From data portal to knowledge portal: Leveraging semantic technologies to sup...Xiaogang (Marshall) Ma
Scientific research practices regularly adopt new technologies and platforms in an effort to increase information timeliness, sharing and discoverability. There are many initiatives related to open data, open code, open access, open collections, composing the topic of Open Science in academia. Being open has two levels of meanings. The first is to make the data, code, sample collections and publications, etc. freely accessible online. The other is the annotation and connection between those resources to establish the provenance information for reproducible scientific research. In this paper we present our work on a web portal for the Deep Carbon Observatory (DCO) community. The DCO is a 10-year (2009-2019) initiative to intensify global attention and scientific effort in the burgeoning field of deep carbon science. Inspired by guiding questions such as “how much carbon does Earth contain?”, “where is it?” and “what can deep carbon tell us about origins?” more than 1000 scientists across the world are actively participating in the DCO community. The DCO web portal is a research collaboration website developed to keep track of all researchers, organizations, instruments, field sites, and research outputs related to the DCO community. We intend for the DCO web portal to be a knowledge portal - adopting state-of-the-art semantic technologies to support various stages of the scientific process within and beyond the DCO community.
Providing Research Graph data in JSON-LD using Schema.orgJingbo Wang
In this presentation, we describe a pilot project that provides
Research Graph records to external web services using
JSON-LD. The Research Graph database contains a largescale
graph that links research datasets (i.e., data used to
support research) to funding records (i.e. grants), publications
and researcher records such as ORCID profiles.
This database was derived from the work of the Research
Data Alliance Working Group on Data Description Registry
Interoperability (DDRI), and curated using the Research
Data Switchboard open source software. By being available
in Linked Data format, the Research Graph database
is more accessible to third-party web services over the Internet,
which thus opens the opportunity to connect to the
rest of the world in the semantic format.
The primary purpose of this pilot project is to evaluate the
feasibility of converting registry objects in Research Graph
to JSON-LD by accessing widely used vocabularies published
at Schema.org. In this paper, we provide examples
of publications, datasets and grants from international research
institutions such as CERN INSPIREHEP, National
Computational Infrastructure (NCI) in Australia, and Australian
Research Council (ARC). Furthermore, we show how
these Research Graph records are made semantically available
as Linked Data through using Schema.org. The mapping
between Research Graph schema and Schema.org is
available on GitHub repository. We also discuss the potential need for an extension to Schema.org vocabulary for scholarly communication.
From data portal to knowledge portal: Leveraging semantic technologies to sup...Xiaogang (Marshall) Ma
Scientific research practices regularly adopt new technologies and platforms in an effort to increase information timeliness, sharing and discoverability. There are many initiatives related to open data, open code, open access, open collections, composing the topic of Open Science in academia. Being open has two levels of meanings. The first is to make the data, code, sample collections and publications, etc. freely accessible online. The other is the annotation and connection between those resources to establish the provenance information for reproducible scientific research. In this paper we present our work on a web portal for the Deep Carbon Observatory (DCO) community. The DCO is a 10-year (2009-2019) initiative to intensify global attention and scientific effort in the burgeoning field of deep carbon science. Inspired by guiding questions such as “how much carbon does Earth contain?”, “where is it?” and “what can deep carbon tell us about origins?” more than 1000 scientists across the world are actively participating in the DCO community. The DCO web portal is a research collaboration website developed to keep track of all researchers, organizations, instruments, field sites, and research outputs related to the DCO community. We intend for the DCO web portal to be a knowledge portal - adopting state-of-the-art semantic technologies to support various stages of the scientific process within and beyond the DCO community.
Providing Research Graph data in JSON-LD using Schema.orgJingbo Wang
In this presentation, we describe a pilot project that provides
Research Graph records to external web services using
JSON-LD. The Research Graph database contains a largescale
graph that links research datasets (i.e., data used to
support research) to funding records (i.e. grants), publications
and researcher records such as ORCID profiles.
This database was derived from the work of the Research
Data Alliance Working Group on Data Description Registry
Interoperability (DDRI), and curated using the Research
Data Switchboard open source software. By being available
in Linked Data format, the Research Graph database
is more accessible to third-party web services over the Internet,
which thus opens the opportunity to connect to the
rest of the world in the semantic format.
The primary purpose of this pilot project is to evaluate the
feasibility of converting registry objects in Research Graph
to JSON-LD by accessing widely used vocabularies published
at Schema.org. In this paper, we provide examples
of publications, datasets and grants from international research
institutions such as CERN INSPIREHEP, National
Computational Infrastructure (NCI) in Australia, and Australian
Research Council (ARC). Furthermore, we show how
these Research Graph records are made semantically available
as Linked Data through using Schema.org. The mapping
between Research Graph schema and Schema.org is
available on GitHub repository. We also discuss the potential need for an extension to Schema.org vocabulary for scholarly communication.
Clipper project presentation at the Jisc Research Data Network meeting, Cambridge, 6th September 2016.
Clipper: A web annotation toolkit for research & practice with online audio visual media
Developing literacies of open: across an institution and beyondStuart Nicol
ALT-C presentation, 8th September 2016 by Stuart Nicol
This presentation discusses a number of related initiatives at the University of Edinburgh in the context of supporting communities within the institution to acclimatise to the changing 'semiotic landscape' and shifting 'materiality of literacy' brought about by the technologies and policies of open education.
https://altc.alt.ac.uk/2016/sessions/developing-literacies-of-open-across-an-institution-and-beyond-1424/
Showcasing research data tools - Jisc Digifest 2016Jisc
In this session the research data spring project teams will demonstrate the innovative new prototypes and tools they have been working on over the past nine months. The tools have been created by teams within universities and with a range of other partners.
Examples are tools that annotate and clip media files; DataVault that manages active research data; ‘Giving researchers credit’ that helps authors publish a data paper; DMA Online which is a reporting and analytics tool for research data administration; and Artivity which logs all of the artist's interaction with the digital world.
Information technology and resources are an integral and indispensable part of the contemporary academic enterprise. In particular, technological advances have nurtured a new paradigm of data-intensive research. However, far too much of this activity still takes place in silos, to the detriment of open scholarly inquiry, integrity, and advancement. To counteract this tendency, the University of California Curation Center (UC3) has been developing and deploying a comprehensive suite of curation services that facilitate widespread data management, preservation, publication, sharing, and reuse. Through these services UC3 is engaging with new communities of use: in addition to its traditional stakeholders in cultural heritage memory organizations, e.g., libraries, museums, and archives, the UC3 service suite is now attracting significant adoption by research projects, laboratories, and individual faculty researchers. This webinar will present an introduction to five specific services – DMPTool, DataUp, EZID, Merritt, Web Archiving Service (WAS) – applicable to data curation throughout the scholarly lifecycle, two recent initiatives in collaboration with UC campuses, UC Berkeley Research Hub and UC San Francisco DataShare, and the ways in which they encourage and promote new communities of practice and greater transparency in scholarly research.
EarthCube Monthly Community Webinar- Nov. 22, 2013EarthCube
This webinar features project overviews of all EarthCube Awards (Building Blocks, Research Coordination Networks, Conceptual Designs, and Test Governance), followed by a call for involvement, and a Q&A session.
Agenda:
EarthCube Awards – Project Overviews
1.. EarthCube Web Services (Building Block)
2. EC3: Earth-Centered Community for Cyberinfrastructure (RCN)
3. GeoSoft (Building Block)
4. Specifying and Implementing ODSIP (Building Block)
5. A Broker Framework for Next Generation Geoscience (BCube) (Building Block)
6. Integrating Discrete and Continuous Data (Building Block)
7. EAGER: Collaborative Research (Building Block)
8. A Cognitive Computer Infrastructure for Geoscience (Building Block)
9. Earth System Bridge (Building Block)
10. CINERGI – Community Inventory of EC Resources for Geoscience Interoperability (BB)
11. Building a Sediment Experimentalist Network (RCN)
12. C4P: Collaboration and Cyberinfrastructure for Paleogeosciences (RCN)
13. Developing a Data-Oriented Human-centric Enterprise for Architecture (CD)
14. Enterprise Architecture for Transformative Research and Collaboration (CD)
15. EC Test Enterprise Governance: An Agile Approach (Test Governance)
A Call for Involvement!
Stronger together: community initiatives in journal managementJisc
There has been a recent growth of initiatives to address common problems regarding current and long-term access to e-journal content. Jisc is at the forefront of many of these with the close participation and active input of educational institutions.
This session aims to summarise the current state of key themes with pointers to future directions of areas such as sustainability, the move towards e-only environments, and shared consortia approaches. It will provide an overview and panel discussion on developing the supporting infrastructure to meet the needs of users. The discussion will focus on how institutions, community bodies and service providers can best work together to ensure sustainable, long-term initiatives by seeking to introduce uniformity, standardisation and collaboration to an even greater extent.
The session will introduce two new Jisc-supported projects in this area, the Keepers Registry Extra and SafeNet initiatives, and discuss how these fit alongside existing Jisc services such as Knowledge Base+, UK LOCKSS Alliance, Journal Archives and JUSP (Journal Usage Statistics Portal). The panel will address how this catalogue of services contributes towards a coherent strategy in the management of e-journal content.
Delivered by Peter Burnhill at Text Mining for Scholarly Communications and Repositories Joint Workshop, Manchester Interdisciplinary Biocentre, University of Manchester, 28-29 October 2009
Digital Heritage 2015: International TAG CLOUD Project Workshop
Presentation by Holly Wright, Archaeology Data Service, United Kingdom\
Granada, Spain
29 September 2015
Discussing the Scottish Information environment and ways to open access within social networking platforms, by K. Menzies, CDLR, given at Metadata issues and Web 2.0 services CIGS seminar, Fri 30 Jan, 2009.
http://scone.strath.ac.uk/scie/index.cfm
Clipper project presentation at the Jisc Research Data Network meeting, Cambridge, 6th September 2016.
Clipper: A web annotation toolkit for research & practice with online audio visual media
Developing literacies of open: across an institution and beyondStuart Nicol
ALT-C presentation, 8th September 2016 by Stuart Nicol
This presentation discusses a number of related initiatives at the University of Edinburgh in the context of supporting communities within the institution to acclimatise to the changing 'semiotic landscape' and shifting 'materiality of literacy' brought about by the technologies and policies of open education.
https://altc.alt.ac.uk/2016/sessions/developing-literacies-of-open-across-an-institution-and-beyond-1424/
Showcasing research data tools - Jisc Digifest 2016Jisc
In this session the research data spring project teams will demonstrate the innovative new prototypes and tools they have been working on over the past nine months. The tools have been created by teams within universities and with a range of other partners.
Examples are tools that annotate and clip media files; DataVault that manages active research data; ‘Giving researchers credit’ that helps authors publish a data paper; DMA Online which is a reporting and analytics tool for research data administration; and Artivity which logs all of the artist's interaction with the digital world.
Information technology and resources are an integral and indispensable part of the contemporary academic enterprise. In particular, technological advances have nurtured a new paradigm of data-intensive research. However, far too much of this activity still takes place in silos, to the detriment of open scholarly inquiry, integrity, and advancement. To counteract this tendency, the University of California Curation Center (UC3) has been developing and deploying a comprehensive suite of curation services that facilitate widespread data management, preservation, publication, sharing, and reuse. Through these services UC3 is engaging with new communities of use: in addition to its traditional stakeholders in cultural heritage memory organizations, e.g., libraries, museums, and archives, the UC3 service suite is now attracting significant adoption by research projects, laboratories, and individual faculty researchers. This webinar will present an introduction to five specific services – DMPTool, DataUp, EZID, Merritt, Web Archiving Service (WAS) – applicable to data curation throughout the scholarly lifecycle, two recent initiatives in collaboration with UC campuses, UC Berkeley Research Hub and UC San Francisco DataShare, and the ways in which they encourage and promote new communities of practice and greater transparency in scholarly research.
EarthCube Monthly Community Webinar- Nov. 22, 2013EarthCube
This webinar features project overviews of all EarthCube Awards (Building Blocks, Research Coordination Networks, Conceptual Designs, and Test Governance), followed by a call for involvement, and a Q&A session.
Agenda:
EarthCube Awards – Project Overviews
1.. EarthCube Web Services (Building Block)
2. EC3: Earth-Centered Community for Cyberinfrastructure (RCN)
3. GeoSoft (Building Block)
4. Specifying and Implementing ODSIP (Building Block)
5. A Broker Framework for Next Generation Geoscience (BCube) (Building Block)
6. Integrating Discrete and Continuous Data (Building Block)
7. EAGER: Collaborative Research (Building Block)
8. A Cognitive Computer Infrastructure for Geoscience (Building Block)
9. Earth System Bridge (Building Block)
10. CINERGI – Community Inventory of EC Resources for Geoscience Interoperability (BB)
11. Building a Sediment Experimentalist Network (RCN)
12. C4P: Collaboration and Cyberinfrastructure for Paleogeosciences (RCN)
13. Developing a Data-Oriented Human-centric Enterprise for Architecture (CD)
14. Enterprise Architecture for Transformative Research and Collaboration (CD)
15. EC Test Enterprise Governance: An Agile Approach (Test Governance)
A Call for Involvement!
Stronger together: community initiatives in journal managementJisc
There has been a recent growth of initiatives to address common problems regarding current and long-term access to e-journal content. Jisc is at the forefront of many of these with the close participation and active input of educational institutions.
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The session will introduce two new Jisc-supported projects in this area, the Keepers Registry Extra and SafeNet initiatives, and discuss how these fit alongside existing Jisc services such as Knowledge Base+, UK LOCKSS Alliance, Journal Archives and JUSP (Journal Usage Statistics Portal). The panel will address how this catalogue of services contributes towards a coherent strategy in the management of e-journal content.
Delivered by Peter Burnhill at Text Mining for Scholarly Communications and Repositories Joint Workshop, Manchester Interdisciplinary Biocentre, University of Manchester, 28-29 October 2009
Digital Heritage 2015: International TAG CLOUD Project Workshop
Presentation by Holly Wright, Archaeology Data Service, United Kingdom\
Granada, Spain
29 September 2015
Discussing the Scottish Information environment and ways to open access within social networking platforms, by K. Menzies, CDLR, given at Metadata issues and Web 2.0 services CIGS seminar, Fri 30 Jan, 2009.
http://scone.strath.ac.uk/scie/index.cfm
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Clipper @ The Meccsa Symposium on Practice Based Research
1. The Clipper Project: @ MECCSA Practice Based
Research Symposium, Edinburgh Napier University13/07/2016
1. City of Glasgow College; 2.The Open University; 3. ReachWill Ltd
Clipper: An annotation toolkit for
researchers using online audio
visual media
JohnCasey 1,Trevor Collins 2 andWill Gregory 3
2. The Problem
»Not well supported in current institutional research data
management infrastructure and planning, but the use
of such media is rapidly expanding.
»The nature of the media itself - compared to traditional
academic textual resources:
› Large file sizes
› ‘Lumpy’ data format, that’s hard to analyse and it is even
harder to share your analysis
3. The Solution
»Clipper enables users to create ‘virtual’ clips that can be
annotated using free text and shared as URIs - without
altering or copying the original media files.
»The general aim of Clipper is summed up by this strapline:
“making video and audio as easy to work with as text”
4. Clipper: In a nutshell
» Clipper 1. 2. 3…and 4
1. Clip: Create a virtual clip (i.e.
source file, start and stop
point)
2. Organise: Annotate and store
clips and cliplists
3. Share: Cool URIs for sharing
playable clips, cliplists &
annotations
4. Portable:Your data is not
trapped…you can export,
convert and move etc.
“making video and audio as easy to work with as text”
5. Deliverables Autumn 2016 onwards
1. Code: Open source code
2.Service: Online service that
enables users to cite,
reference, quote and
annotate online audio-
visual resources just like
text
3. Continued Development:
New features, projects and
collaborations
6. Phase 3: Participants
» Clipper consortium
› City of GlasgowCollege
› Open University
› ReachWill Limited
» Pilot projects
› The Royal Scottish Conservatoire
› EUSCREEN
› The Roslin Institute
› BUFVC
»Industry / technology
support (collaborators)
› Microsoft Research / Azure (cloud
services)
› W3C AWG
› Digirati (data model standards -
IIIF)
› Software Sustainability Institute
› Nature Journals
7. Implications for Practice Based Research
»Utility
»Impact (REF)
»Curation
»Innovation Platform e.g.
› Archive Deep Access and Storytelling
› Collaboration
› Shared Authorship
› Citizen Research
»NB web annotation is rapidly developing…seeW3C work
8. Future Plans:
»Widening our focus
› Education and training
› Culture and Heritage
»New projects, collaborators and funding…
9. Clipper: Contacts and further info
»Contacts
› John Casey (john.c.casey@googlemail.com)
› Trevor Collins (trevor.collins@open.ac.uk)
› Will Gregory (reachwill@gmail.com)
»Further information
› Blog: http://blog.clippertube.com
› Demo: http://clippertube.com/rcs/dip
› Twitter: #clippertube @clipper_rdm
11. Demo
»Video –MECCSA DEMO
› http://clippertube.com/rcs/dip/wp-
content/users/clipper30/1465735449567/
»Web link to Demo site (prototype)
› http://clippertube.com/rcs/dip/
»Handouts for self-registration and instructions
12. Clipper &The W3C AWG
“From this perspective Clipper is both an Annotation Engine and Aggregator”
» TheW3CWeb AnnotationWorking Group
› http://www.w3.org/annotation/
› About to be formalised
› Big implications for all research…
» Clipper generates annotations at increasing levels of granularity re:
the timeline(s)
» Clipper collects annotations from different sources at increasing
levels of scale re: the timeline(s)
13. Clipper &The W3C AWG
“From this perspective Clipper is both an Annotation Engine and Aggregator”
» Clipper generates annotations at increasing levels of granularity re:
the timeline(s)
› Online media source bookmarked
› Virtual Clip created from source timeline
› Textual Annotations ‘pinned’ to timeline of Clips
» Clipper collects annotations at increasing levels of scale re: the
timeline(s)
› Clip – a media source and its `Clipper’ annotations
› Cliplist – a collection of different clips and their `Clipper’ annotations
› Project – a collection of Cliplists
15. Current Development Work
» Rebuild previous prototype from scratch
› Mobile first
› Modern , open and scalable tech
› Free open source code
» Standards Integration
› W3C Annotation Data Model– current
› Future
– IIIF (International Image Interoperability Framework) for data model
– DOI for associating Clipper outputs with research data providers
– ORCID for researcher identity
– OAI-PMH for sharing metadata
16. Clipper: Contacts and further info
»Contacts
› John Casey (john.c.casey@googlemail.com)
› Trevor Collins (trevor.collins@open.ac.uk)
› Will Gregory (reachwill@gmail.com)
»Further information
› Blog: http://blog.clippertube.com
› Demo: http://clippertube.com/rcs/dip
› Twitter: #clippertube @clipper_rdm