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Golden Gat Ev3 The Plazi Markup System

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Talk on Plazi Markup System at Artdatenbanken Workshop

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The PLAZI Markup System Donat Agosti Terry Catapano Robert “Bob“ Morris Guido Sautter Universität Karlsruhe (TH) Research University – founded 1825
The PLAZI Markup System GoldenGATE Document Editor PLAZI Server PLAZI Search Portal External Data Sources Marked-Up Documents Queries Treatments, Detail Data, PDF Document Handles Links, Materials Citations Taxon LSIDs, GeoData New Taxon Names Taxonomic data sources & web services Search portal, TAPIR provider, RSS feed Document markup, external referencing XML & PDF storage, treatment server
The PLAZI Search Portal ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
The PLAZI Search Portal Probolomyrmex tani
The PLAZI Markup System GoldenGATE Document Editor PLAZI Server PLAZI Search Portal External Data Sources Marked-Up Documents Queries Treatments, Detail Data, PDF Document Handles Links, Materials Citations Taxon LSIDs, GeoData New Taxon Names Taxonomic data sources & web services Search portal, TAPIR provider, RSS feed Document markup, external referencing XML & PDF storage, treatment server
The PLAZI Server ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Web Service SRS PostgreSQL File System TN MC MD FT Document Management Data Index Data XML Documents Indexers Indexers Indexers Indexers
GoldenGATE Server Apache Tomcat GoldenGATE Server DIO DIO-SRS EXC RES SRS DIO DB GoldenGATE Editor DIO-CON eXist SRS Search Portal SRS TAPIR Service OCR Data Sources GBIF, etc Public EOL, etc Remote GoldenGATE Server DIO DIO-SRS SRS DIO DB RES-DIO SRS DB SRS DB UAA Extract individual treatments Transform to TaxonX Transform to SPM Forward updates & deletions Upload or update document Checkout document for further markup
The PLAZI Markup System GoldenGATE Document Editor PLAZI Server PLAZI Search Portal External Data Sources Marked-Up Documents Queries Treatments, Detail Data, PDF Document Handles Links, Materials Citations Taxon LSIDs, GeoData New Taxon Names Taxonomic data sources & web services Search portal, TAPIR provider, RSS feed Document markup, external referencing XML & PDF storage, treatment server
The PLAZI Markup Process ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],Printed document HTML document Scanning & OCR Layout Artifact s Paragraph Normalization Normal ized Document Taxon Name Markup Treatment Markup Treatments & Structure GoldenGATE Document Editor Abbyy FineReader MODS Location Markup Treatment Structure Structural Normalization
The GoldenGATE Editor ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
The GoldenGATE Editor
GoldenGATE Markup Wizard ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Community Markup Apache Tomcat GoldenGATE Server CMS DIO-SRS EXC DPS SRS DIO DB GoldenGATE Editor DIO-CON eXist SRS Search Portal SRS TAPIR Service OCR Data Sources GBIF, etc Public EOL, etc SRS DB Markup Community Portal Markup Volunteers Public Ranking USS ECS UAA DIO Community does inter-active part of markup Online interface, no local program Shows who con-tributes most GoldenGATE Editor em-bedded in Server Measures contribution
The PLAZI Markup System GoldenGATE Document Editor PLAZI Server PLAZI Search Portal External Data Sources Marked-Up Documents Queries Treatments, Detail Data, PDF Document Handles Links, Materials Citations Taxon LSIDs, GeoData New Taxon Names Taxonomic data sources & web services Search portal, TAPIR provider, RSS feed Document markup, external referencing XML & PDF storage, treatment server
The External Data Sources ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Thank you! Questions? Donat Agosti Terry Catapano Robert “Bob“ Morris Guido Sautter PLAZI homepage PLAZI search portal PLAZI main web portal GoldenGATE homepage [email_address] catapanoth @gmail.com ram @cs.umb.edu sautter @ipd.uka.de http://plazi. org http://plazi.org:8080/ GgServer http://plazi2.cs.umb.edu/GgServer http://idaho.ipd.uka.de/ GoldenGATE Universität Karlsruhe (TH) Research University – founded 1825
Outlook ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
The GoldenGATE Editor V3 ,[object Object],[object Object],Pre-OCR page images for correcting OCR errors Document navigator for finding stuff more quickly

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Golden Gat Ev3 The Plazi Markup System

  • 1. The PLAZI Markup System Donat Agosti Terry Catapano Robert “Bob“ Morris Guido Sautter Universität Karlsruhe (TH) Research University – founded 1825
  • 2. The PLAZI Markup System GoldenGATE Document Editor PLAZI Server PLAZI Search Portal External Data Sources Marked-Up Documents Queries Treatments, Detail Data, PDF Document Handles Links, Materials Citations Taxon LSIDs, GeoData New Taxon Names Taxonomic data sources & web services Search portal, TAPIR provider, RSS feed Document markup, external referencing XML & PDF storage, treatment server
  • 3.
  • 4. The PLAZI Search Portal Probolomyrmex tani
  • 5. The PLAZI Markup System GoldenGATE Document Editor PLAZI Server PLAZI Search Portal External Data Sources Marked-Up Documents Queries Treatments, Detail Data, PDF Document Handles Links, Materials Citations Taxon LSIDs, GeoData New Taxon Names Taxonomic data sources & web services Search portal, TAPIR provider, RSS feed Document markup, external referencing XML & PDF storage, treatment server
  • 6.
  • 7. GoldenGATE Server Apache Tomcat GoldenGATE Server DIO DIO-SRS EXC RES SRS DIO DB GoldenGATE Editor DIO-CON eXist SRS Search Portal SRS TAPIR Service OCR Data Sources GBIF, etc Public EOL, etc Remote GoldenGATE Server DIO DIO-SRS SRS DIO DB RES-DIO SRS DB SRS DB UAA Extract individual treatments Transform to TaxonX Transform to SPM Forward updates & deletions Upload or update document Checkout document for further markup
  • 8. The PLAZI Markup System GoldenGATE Document Editor PLAZI Server PLAZI Search Portal External Data Sources Marked-Up Documents Queries Treatments, Detail Data, PDF Document Handles Links, Materials Citations Taxon LSIDs, GeoData New Taxon Names Taxonomic data sources & web services Search portal, TAPIR provider, RSS feed Document markup, external referencing XML & PDF storage, treatment server
  • 9.
  • 10.
  • 12.
  • 13. Community Markup Apache Tomcat GoldenGATE Server CMS DIO-SRS EXC DPS SRS DIO DB GoldenGATE Editor DIO-CON eXist SRS Search Portal SRS TAPIR Service OCR Data Sources GBIF, etc Public EOL, etc SRS DB Markup Community Portal Markup Volunteers Public Ranking USS ECS UAA DIO Community does inter-active part of markup Online interface, no local program Shows who con-tributes most GoldenGATE Editor em-bedded in Server Measures contribution
  • 14. The PLAZI Markup System GoldenGATE Document Editor PLAZI Server PLAZI Search Portal External Data Sources Marked-Up Documents Queries Treatments, Detail Data, PDF Document Handles Links, Materials Citations Taxon LSIDs, GeoData New Taxon Names Taxonomic data sources & web services Search portal, TAPIR provider, RSS feed Document markup, external referencing XML & PDF storage, treatment server
  • 15.
  • 16. Thank you! Questions? Donat Agosti Terry Catapano Robert “Bob“ Morris Guido Sautter PLAZI homepage PLAZI search portal PLAZI main web portal GoldenGATE homepage [email_address] catapanoth @gmail.com ram @cs.umb.edu sautter @ipd.uka.de http://plazi. org http://plazi.org:8080/ GgServer http://plazi2.cs.umb.edu/GgServer http://idaho.ipd.uka.de/ GoldenGATE Universität Karlsruhe (TH) Research University – founded 1825
  • 17.
  • 18.