SlideShare a Scribd company logo
The Structure and Dynamics of Monatomic
Liquid Polymorphs - Case Studies of Cerium and
Germanium
Adam Cadien
Committee Members
Howard Sheng
Estela Blaisten-Barojas
Dimitrios Papaconstantopoulos
Amarda Shehu
School of Physics, Astronomy and Computational Science
George Mason University
Fairfax, Virginia 22030
acadien@gmu.edu
April 24, 2015
Preamble
Clarification
Atoms = Adams
Crystalline Polymorphism
Example: Carbon
, 1/42
Origins of Liquid Structure
Geometric Approach to the Structure of Liquids J. D. Bernal, 183 Nature (1959)
Coordination of Randomly Packed Spheres J. D. Bernal, 188 Nature (1960), 2/42
Polyamorphism
Y. Katayama, T. Mizutani, W. Utsumi, O. Shimomura, M. Yamakata and
K. Funakoshi; Nature, 403, 170 (2000)
A. Cadien, Q. Hu, Y. Meng, Y. Cheng, M. Chen, J. Shu, H. Mao, H.
Sheng, PRL, 110 2013, 3/42
A Rare Phenomenon?
Pure materials that exhibit liquid polymorphism.
, 4/42
Applications
, 5/42
Research Contribution
1. Discovered a new Liquid-Liquid Phase transtion in
Cerium.
Experimental findings confirmed through simulation.
2. Predicted the existence of the first monatomic liquid
critical point.
3. First Ab-Initio study of Liquid Germanium.
4. Found strong evidence of multiple liquid phases in
Germanium.
5. Achieved the first Nearly Hyperuniform glassy structure of
a semiconductor in Ab-Initio simulation.
, 6/42
Open Questions - Objectives for Studying Germanium
Glasses
How many unique amorphous structures does Germanium
form?
Is there unknown order in the glass structure?
Hyperuniformity?
How stable are these phases?
How do glasses form, how do they melt?
Liquids
Does Germanium have multiple liquid phases?
Under what conditions are they (meta)stable?
What are their unique properties?
What is the thermodynamic justification for polyamorphism?
Is multiple liquid phases linked to the glass transition?
, 7/42
Germanium
Germanium Phase Diagram
dP
dT
=
∆s
∆V
Negative Melt Curve
(dP/dT) at low pressures
Liquid and
Diamond(cF8) phase are
drastically different
materials
Is there a 2nd liquid that is similar to cF8?
S. Sastry, C. A. Angell, Nature Materials 2, pp739-743 (2003), 8/42
Simulation Method
Density Functional Theory (DFT); The trade off:
Ab initio is predictive without empirical data.
Scales horribly: roughly O(N3)
Simulation can access
short time scales
Model potentials can
be misleading
Sacrifice time for
accuracy
J. Glosli, F. Ree, PRL 82, 4659 (1999)
C. Wu, J. Glosli, G. Galli, F.Ree, PRL 89, 135701 (2002), 9/42
Structural Analysis
, 10/42
Structural Analysis
Coordination: Number of neighbors within rcut
ncn = 4πρ
rmin
0
rg(r)dr
Tetrahedral Order Parameter: Geometric property
Si
ang = 1 −
3
8
3
j=1
4
k=j+1
cos Ψjk +
1
3
2
Bond Orientation Parameter: Spherical Harmonics
Qi
l =
4π
2l + 1
l
m=−l
| ¯Qlm |
1
2
where, ¯Qlm =
1
Nb
Nb
j=1
Ylm(θ(rj ), φ(rj ))
, 11/42
Forming Amorphous Germanium
Quenching: Cool the material fast enough to avoid crystallization.
Canonical Dynamics (NVT), 288 atoms.
Takes ∼26 hours each across 256 cores.
, 12/42
Microstructure
24˚A3
/atom - Low Density
Amorphous (LDA)
Coordination = 4
Bond Order Q3 = 0.60
Tetrahedrality = 0.9
Bond Length = 2.51˚A
20˚A3
/atom - High Density
Amorphous (HDA)
Coordination = 6
Bond Order Q3 = 0.35
Tetrahedrality = 0.6
Bond Length = 2.72˚A
Tetrahedrons → Shorter Bonds & Fewer Neighbors → Lower Density
, 13/42
Quench Rate Dependence
How does the material respond to different cooling rates?
, 14/42
LDA Annealing
288 atoms, NVT.
Nearly Hyperuniform Network?, 15/42
Hyperuniform Structures: Ideal Glass?
Uniformity measured by structure factor1: S(Q → 0) =
N2
− N 2
N
1
J. Hansen and I. McDonald, “Theory of Simple Liquids”, 1986
S. Torquato and F. H. Stillinger, Physical Review E, 68, 041113 1-25 (2003)., 16/42
Structure Factor at Long Wavelengths
Approach Q → 0 from another dimension, R. Shape function:
α(r; R) = (1 − r/2R)2
(1 + r/4R)
S(Q → 0, R) = 1 +
∞
0
e−iqr
rG(r)α(r; R)dr
S. Torquato and F. Stillinger, PRE, 68, 041113 (2003)
A. de Graff and M. Thorpe, Acta Cryst, A66, pp22-31 (2010), 17/42
Hyperuniform Structures: Ideal Glass?
Uniformity measured by structure factor1: S(Q → 0) =
N2
− N 2
N
S(Q → 0) = 0 S(Q → 0)HULDA = 0.068 ± 0.009
S(Q → 0)WWW = 0.073 ± 0.010
1
J. Hansen and I. McDonald, “Theory of Simple Liquids”, 1986
S. Torquato and F. H. Stillinger, Physical Review E, 68, 041113 1-25 (2003)., 18/42
HDA - Hyperuniform LDA Transition
Mimic Experimental Compression
Each point - NVT
Relax each point
via CJ opt.
Shrink volume -
compression
Expand volume -
decompression
Test reversibility
0K Transition point.
, 19/42
HULDA Transition Pressure
Calculated transition at 6.4GPa. Agrees with experiment (6GPa)1.
1
O. Shimomura, S. Minomura, N. Sakai, K. Asaumi, K. Tamura, J. Fukushima,
and H. Endo. Philo. Mag., 29 pp547558 (1974), 20/42
Electronic Density of States
Histogram of band energies.
288 atom samples, 4x4x4 K-Points. E-Fermi is set to 0.0eV.
G. Kresse and J. Hafner, PRB, 47 pp558-561 (1993)
N. Bernstein and J. Mehl and D. Papaconstantopoulos, PRB, 66 075212 (2002), 21/42
Glasses Study Summary
Phase Coord. Bond Len. Symmetry Conduction
LDA ∼ 4 2.51˚A tetrahedral semimetal
HDA ∼ 6 2.72˚A octahedral metal
HDL 6-9 2.69˚A octahedral/random metal
Quenching HDL forms LDA somewhere near 650K at
24˚A3/atom
LDA becomes nearly hyperuniform through annealing or slow
quenching
Is the Low Density phase amorphous or liquid?
HDA is difficult to form and likely contains crystal fragments
LDA transition to HDA at 6GPa
, 22/42
Metastable Phase Diagram
D. Li and D. Herbach, J. Mater. Sci. 32 pp1437 (1997), 23/42
Accessing LDL
288 atom HULDA state, canonical (NVT) dynamics at fixed
temperature.
730K 770K
, 24/42
Structural Evolution 730K
, 25/42
Structural Evolution 770K
, 26/42
Dynamics - RMSD
RMSD = |ri (t) − ri (0)|2
, 27/42
Dynamics: RMSD
Ballistic
Single
Hop
Stationary
, 28/42
Hopping
Glass or Liquid?
, 29/42
van Hove Function
Gs(r, t) = 1
N i<N δ(r − ri(t) + ri(0))
The probability an atom has moved a distance r, in time t.
, 30/42
van Hove Function
Gs(r, t) = 1
N i<N δ(r − ri(t) + ri(0))
The probability an atom has moved a distance r, in time t.
, 31/42
van Hove Function
Gs(r, t) = 1
N i<N δ(r − ri(t) + ri(0))
The probability an atom has moved a distance r, in time t.
, 32/42
Intermediate Scattering Function
Fs(k, t) = Gs(r, t)e−ik·r
dr
Inaccurate at longer time
scales due to insufficient
data
Decay occurs near 50ns →
10 years of simulation
KWW Fit:
ISFs(t) = A ∗ e(−t
τ )
β
Fit the coefficients (A,β,τ)
W. Kob and H. Anderson, PRL, 73 1376 (1994), 33/42
Intermediate Scattering Function
770K LDL relax in
∼50ns
770K HDL relax
in ∼0.5ns
, 34/42
Dynamic Heterogeneity
a
a
L. Berthier PRL 99 060604 (2007)
Donati, Glotzer, Poole, Kob, Plimpton, PRE, 60 3107 (1999), 35/42
HDL A simple liquid
, 36/42
Potential Energy Landscape
Barrier between LDL & HDL at high temperatures.
No Barrier between HDL and LDA at low temperatures.
Large barriers between local minima in LDA.
, 37/42
Summary
Discovered that LDA tends towards
Hyperuniform structure
analyzed through long wavelength limit of S(Q).
First demonstration of liquid polymorphism in
pure Ge through Ab-Initio simulation.
Revealed the relaxation mechanism in LDL
using high fidelity ab-initio simulation
formation of defect droplet in LDA/LDL
A clear picture of the PEL of the amorphous
phases of Ge is developed.
, 38/42
Moving Forward
Open Questions:
Pressure minimum in the supercooled liquid?
Liquid-Liquid critical point or Void transition?
Spinodal transition?
Progression:
Challenge the Aptekar-Ponyatovsky 2 phase model
Case studies wtih DFT: Silicon, Gallium, Arsenic, Antimony
Extend case studies to multicomponent systems: Water, Silica
More experimental data to compare against, driven by
simulation.
, 39/42
Publications and Code
Publications
“Liquid Polyamorphism in Supercooled Germanium”, A.
Cadien & H. Sheng - in preparation
“Polymorphic phase transition mechanism of compressed
coesite”, Q.Y. Hu, J.-F. Shu, A. Cadien, Y. Meng, W.G.
Yang, H.W. Sheng, H.-K. Mao, Nat. Comm 6 6630 (2015)
“First-order liquid-liquid phase transition in Cerium”, A.
Cadien, QY Hu, Y Meng, YQ Cheng, MW Chen, JF Shu, HK
Mao, HW Sheng, PRL, 110 12 (2013)
“Highly optimized embedded-atom-method potentials for
fourteen fcc metals”, H. W. Sheng, M. J. Kramer, A. Cadien,
T. Fujita, M. W. Chen, PRB, 83 134118 (2011)
Code
All analysis code developed by Adam Cadien and available at;
https://github.com/acadien/matcalc, 40/42
Thank You!
Questions?
, 41/42
Yatta!
, 42/42

More Related Content

Similar to PhD Defense Slides

Particle and field based methods for complex fluids and soft materials
Particle and field based methods for complex fluids and soft materialsParticle and field based methods for complex fluids and soft materials
Particle and field based methods for complex fluids and soft materials
Amit Bhattacharjee
 
Nucleating Nematic Droplets
Nucleating Nematic DropletsNucleating Nematic Droplets
Nucleating Nematic Droplets
Amit Bhattacharjee
 
Oral presentation at Tsingtao 2015.7
Oral presentation at Tsingtao 2015.7Oral presentation at Tsingtao 2015.7
Oral presentation at Tsingtao 2015.7
Weixiang Sun
 
I0371048054
I0371048054I0371048054
I0371048054
theijes
 
Bk36372377
Bk36372377Bk36372377
Bk36372377
IJERA Editor
 
Seminar iitkgp
Seminar iitkgpSeminar iitkgp
Seminar iitkgp
Amit Bhattacharjee
 
Kinetic pathways to the isotropic-nematic phase transformation: a mean field ...
Kinetic pathways to the isotropic-nematic phase transformation: a mean field ...Kinetic pathways to the isotropic-nematic phase transformation: a mean field ...
Kinetic pathways to the isotropic-nematic phase transformation: a mean field ...
Amit Bhattacharjee
 
Electrochermical CO2 reduction reaction.pptx
Electrochermical CO2 reduction reaction.pptxElectrochermical CO2 reduction reaction.pptx
Electrochermical CO2 reduction reaction.pptx
Helmholtz-Zentrum Berlin für Materialien und Energie
 
Francisco Guinea-Recent advances in graphene research
Francisco Guinea-Recent advances in graphene researchFrancisco Guinea-Recent advances in graphene research
Francisco Guinea-Recent advances in graphene research
Fundación Ramón Areces
 
2018-11-26 Investigation of the band structure of quantum wells based on gapl...
2018-11-26 Investigation of the band structure of quantum wells based on gapl...2018-11-26 Investigation of the band structure of quantum wells based on gapl...
2018-11-26 Investigation of the band structure of quantum wells based on gapl...
LeonidBovkun
 
International Journal of Engineering and Science Invention (IJESI)
International Journal of Engineering and Science Invention (IJESI)International Journal of Engineering and Science Invention (IJESI)
International Journal of Engineering and Science Invention (IJESI)
inventionjournals
 
Starobinsky astana 2017
Starobinsky astana 2017Starobinsky astana 2017
Starobinsky astana 2017
Baurzhan Alzhanov
 
Accelerated Materials Discovery & Characterization with Classical, Quantum an...
Accelerated Materials Discovery & Characterization with Classical, Quantum an...Accelerated Materials Discovery & Characterization with Classical, Quantum an...
Accelerated Materials Discovery & Characterization with Classical, Quantum an...
KAMAL CHOUDHARY
 
N. Bilic - "Hamiltonian Method in the Braneworld" 3/3
N. Bilic - "Hamiltonian Method in the Braneworld" 3/3N. Bilic - "Hamiltonian Method in the Braneworld" 3/3
N. Bilic - "Hamiltonian Method in the Braneworld" 3/3
SEENET-MTP
 
Prof Tom Trainor (University of Washington, Seattle, USA)
Prof Tom Trainor (University of Washington, Seattle, USA)Prof Tom Trainor (University of Washington, Seattle, USA)
Prof Tom Trainor (University of Washington, Seattle, USA)
Rene Kotze
 
2015 Jusang Park
2015 Jusang Park2015 Jusang Park
2015 Jusang ParkJusang Park
 
Zvonimir Vlah "Lagrangian perturbation theory for large scale structure forma...
Zvonimir Vlah "Lagrangian perturbation theory for large scale structure forma...Zvonimir Vlah "Lagrangian perturbation theory for large scale structure forma...
Zvonimir Vlah "Lagrangian perturbation theory for large scale structure forma...
SEENET-MTP
 
Bianchi type i wet dark universe in bimetric relativity
Bianchi type i  wet  dark  universe in bimetric relativityBianchi type i  wet  dark  universe in bimetric relativity
Bianchi type i wet dark universe in bimetric relativity
Alexander Decker
 
MO4_T04_3_R_Sato.pptx
MO4_T04_3_R_Sato.pptxMO4_T04_3_R_Sato.pptx
MO4_T04_3_R_Sato.pptxgrssieee
 

Similar to PhD Defense Slides (20)

Particle and field based methods for complex fluids and soft materials
Particle and field based methods for complex fluids and soft materialsParticle and field based methods for complex fluids and soft materials
Particle and field based methods for complex fluids and soft materials
 
Nucleating Nematic Droplets
Nucleating Nematic DropletsNucleating Nematic Droplets
Nucleating Nematic Droplets
 
Oral presentation at Tsingtao 2015.7
Oral presentation at Tsingtao 2015.7Oral presentation at Tsingtao 2015.7
Oral presentation at Tsingtao 2015.7
 
I0371048054
I0371048054I0371048054
I0371048054
 
Bk36372377
Bk36372377Bk36372377
Bk36372377
 
Seminar iitkgp
Seminar iitkgpSeminar iitkgp
Seminar iitkgp
 
Kinetic pathways to the isotropic-nematic phase transformation: a mean field ...
Kinetic pathways to the isotropic-nematic phase transformation: a mean field ...Kinetic pathways to the isotropic-nematic phase transformation: a mean field ...
Kinetic pathways to the isotropic-nematic phase transformation: a mean field ...
 
Electrochermical CO2 reduction reaction.pptx
Electrochermical CO2 reduction reaction.pptxElectrochermical CO2 reduction reaction.pptx
Electrochermical CO2 reduction reaction.pptx
 
Francisco Guinea-Recent advances in graphene research
Francisco Guinea-Recent advances in graphene researchFrancisco Guinea-Recent advances in graphene research
Francisco Guinea-Recent advances in graphene research
 
2018-11-26 Investigation of the band structure of quantum wells based on gapl...
2018-11-26 Investigation of the band structure of quantum wells based on gapl...2018-11-26 Investigation of the band structure of quantum wells based on gapl...
2018-11-26 Investigation of the band structure of quantum wells based on gapl...
 
Global-13
Global-13Global-13
Global-13
 
International Journal of Engineering and Science Invention (IJESI)
International Journal of Engineering and Science Invention (IJESI)International Journal of Engineering and Science Invention (IJESI)
International Journal of Engineering and Science Invention (IJESI)
 
Starobinsky astana 2017
Starobinsky astana 2017Starobinsky astana 2017
Starobinsky astana 2017
 
Accelerated Materials Discovery & Characterization with Classical, Quantum an...
Accelerated Materials Discovery & Characterization with Classical, Quantum an...Accelerated Materials Discovery & Characterization with Classical, Quantum an...
Accelerated Materials Discovery & Characterization with Classical, Quantum an...
 
N. Bilic - "Hamiltonian Method in the Braneworld" 3/3
N. Bilic - "Hamiltonian Method in the Braneworld" 3/3N. Bilic - "Hamiltonian Method in the Braneworld" 3/3
N. Bilic - "Hamiltonian Method in the Braneworld" 3/3
 
Prof Tom Trainor (University of Washington, Seattle, USA)
Prof Tom Trainor (University of Washington, Seattle, USA)Prof Tom Trainor (University of Washington, Seattle, USA)
Prof Tom Trainor (University of Washington, Seattle, USA)
 
2015 Jusang Park
2015 Jusang Park2015 Jusang Park
2015 Jusang Park
 
Zvonimir Vlah "Lagrangian perturbation theory for large scale structure forma...
Zvonimir Vlah "Lagrangian perturbation theory for large scale structure forma...Zvonimir Vlah "Lagrangian perturbation theory for large scale structure forma...
Zvonimir Vlah "Lagrangian perturbation theory for large scale structure forma...
 
Bianchi type i wet dark universe in bimetric relativity
Bianchi type i  wet  dark  universe in bimetric relativityBianchi type i  wet  dark  universe in bimetric relativity
Bianchi type i wet dark universe in bimetric relativity
 
MO4_T04_3_R_Sato.pptx
MO4_T04_3_R_Sato.pptxMO4_T04_3_R_Sato.pptx
MO4_T04_3_R_Sato.pptx
 

Recently uploaded

BLOOD AND BLOOD COMPONENT- introduction to blood physiology
BLOOD AND BLOOD COMPONENT- introduction to blood physiologyBLOOD AND BLOOD COMPONENT- introduction to blood physiology
BLOOD AND BLOOD COMPONENT- introduction to blood physiology
NoelManyise1
 
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...
Sérgio Sacani
 
role of pramana in research.pptx in science
role of pramana in research.pptx in sciencerole of pramana in research.pptx in science
role of pramana in research.pptx in science
sonaliswain16
 
Leaf Initiation, Growth and Differentiation.pdf
Leaf Initiation, Growth and Differentiation.pdfLeaf Initiation, Growth and Differentiation.pdf
Leaf Initiation, Growth and Differentiation.pdf
RenuJangid3
 
3D Hybrid PIC simulation of the plasma expansion (ISSS-14)
3D Hybrid PIC simulation of the plasma expansion (ISSS-14)3D Hybrid PIC simulation of the plasma expansion (ISSS-14)
3D Hybrid PIC simulation of the plasma expansion (ISSS-14)
David Osipyan
 
bordetella pertussis.................................ppt
bordetella pertussis.................................pptbordetella pertussis.................................ppt
bordetella pertussis.................................ppt
kejapriya1
 
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...
University of Maribor
 
Seminar of U.V. Spectroscopy by SAMIR PANDA
 Seminar of U.V. Spectroscopy by SAMIR PANDA Seminar of U.V. Spectroscopy by SAMIR PANDA
Seminar of U.V. Spectroscopy by SAMIR PANDA
SAMIR PANDA
 
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...
Sérgio Sacani
 
Lateral Ventricles.pdf very easy good diagrams comprehensive
Lateral Ventricles.pdf very easy good diagrams comprehensiveLateral Ventricles.pdf very easy good diagrams comprehensive
Lateral Ventricles.pdf very easy good diagrams comprehensive
silvermistyshot
 
Salas, V. (2024) "John of St. Thomas (Poinsot) on the Science of Sacred Theol...
Salas, V. (2024) "John of St. Thomas (Poinsot) on the Science of Sacred Theol...Salas, V. (2024) "John of St. Thomas (Poinsot) on the Science of Sacred Theol...
Salas, V. (2024) "John of St. Thomas (Poinsot) on the Science of Sacred Theol...
Studia Poinsotiana
 
PRESENTATION ABOUT PRINCIPLE OF COSMATIC EVALUATION
PRESENTATION ABOUT PRINCIPLE OF COSMATIC EVALUATIONPRESENTATION ABOUT PRINCIPLE OF COSMATIC EVALUATION
PRESENTATION ABOUT PRINCIPLE OF COSMATIC EVALUATION
ChetanK57
 
Mudde & Rovira Kaltwasser. - Populism - a very short introduction [2017].pdf
Mudde & Rovira Kaltwasser. - Populism - a very short introduction [2017].pdfMudde & Rovira Kaltwasser. - Populism - a very short introduction [2017].pdf
Mudde & Rovira Kaltwasser. - Populism - a very short introduction [2017].pdf
frank0071
 
general properties of oerganologametal.ppt
general properties of oerganologametal.pptgeneral properties of oerganologametal.ppt
general properties of oerganologametal.ppt
IqrimaNabilatulhusni
 
Introduction to Mean Field Theory(MFT).pptx
Introduction to Mean Field Theory(MFT).pptxIntroduction to Mean Field Theory(MFT).pptx
Introduction to Mean Field Theory(MFT).pptx
zeex60
 
Phenomics assisted breeding in crop improvement
Phenomics assisted breeding in crop improvementPhenomics assisted breeding in crop improvement
Phenomics assisted breeding in crop improvement
IshaGoswami9
 
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...
University of Maribor
 
如何办理(uvic毕业证书)维多利亚大学毕业证本科学位证书原版一模一样
如何办理(uvic毕业证书)维多利亚大学毕业证本科学位证书原版一模一样如何办理(uvic毕业证书)维多利亚大学毕业证本科学位证书原版一模一样
如何办理(uvic毕业证书)维多利亚大学毕业证本科学位证书原版一模一样
yqqaatn0
 
nodule formation by alisha dewangan.pptx
nodule formation by alisha dewangan.pptxnodule formation by alisha dewangan.pptx
nodule formation by alisha dewangan.pptx
alishadewangan1
 
Hemostasis_importance& clinical significance.pptx
Hemostasis_importance& clinical significance.pptxHemostasis_importance& clinical significance.pptx
Hemostasis_importance& clinical significance.pptx
muralinath2
 

Recently uploaded (20)

BLOOD AND BLOOD COMPONENT- introduction to blood physiology
BLOOD AND BLOOD COMPONENT- introduction to blood physiologyBLOOD AND BLOOD COMPONENT- introduction to blood physiology
BLOOD AND BLOOD COMPONENT- introduction to blood physiology
 
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...
Observation of Io’s Resurfacing via Plume Deposition Using Ground-based Adapt...
 
role of pramana in research.pptx in science
role of pramana in research.pptx in sciencerole of pramana in research.pptx in science
role of pramana in research.pptx in science
 
Leaf Initiation, Growth and Differentiation.pdf
Leaf Initiation, Growth and Differentiation.pdfLeaf Initiation, Growth and Differentiation.pdf
Leaf Initiation, Growth and Differentiation.pdf
 
3D Hybrid PIC simulation of the plasma expansion (ISSS-14)
3D Hybrid PIC simulation of the plasma expansion (ISSS-14)3D Hybrid PIC simulation of the plasma expansion (ISSS-14)
3D Hybrid PIC simulation of the plasma expansion (ISSS-14)
 
bordetella pertussis.................................ppt
bordetella pertussis.................................pptbordetella pertussis.................................ppt
bordetella pertussis.................................ppt
 
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...
Comparing Evolved Extractive Text Summary Scores of Bidirectional Encoder Rep...
 
Seminar of U.V. Spectroscopy by SAMIR PANDA
 Seminar of U.V. Spectroscopy by SAMIR PANDA Seminar of U.V. Spectroscopy by SAMIR PANDA
Seminar of U.V. Spectroscopy by SAMIR PANDA
 
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...
Earliest Galaxies in the JADES Origins Field: Luminosity Function and Cosmic ...
 
Lateral Ventricles.pdf very easy good diagrams comprehensive
Lateral Ventricles.pdf very easy good diagrams comprehensiveLateral Ventricles.pdf very easy good diagrams comprehensive
Lateral Ventricles.pdf very easy good diagrams comprehensive
 
Salas, V. (2024) "John of St. Thomas (Poinsot) on the Science of Sacred Theol...
Salas, V. (2024) "John of St. Thomas (Poinsot) on the Science of Sacred Theol...Salas, V. (2024) "John of St. Thomas (Poinsot) on the Science of Sacred Theol...
Salas, V. (2024) "John of St. Thomas (Poinsot) on the Science of Sacred Theol...
 
PRESENTATION ABOUT PRINCIPLE OF COSMATIC EVALUATION
PRESENTATION ABOUT PRINCIPLE OF COSMATIC EVALUATIONPRESENTATION ABOUT PRINCIPLE OF COSMATIC EVALUATION
PRESENTATION ABOUT PRINCIPLE OF COSMATIC EVALUATION
 
Mudde & Rovira Kaltwasser. - Populism - a very short introduction [2017].pdf
Mudde & Rovira Kaltwasser. - Populism - a very short introduction [2017].pdfMudde & Rovira Kaltwasser. - Populism - a very short introduction [2017].pdf
Mudde & Rovira Kaltwasser. - Populism - a very short introduction [2017].pdf
 
general properties of oerganologametal.ppt
general properties of oerganologametal.pptgeneral properties of oerganologametal.ppt
general properties of oerganologametal.ppt
 
Introduction to Mean Field Theory(MFT).pptx
Introduction to Mean Field Theory(MFT).pptxIntroduction to Mean Field Theory(MFT).pptx
Introduction to Mean Field Theory(MFT).pptx
 
Phenomics assisted breeding in crop improvement
Phenomics assisted breeding in crop improvementPhenomics assisted breeding in crop improvement
Phenomics assisted breeding in crop improvement
 
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...
Remote Sensing and Computational, Evolutionary, Supercomputing, and Intellige...
 
如何办理(uvic毕业证书)维多利亚大学毕业证本科学位证书原版一模一样
如何办理(uvic毕业证书)维多利亚大学毕业证本科学位证书原版一模一样如何办理(uvic毕业证书)维多利亚大学毕业证本科学位证书原版一模一样
如何办理(uvic毕业证书)维多利亚大学毕业证本科学位证书原版一模一样
 
nodule formation by alisha dewangan.pptx
nodule formation by alisha dewangan.pptxnodule formation by alisha dewangan.pptx
nodule formation by alisha dewangan.pptx
 
Hemostasis_importance& clinical significance.pptx
Hemostasis_importance& clinical significance.pptxHemostasis_importance& clinical significance.pptx
Hemostasis_importance& clinical significance.pptx
 

PhD Defense Slides

  • 1. The Structure and Dynamics of Monatomic Liquid Polymorphs - Case Studies of Cerium and Germanium Adam Cadien Committee Members Howard Sheng Estela Blaisten-Barojas Dimitrios Papaconstantopoulos Amarda Shehu School of Physics, Astronomy and Computational Science George Mason University Fairfax, Virginia 22030 acadien@gmu.edu April 24, 2015
  • 5. Origins of Liquid Structure Geometric Approach to the Structure of Liquids J. D. Bernal, 183 Nature (1959) Coordination of Randomly Packed Spheres J. D. Bernal, 188 Nature (1960), 2/42
  • 6. Polyamorphism Y. Katayama, T. Mizutani, W. Utsumi, O. Shimomura, M. Yamakata and K. Funakoshi; Nature, 403, 170 (2000) A. Cadien, Q. Hu, Y. Meng, Y. Cheng, M. Chen, J. Shu, H. Mao, H. Sheng, PRL, 110 2013, 3/42
  • 7. A Rare Phenomenon? Pure materials that exhibit liquid polymorphism. , 4/42
  • 9. Research Contribution 1. Discovered a new Liquid-Liquid Phase transtion in Cerium. Experimental findings confirmed through simulation. 2. Predicted the existence of the first monatomic liquid critical point. 3. First Ab-Initio study of Liquid Germanium. 4. Found strong evidence of multiple liquid phases in Germanium. 5. Achieved the first Nearly Hyperuniform glassy structure of a semiconductor in Ab-Initio simulation. , 6/42
  • 10. Open Questions - Objectives for Studying Germanium Glasses How many unique amorphous structures does Germanium form? Is there unknown order in the glass structure? Hyperuniformity? How stable are these phases? How do glasses form, how do they melt? Liquids Does Germanium have multiple liquid phases? Under what conditions are they (meta)stable? What are their unique properties? What is the thermodynamic justification for polyamorphism? Is multiple liquid phases linked to the glass transition? , 7/42
  • 11. Germanium Germanium Phase Diagram dP dT = ∆s ∆V Negative Melt Curve (dP/dT) at low pressures Liquid and Diamond(cF8) phase are drastically different materials Is there a 2nd liquid that is similar to cF8? S. Sastry, C. A. Angell, Nature Materials 2, pp739-743 (2003), 8/42
  • 12. Simulation Method Density Functional Theory (DFT); The trade off: Ab initio is predictive without empirical data. Scales horribly: roughly O(N3) Simulation can access short time scales Model potentials can be misleading Sacrifice time for accuracy J. Glosli, F. Ree, PRL 82, 4659 (1999) C. Wu, J. Glosli, G. Galli, F.Ree, PRL 89, 135701 (2002), 9/42
  • 14. Structural Analysis Coordination: Number of neighbors within rcut ncn = 4πρ rmin 0 rg(r)dr Tetrahedral Order Parameter: Geometric property Si ang = 1 − 3 8 3 j=1 4 k=j+1 cos Ψjk + 1 3 2 Bond Orientation Parameter: Spherical Harmonics Qi l = 4π 2l + 1 l m=−l | ¯Qlm | 1 2 where, ¯Qlm = 1 Nb Nb j=1 Ylm(θ(rj ), φ(rj )) , 11/42
  • 15. Forming Amorphous Germanium Quenching: Cool the material fast enough to avoid crystallization. Canonical Dynamics (NVT), 288 atoms. Takes ∼26 hours each across 256 cores. , 12/42
  • 16. Microstructure 24˚A3 /atom - Low Density Amorphous (LDA) Coordination = 4 Bond Order Q3 = 0.60 Tetrahedrality = 0.9 Bond Length = 2.51˚A 20˚A3 /atom - High Density Amorphous (HDA) Coordination = 6 Bond Order Q3 = 0.35 Tetrahedrality = 0.6 Bond Length = 2.72˚A Tetrahedrons → Shorter Bonds & Fewer Neighbors → Lower Density , 13/42
  • 17. Quench Rate Dependence How does the material respond to different cooling rates? , 14/42
  • 18. LDA Annealing 288 atoms, NVT. Nearly Hyperuniform Network?, 15/42
  • 19. Hyperuniform Structures: Ideal Glass? Uniformity measured by structure factor1: S(Q → 0) = N2 − N 2 N 1 J. Hansen and I. McDonald, “Theory of Simple Liquids”, 1986 S. Torquato and F. H. Stillinger, Physical Review E, 68, 041113 1-25 (2003)., 16/42
  • 20. Structure Factor at Long Wavelengths Approach Q → 0 from another dimension, R. Shape function: α(r; R) = (1 − r/2R)2 (1 + r/4R) S(Q → 0, R) = 1 + ∞ 0 e−iqr rG(r)α(r; R)dr S. Torquato and F. Stillinger, PRE, 68, 041113 (2003) A. de Graff and M. Thorpe, Acta Cryst, A66, pp22-31 (2010), 17/42
  • 21. Hyperuniform Structures: Ideal Glass? Uniformity measured by structure factor1: S(Q → 0) = N2 − N 2 N S(Q → 0) = 0 S(Q → 0)HULDA = 0.068 ± 0.009 S(Q → 0)WWW = 0.073 ± 0.010 1 J. Hansen and I. McDonald, “Theory of Simple Liquids”, 1986 S. Torquato and F. H. Stillinger, Physical Review E, 68, 041113 1-25 (2003)., 18/42
  • 22. HDA - Hyperuniform LDA Transition Mimic Experimental Compression Each point - NVT Relax each point via CJ opt. Shrink volume - compression Expand volume - decompression Test reversibility 0K Transition point. , 19/42
  • 23. HULDA Transition Pressure Calculated transition at 6.4GPa. Agrees with experiment (6GPa)1. 1 O. Shimomura, S. Minomura, N. Sakai, K. Asaumi, K. Tamura, J. Fukushima, and H. Endo. Philo. Mag., 29 pp547558 (1974), 20/42
  • 24. Electronic Density of States Histogram of band energies. 288 atom samples, 4x4x4 K-Points. E-Fermi is set to 0.0eV. G. Kresse and J. Hafner, PRB, 47 pp558-561 (1993) N. Bernstein and J. Mehl and D. Papaconstantopoulos, PRB, 66 075212 (2002), 21/42
  • 25. Glasses Study Summary Phase Coord. Bond Len. Symmetry Conduction LDA ∼ 4 2.51˚A tetrahedral semimetal HDA ∼ 6 2.72˚A octahedral metal HDL 6-9 2.69˚A octahedral/random metal Quenching HDL forms LDA somewhere near 650K at 24˚A3/atom LDA becomes nearly hyperuniform through annealing or slow quenching Is the Low Density phase amorphous or liquid? HDA is difficult to form and likely contains crystal fragments LDA transition to HDA at 6GPa , 22/42
  • 26. Metastable Phase Diagram D. Li and D. Herbach, J. Mater. Sci. 32 pp1437 (1997), 23/42
  • 27. Accessing LDL 288 atom HULDA state, canonical (NVT) dynamics at fixed temperature. 730K 770K , 24/42
  • 30. Dynamics - RMSD RMSD = |ri (t) − ri (0)|2 , 27/42
  • 33. van Hove Function Gs(r, t) = 1 N i<N δ(r − ri(t) + ri(0)) The probability an atom has moved a distance r, in time t. , 30/42
  • 34. van Hove Function Gs(r, t) = 1 N i<N δ(r − ri(t) + ri(0)) The probability an atom has moved a distance r, in time t. , 31/42
  • 35. van Hove Function Gs(r, t) = 1 N i<N δ(r − ri(t) + ri(0)) The probability an atom has moved a distance r, in time t. , 32/42
  • 36. Intermediate Scattering Function Fs(k, t) = Gs(r, t)e−ik·r dr Inaccurate at longer time scales due to insufficient data Decay occurs near 50ns → 10 years of simulation KWW Fit: ISFs(t) = A ∗ e(−t τ ) β Fit the coefficients (A,β,τ) W. Kob and H. Anderson, PRL, 73 1376 (1994), 33/42
  • 37. Intermediate Scattering Function 770K LDL relax in ∼50ns 770K HDL relax in ∼0.5ns , 34/42
  • 38. Dynamic Heterogeneity a a L. Berthier PRL 99 060604 (2007) Donati, Glotzer, Poole, Kob, Plimpton, PRE, 60 3107 (1999), 35/42
  • 39. HDL A simple liquid , 36/42
  • 40. Potential Energy Landscape Barrier between LDL & HDL at high temperatures. No Barrier between HDL and LDA at low temperatures. Large barriers between local minima in LDA. , 37/42
  • 41. Summary Discovered that LDA tends towards Hyperuniform structure analyzed through long wavelength limit of S(Q). First demonstration of liquid polymorphism in pure Ge through Ab-Initio simulation. Revealed the relaxation mechanism in LDL using high fidelity ab-initio simulation formation of defect droplet in LDA/LDL A clear picture of the PEL of the amorphous phases of Ge is developed. , 38/42
  • 42. Moving Forward Open Questions: Pressure minimum in the supercooled liquid? Liquid-Liquid critical point or Void transition? Spinodal transition? Progression: Challenge the Aptekar-Ponyatovsky 2 phase model Case studies wtih DFT: Silicon, Gallium, Arsenic, Antimony Extend case studies to multicomponent systems: Water, Silica More experimental data to compare against, driven by simulation. , 39/42
  • 43. Publications and Code Publications “Liquid Polyamorphism in Supercooled Germanium”, A. Cadien & H. Sheng - in preparation “Polymorphic phase transition mechanism of compressed coesite”, Q.Y. Hu, J.-F. Shu, A. Cadien, Y. Meng, W.G. Yang, H.W. Sheng, H.-K. Mao, Nat. Comm 6 6630 (2015) “First-order liquid-liquid phase transition in Cerium”, A. Cadien, QY Hu, Y Meng, YQ Cheng, MW Chen, JF Shu, HK Mao, HW Sheng, PRL, 110 12 (2013) “Highly optimized embedded-atom-method potentials for fourteen fcc metals”, H. W. Sheng, M. J. Kramer, A. Cadien, T. Fujita, M. W. Chen, PRB, 83 134118 (2011) Code All analysis code developed by Adam Cadien and available at; https://github.com/acadien/matcalc, 40/42