible spectroscopy is an analytical method that can measure the amount of light received by the analyte.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
The increased availability of biomedical data, particularly in the public domain, offers the opportunity to better understand human health and to develop effective therapeutics for a wide range of unmet medical needs. However, data scientists remain stymied by the fact that data remain hard to find and to productively reuse because data and their metadata i) are wholly inaccessible, ii) are in non-standard or incompatible representations, iii) do not conform to community standards, and iv) have unclear or highly restricted terms and conditions that preclude legitimate reuse. These limitations require a rethink on data can be made machine and AI-ready - the key motivation behind the FAIR Guiding Principles. Concurrently, while recent efforts have explored the use of deep learning to fuse disparate data into predictive models for a wide range of biomedical applications, these models often fail even when the correct answer is already known, and fail to explain individual predictions in terms that data scientists can appreciate. These limitations suggest that new methods to produce practical artificial intelligence are still needed.
In this talk, I will discuss our work in (1) building an integrative knowledge infrastructure to prepare FAIR and "AI-ready" data and services along with (2) neurosymbolic AI methods to improve the quality of predictions and to generate plausible explanations. Attention is given to standards, platforms, and methods to wrangle knowledge into simple, but effective semantic and latent representations, and to make these available into standards-compliant and discoverable interfaces that can be used in model building, validation, and explanation. Our work, and those of others in the field, creates a baseline for building trustworthy and easy to deploy AI models in biomedicine.
Bio
Dr. Michel Dumontier is the Distinguished Professor of Data Science at Maastricht University, founder and executive director of the Institute of Data Science, and co-founder of the FAIR (Findable, Accessible, Interoperable and Reusable) data principles. His research explores socio-technological approaches for responsible discovery science, which includes collaborative multi-modal knowledge graphs, privacy-preserving distributed data mining, and AI methods for drug discovery and personalized medicine. His work is supported through the Dutch National Research Agenda, the Netherlands Organisation for Scientific Research, Horizon Europe, the European Open Science Cloud, the US National Institutes of Health, and a Marie-Curie Innovative Training Network. He is the editor-in-chief for the journal Data Science and is internationally recognized for his contributions in bioinformatics, biomedical informatics, and semantic technologies including ontologies and linked data.
1. HEALTH, CLIMATE AND INNOVATION
Óscar David Sánchez
Centro de Investigación Príncipe Felipe
October 16th, 2014
2. 1. Introduction to Health Research
1. Health and Biomedical research at a glance
2. The CIPF
2. Health and Climate Research
3. Innovation strategy at the CIPF
1. The CIPF science park
2. Spin-off creation model
4. HEALTH RESEARCH
Improve our understanding of the causes and mechanisms
underlying health, healthy ageing and disease
Enhance our ability to monitor health and to prevent,
detect, treat and manage disease
Support (older) persons to remain active and healthy
Test and demonstrate new models and tools for health and
care delivery
5. BIOMEDICAL RESEARCH
Translational Research
Basic
• Understanding of the
cellular, molecular and
physiological
mechanisms
underpinning human
health and disease
Preclinical
• Preparing the ground
for clinical research
with patients
• Pharmaceutical testing
Clinical
• Carried out with
patients
• Supervised by doctors
in a medical setting
• Clinical testing
6. THE CIPF
• Private not-for-profit
research
foundation
• Attached to the
Regional
Ministry of
Health
• Focused on
Basic and
Translational
Biomedical
Research
7. OUR RESEARCH
• Genes, targets, molecular and cellular
processes
• Drug and diagnostics development,
nanomedicine, regenerative medicine and
computational medicine
• Cancer, rare diseases, metabolic
diseases, aging and cognitive and
functional declining
• Scientific and technological expertise
applied to agrofood, environment,
cosmetics…
8. SCIENTIFIC PROGRAMMES
• Developing new diagnostic and therapeutio aproach for high
prevalence/impact diseases Advanced Therapies
• Using genomic data to gain insight in the processes by which
the genotype shapes the phenotype, with particular interests in
the study of disease mechanisms
Computational
Genomics
• Investigating at the molecular and cellular levels the
mechanisms underlying the essential cellular processes and
their changes in human pathologies
Molecular
Mechanisms
• Advancing in the biological and clinical knowledge of the RD,
promoting research on diagnostic tests, biomarkers and
therapies in the context of genomics and personalized medicine
Rare and Genetic
Diseases
• Basic and translational research on cognitive, motor, sleep and
circadian rhythms alterations in different pathological situations
Neurological
Impairment
9. BIOMEDICAL RESEARCH
Neurological
Impairment
Basic Preclinical Clinical
Advanced Therapies
Computational Genomics
Molecular
Mechanisms
Rare and Genetic Diseases
10. FIGURES
• 21 research labs and 9 technological
services
• ≈ 200 staff (85% devoted to research)
• 10M€ budget (≈ 55% from external
funding)
11. RESULTS
• ≈ 100 research projects/year
• ≈ 100 international publications/year
• Growing patent portfolio
• 4 spin-off companies
13. THE CHALLENGE
• Environmental factors (pollution, climate-related
factors, noise, chemicals, radiation
and exposure to green spaces) can have an
adverse (or a positive) impact on human
health
– One-quarter of the global non-communicable
disease burden, and more than one-third of the
burden among children, is due to modifiable
environmental and life-style factors.
• Huge potential for prevention to improve
lifelong health, wellbeing, and life
expectancy… And to tackle raising healthcare
costs.
14. EU RESEARCH AGENDA (I)
• EU has been funding multidisciplinary
research on climate, environment and
health since early FP5
• A cross-cutting issue that has emerged
especially in FP7 is the impact of global
change (especially climate change) on
health.
15. EU RESEARCH AGENDA (II)
• Three priorities in FP7
– Health impacts of climate change
– Health effects of environmental stressors
other than climate change (e.g., chemicals, air
pollution, electromagnetic fields)
– Methods and decision-support tools for
environmental health risk analysis and policy
development
16. FP7 PROJECTS (I)
• ARCRISK and CLEAR
– Potential health effects related to changing chemical exposures
of Arctic populations due to climate change
• ICEPURE
– Changing UV radiation patterns with consequent risk of
developing skin malignancies
• URGENCHE
– Developing and applying a methodological framework for the
assessment of the overall risks and benefits of alternative
greenhouse gas emission reduction policies for health and
well-being.
• PURGE
– Examining the health impacts of GHG reduction policies in
urban settings in Europe, China and India, using case studies
of 3-4 large and three smaller urban centres.
• ATOPICA:
– Exploring the combined pan-European impact of changes in
climate, land use and air pollution on allergen pollen-induced
diseases through a chain of quantitative physical and statistical
models.
17. FP7 PROJECTS (II)
• EDENEXT
– Focused on the emergence and risk of spread of vector-borne
diseases in Europe
• QWECI
– Aims to understand at a more fundamental level the climate
drivers of the vector-borne diseases malaria, Rift Valley
Fever and certain tick-borne diseases in Africa, which all
have major human and livestock health and economic
implications.
• HEALTHY FUTURES
– Construct a disease risk mapping system for three water-related
high-impact vector borne diseases (malaria, Rift
valley fever and schistosomiasis), accounting for
environmental/climatic trends and changes in socio-economic
conditions to predict future risk.
• VIROCLIME
– Investigated the impact of climate change on viral fluxes in
water.
• EO2HEAVEN
– Case study focusing on links between certain environmental,
including climatic, variables and the outbreak of cholera in
Africa.
18. EU EXPOSOME INITIATIVE
• Large-scale initiative, budget of €38
million until 2018, is the largest ever
initiative in the environment and health
research area in the EU.
– EXPOSOMICS: Enhanced exposure
assessment and omic profiling for high
priority environmental exposures in Europe
– HELIX: The human early-life exposome –
novel tools for integrating early-life
environmental exposures and child health
across Europe
– HEALS: Health and environment-wide
associations based on large population
surveys
19. HORIZON 2020
• Environment and health research activities
will be addressed mainly under the Societal
Challenge 1 (Health, Demographic Change
and Wellbeing).
• Relevant call topics also be published under
other challenges and actions
– Climate action, environment, resource efficiency
and raw materials
– Leadership in enabling and industrial
technologies (ICT and nanotechnologies)
– Food security, sustainable agriculture, marine and
maritime research and the bioeconomy.
20. WORKPROGRAMME 2014-2015 CLIMATE
IN HEALTH
• PHC 31 – 2014: Foresight for health policy
development and regulation
– Goal: The complex interactions between multiple
determinants of health and wellbeing are not well
understood. These include but are not limited to
air quality, climate change, traffic and congestion,
ambient noise, built environment…
– Outcome: Key driving forces- (external and
internal to the health systems) likely to influence
health and wellbeing in Europe and beyond in the
future.
21. WORKPROGRAMME 2014-2015 CLIMATE
IN HEALTH
• PHC 4 – 2015: Health promotion and disease
prevention: improved inter-sector co-operation
for environment and health based
interventions
– Outcome: On the basis of quantitative and
qualitative indicators, evidence on effective
interventions taking a ‘health in all’ approach,
linking environment, climate and health, allowing
informed decisions on multi-sector interventions
and related policies.
– Scope: integration of environment, climate and
health sectors (including but not limited to air
quality, water and sanitation, chemicals,
occupational factors, etc.)
24. TECH TRANSFER IN BIOMEDICINE
Basic Preclinical
Early-stage
development
companies
Clinical
Ph. 1
Clinical
Ph. 2
Big pharma
companies
Clinical
Ph. 3-4
Market
“Academic”
patents
Big pharma companies
25. TECH TRANSFER IN BIOMEDICINE
Company creation is one of the
best tech transfer mechanisms in
Health/Biotech
26. SPIN-OFF CREATION MODEL
• Technology/Licensing
agreement
– Otherwise it’s a start-up
• Collaboration agrement
– Company-CIPF collaborations,
confidentiality, conflicts of interests…
• Shareholder agreement
– The CIPF holds equity
27. THE CIPF SCIENCE PARK
A business-oriented environment for the
growth of start-ups and established
companies in the fields of Healthcare
and Biotechnology
You’re a research center…
Why are you housing companies?
28. THE QUESTION
What does a (new) (biotech)
company need?
1. Money
2. A good team
3. Sound science
4. Technology
29. OUR APPROACH
• We offer to companies what we offer to
(our) research labs
– Lab and office space
– Scientific equipment
– Access to technological services (animal
facilities, cytomics, screening, genomics and
genetics, confocal and electron microscopy,
proteomics, NMR, GMP facilities…)
– Coffee sharing! A collaborative environment
with researchers
30. THE MODEL
• No renting, but a collaboration
agreement
– Monthly fee depending on what the
company is using
– Technological and scientific infrastructure
as a service
– If a company needs something, they ask for
it and they get it
31. OUR GOALS
• Put together early stage spin-off/start-up
with big/leading companies
• Aligned with the CIPF research
mission
• Make innovation and technology
transfer happen:
– CIPF Company
– Company + CIPF Market
32. 1. Introduction to Health Research
1. Health and Biomedical research at a glance
2. The CIPF
2. Health and Climate Research
3. Innovation strategy at the CIPF
1. The CIPF science park
2. Spin-off creation model
In addition, there are worrying trends that reinforce the need for better prevention. Cancer rates are rising at around 1% per year, while fertility rates are declining in some countries. Allergies and asthma are also up around 5% per year.
Numerous examples exist as regards the cost-effectiveness and health benefits of preventive policy actions: e.g., the introduction of unleaded gasoline, and subsequent decrease in blood lead levels, has a significant economic value, primarily in the form of avoided health care costs and wage losses due to lower intelligence and illness.
The funding of these projects reflects the increasing importance of climate change in general and the lack of data as regards health impacts in particular, as identified in the 4th IPCC (Intergovernmental Panel on Climate Change) report.
Global climate change has the potential to remobilize environmental contaminants and alter contaminant transport pathways, fate, and routes of exposure in human populations. The Arctic is particularly sensitive to climate change and already exhibits clear impacts. Research into contaminant exposure and its effects on human health in the Arctic, in comparison with other exposed populations in Europe, presents an opportunity to gain insight into changes that may later impact other areas. The influence of climate change on contaminant spreading and transfer and the resultant risk to human populations in the Arctic and other areas of Europe will be studied by:1) Research on the ways in which climate change will affect the long-range transport and fate of selected groups of contaminants, and possible implications for the re-distribution of contaminants (geographically and between relevant environmental media). This will involve modelling, utilizing the information base that exists on the distribution of such contaminants in the Arctic and other areas of Europe;2) Research on the impacts that changing pathways and climatic conditions will have on contaminant uptake and transfer within food webs, leading to foods consumed by humans. This will involve experimental work, process studies and targeted analytical studies, the latter focused on supporting the modelling work and process studies related to human exposure to contaminants;3) Research focusing on human health, aimed at determining how climate-mediated changes in the environmental fate of selected groups of contaminants will result in changes in exposure of human populations, in the Arctic and in selected areas of Europe.
Ten projects were funded in FP7 with a focus on microbial risk factors for health in the environment. The main issue addressed was the risk of spread of infectious diseases due to climate change.
The EO2HEAVEN project carried out a case study focusing on links between certain environmental, including climatic, variables and the outbreak of cholera in Africa. The environmental risk of potential outbreaks in cholera endemic areas, i.e., areas which report regular outbreaks or areas where the outbreaks generally start, has been estimated using satellite and in situ data together with field and laboratory results and, where possible, taking into account demographic and socio-economic factors. Weather data has been used to track changes in rainfall and air temperature over time, whereas predicted climate data, generated by the downscaling of global circulation models to a regional level in order to incorporate local conditions, has been used to determine areas potentially under threat of cholera outbreaks under changing climate conditions. It was found that
environmental factors such as the accumulation of rainfall water over a period of time and a large spatial extent correlated more closely with case data whereas daily sunlight and water temperature values were associated with the pathogen dynamics.