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E-Infrastructure support for the life sciences:
Preparing for the data deluge
Rafael Jimenez
ELIXIR CTO
15 May, 2014
BioMedBridges
Challenges of big data
Aims of the workshop
Second BioMedBridges AGM
e-infrastructure advisory board meeting
with BMS RI technical representatives
10-11 March 2014
Florence, Italy
How does it affect data
sharing in life sciences?
Large-scale data sharing in the life sciences
http://www.mrc.ac.uk/Utilities/Documentrecord/index.htm?d=MRC002552
How does big data affect data sharing?
http://www.mrc.ac.uk/Utilities/Documentrecord/index.htm?d=MRC002552
Storage Storage
Storage
Storage
How does big data affect data sharing?
http://www.mrc.ac.uk/Utilities/Documentrecord/index.htm?d=MRC002552
Transfer
Transfer Transfer
Transfer
Transfer
How does big data affect data sharing?
http://www.mrc.ac.uk/Utilities/Documentrecord/index.htm?d=MRC002552
Compute Compute
Compute
Compute
Data growth
how to reduce the IT budget shortfall?
http://www.eweek.com/
Data growth
What data is relevant?
Problems of big data
http://www.mrc.ac.uk/Utilities/Documentrecord/index.htm?d=MRC002552
Compute Compute
Compute
Storage Compute Transfer
Transfer
Transfer Transfer
Transfer
Storage Storage
Storage
What How Where
Data deposition
Data submission
14
Submissions
raw data
processed data
metadata
Centralized
database
Data sharing
The casual approach ‘data on my disk and
available to anyone who requests it'
Submission to data repositories
Data submissions
16
Data
repository
Journal
submission
Data
repository
Journal
submission reads
Journal request Curator
Data
repository
Data Management Plan
submission
Data management
+
Data sharing
The casual approach ‘data on my disk and
available to anyone who requests it'
Submission to data repositories
Will big data affect data deposition?
Data submissions
How much data?
How much available data?
Knowledge exchange workshop
 Discussion of big data challenges in life sciences
 Focus on few representative domains
 Looking 5 years ahead
 Jointly identify potential solutions to our problems
Data
ICT
e-infrastructures
LS
life sciencesPhysical facilities
Scientific information
Transfer
Computation
Storage
Data challenges of different science communities
http://tinyurl.com/ienfra
e-infrastructures
Open discussion
Group sessions
Dinner
Summary of yesterday’s discussion
Solutions for big data in other science communities
Group sessions
Group sessions
Closing discussion
Thanks to …
 You!
 BMB
Stephanie Suhr Tom Hancocks Cath Brooksbank
Relevant data

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Challenges of big data. Aims of the workshop.

Editor's Notes

  1. Data resource: Sustainability, availability and integration
  2. necessary to understand, develop or reproduce published research
  3. Not all the data make it to the public repositories
  4. necessary to understand, develop or reproduce published research