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Networks,
Cocaine, and
Fruit Flies: A
Data-Driven
Approach
DSC Europe 2023
Milan Petrović
About me
PhD student specializing in complex networks
Faculty of Informatics and Digital Technologies,
University of Rijeka, Croatia
Complex networks, data science, machine learning
Interdisciplinary research
Social interaction networks of fruit flies
What is social interaction
But why fruit flies?
Life cycle ~ 10 days
Genetic manipulation
Similarity between humans and flies
Influence of isolation
• Isolation from the group increase METH self-administration in flies
• Social interaction as positive reinforcer in the drug addiction
-1.25
-1.00
-0.75
-0.50
-0.25
0.00
0.25
0.50
0.75
1.00
1.25
Day1 Day2 Day3
prefrence
uL/day/fly
without isolation with 2 days of isolation
Importance of Study
• Detect variations in social activity across different strains and
treatments.
• Proven usefulness in detecting genetic, environmental and
substance influences.
• Gene expression (foraging gene)
• Isolation
• Psychostimulants
A simple computer vision pipeline reveals the effects of isolation on social interaction dynamics in
Drosophila
The Drosophila melanogaster foraging gene affects social networks
A network-based analysis detects cocaine-induced changes in social interactions in Drosophila melanogaster
Experimental setup
• Used wild-type flies of CantonS
background.
• Flies bred at 25°C and 70% humidity
under a 12h light/12h dark cycle.
• 30 adult male flies (3–5 days old).
• Two treatments, a total of 20 groups
• One treatment transferred to regular
molasses food (CTRL), and another with
0.50 mg/mL cocaine-hydrochloride (COC).
Data Collection
• Observation of social interactions in a circular arena.
• Video recordings processed to determine individual trajectories.
• Manual verification to ensure the accuracy of fly identities.
Tracking
Caltech FlyTracker
Social space and interaction criteria
Automated identification of social interaction criteria in Drosophila melanogaster
Social Interaction Networks
• Creation of directed social interaction networks.
• Representation of social relationships (count and duration).
• Temporal analysis capturing evolving social dynamics.
Data Processing Pipeline
• Transformation of trajectory data.
• Calculation of distances, facing angles, and interaction times.
• Network analysis on local, middle and global levels
Results
A network-based analysis detects cocaine-induced changes in social interactions in Drosophila melanogaster
Communities
CTRL: HIGH MODULARITY
• many links within and few links between
COC: LOW MODULARITY
• few links within and many links between
Fragile X
• Collaboration with prof. Dragana Protić and her team from Institute of Pharmacology, Clinical
Pharmacology and Toxicology; Faculty of Medicine, University of Belgrade, Serbia
https://polyfrax.com/
What
next?
Thank you!
• milan.petrovic@uniri.hr
• Github: milanXpetrovic
• Faculty of Informatics and Digital Technologies
• Laboratory for behavioral genetics
• Laboratory for semantic technologies (337)
In collaboration with Ana Meštrović, Ana Filošević Vujnović, Franka Rigo, Rozi Andretić
Waldowski, Bobana Samardžija, Marta Medija

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[DSC Europe 23] Milan Petrovic - Networks Cocaine and Fruit Flies

  • 1. Networks, Cocaine, and Fruit Flies: A Data-Driven Approach DSC Europe 2023 Milan Petrović
  • 2. About me PhD student specializing in complex networks Faculty of Informatics and Digital Technologies, University of Rijeka, Croatia Complex networks, data science, machine learning Interdisciplinary research Social interaction networks of fruit flies
  • 3. What is social interaction
  • 4. But why fruit flies? Life cycle ~ 10 days Genetic manipulation Similarity between humans and flies
  • 5. Influence of isolation • Isolation from the group increase METH self-administration in flies • Social interaction as positive reinforcer in the drug addiction -1.25 -1.00 -0.75 -0.50 -0.25 0.00 0.25 0.50 0.75 1.00 1.25 Day1 Day2 Day3 prefrence uL/day/fly without isolation with 2 days of isolation
  • 6. Importance of Study • Detect variations in social activity across different strains and treatments. • Proven usefulness in detecting genetic, environmental and substance influences. • Gene expression (foraging gene) • Isolation • Psychostimulants A simple computer vision pipeline reveals the effects of isolation on social interaction dynamics in Drosophila The Drosophila melanogaster foraging gene affects social networks A network-based analysis detects cocaine-induced changes in social interactions in Drosophila melanogaster
  • 7. Experimental setup • Used wild-type flies of CantonS background. • Flies bred at 25°C and 70% humidity under a 12h light/12h dark cycle. • 30 adult male flies (3–5 days old). • Two treatments, a total of 20 groups • One treatment transferred to regular molasses food (CTRL), and another with 0.50 mg/mL cocaine-hydrochloride (COC).
  • 8. Data Collection • Observation of social interactions in a circular arena. • Video recordings processed to determine individual trajectories. • Manual verification to ensure the accuracy of fly identities.
  • 10. Social space and interaction criteria Automated identification of social interaction criteria in Drosophila melanogaster
  • 11. Social Interaction Networks • Creation of directed social interaction networks. • Representation of social relationships (count and duration). • Temporal analysis capturing evolving social dynamics.
  • 12. Data Processing Pipeline • Transformation of trajectory data. • Calculation of distances, facing angles, and interaction times. • Network analysis on local, middle and global levels
  • 13. Results A network-based analysis detects cocaine-induced changes in social interactions in Drosophila melanogaster
  • 14. Communities CTRL: HIGH MODULARITY • many links within and few links between COC: LOW MODULARITY • few links within and many links between
  • 15. Fragile X • Collaboration with prof. Dragana Protić and her team from Institute of Pharmacology, Clinical Pharmacology and Toxicology; Faculty of Medicine, University of Belgrade, Serbia https://polyfrax.com/
  • 17. Thank you! • milan.petrovic@uniri.hr • Github: milanXpetrovic • Faculty of Informatics and Digital Technologies • Laboratory for behavioral genetics • Laboratory for semantic technologies (337) In collaboration with Ana Meštrović, Ana Filošević Vujnović, Franka Rigo, Rozi Andretić Waldowski, Bobana Samardžija, Marta Medija

Editor's Notes

  1. Social interaction refers to the ways in which people interact with each other, communicate, and behave in social situations. It encompasses a wide range of behaviors, from simple gestures like smiling or nodding to complex forms of communication like conversation and group dynamics. Social interaction is an essential aspect of human life and contributes to the development of social skills, emotional intelligence, and personal growth. Positive social interaction can lead to the formation of meaningful connections and promote mental and physical health. On the other hand, negative social interaction can lead to stress, conflict, and misunderstanding. In conclusion, social interaction is a fundamental aspect of human life that plays a critical role in our well-being and personal growth. By understanding the importance of social interaction, we can improve our social skills and build positive relationships with others
  2. Short life cycle: Drosophila melanogaster has a short life cycle, with a generation time of about 10 days, which makes it easy to study multiple generations in a short period of time. Small size: Fruit flies are small and easy to maintain in the laboratory, allowing researchers to keep large populations in small spaces. High reproductive rate: Fruit flies reproduce quickly and in large numbers, making it easy to generate a large number of offspring for experiments. Easy to manipulate genetically: Drosophila melanogaster is genetically tractable, meaning that it is easy to manipulate its genes to study their function. Large amount of genetic information available: Over the years, researchers have amassed a vast amount of genetic information about Drosophila melanogaster, making it easy to compare new findings with existing knowledge. Similarity to humans: Despite their small size, fruit flies share many similarities with humans in terms of their genetics and biology. Studying fruit flies can therefore provide insights into human biology and disease.