SlideShare a Scribd company logo
Ilkka Lappalainen The European Genotype Archive - updated and upgraded
The European Genotype Archive (EGA) Data Accession Archive Services ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
Focus on Development Data Exchange Phenotype Data Submission API ,[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object],[object Object]
EGA model  dumped files website Secure FTP site genotype CNV sequence
Modularised Solution for Data Storage Individuals collated into collections Technology used for genotyping Genotypes and  associated values collection(s) case/control platform(s) analysis ega-individual ega-sample ega-platform ega-genotypes ega-study Samples taken from individuals audit QC
EGA model  dumped files website Secure FTP site genotype CNV sequence
 
 
 
 
 
EGA statistics ,[object Object],[object Object],[object Object],[object Object],[object Object]
EGA development team ,[object Object],[object Object],[object Object]

More Related Content

Viewers also liked

Atish_Gaikwad_Dot_Net_9_4_Years_Exp
Atish_Gaikwad_Dot_Net_9_4_Years_ExpAtish_Gaikwad_Dot_Net_9_4_Years_Exp
Atish_Gaikwad_Dot_Net_9_4_Years_ExpAtish Gaikwad
 
E Resume Rob Mclean
E Resume   Rob McleanE Resume   Rob Mclean
E Resume Rob Mcleanrobmclean
 
Dcms Twitter Intro
Dcms Twitter IntroDcms Twitter Intro
Dcms Twitter Intro
Newscounter
 
[Challenge:Future] Let us Commit !
[Challenge:Future] Let us Commit ![Challenge:Future] Let us Commit !
[Challenge:Future] Let us Commit !Challenge:Future
 
[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理
[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理
[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理
悠識學院
 
จิตติพันธ์ วะราโพธิ์ ม.4
จิตติพันธ์ วะราโพธิ์ ม.4จิตติพันธ์ วะราโพธิ์ ม.4
จิตติพันธ์ วะราโพธิ์ ม.4artty2541
 
SURAT KELULUSAN OPKIM 10 PENJURU (JPPEL)
SURAT KELULUSAN OPKIM 10 PENJURU  (JPPEL)SURAT KELULUSAN OPKIM 10 PENJURU  (JPPEL)
SURAT KELULUSAN OPKIM 10 PENJURU (JPPEL)halwaizzati
 
Los animales
Los animalesLos animales
Los animales
Quezavargas
 
[Challenge:Future] Tounj: Perfect Education for Dream Job
[Challenge:Future] Tounj: Perfect Education for Dream Job[Challenge:Future] Tounj: Perfect Education for Dream Job
[Challenge:Future] Tounj: Perfect Education for Dream JobChallenge:Future
 

Viewers also liked (10)

Atish_Gaikwad_Dot_Net_9_4_Years_Exp
Atish_Gaikwad_Dot_Net_9_4_Years_ExpAtish_Gaikwad_Dot_Net_9_4_Years_Exp
Atish_Gaikwad_Dot_Net_9_4_Years_Exp
 
E Resume Rob Mclean
E Resume   Rob McleanE Resume   Rob Mclean
E Resume Rob Mclean
 
Dcms Twitter Intro
Dcms Twitter IntroDcms Twitter Intro
Dcms Twitter Intro
 
[Challenge:Future] Let us Commit !
[Challenge:Future] Let us Commit ![Challenge:Future] Let us Commit !
[Challenge:Future] Let us Commit !
 
[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理
[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理
[ECX2015] 用户体验与商业模式的平衡实践 ─ 劉宇 / 攜程 UED高級用戶研究經理
 
จิตติพันธ์ วะราโพธิ์ ม.4
จิตติพันธ์ วะราโพธิ์ ม.4จิตติพันธ์ วะราโพธิ์ ม.4
จิตติพันธ์ วะราโพธิ์ ม.4
 
SURAT KELULUSAN OPKIM 10 PENJURU (JPPEL)
SURAT KELULUSAN OPKIM 10 PENJURU  (JPPEL)SURAT KELULUSAN OPKIM 10 PENJURU  (JPPEL)
SURAT KELULUSAN OPKIM 10 PENJURU (JPPEL)
 
Los animales
Los animalesLos animales
Los animales
 
Log
LogLog
Log
 
[Challenge:Future] Tounj: Perfect Education for Dream Job
[Challenge:Future] Tounj: Perfect Education for Dream Job[Challenge:Future] Tounj: Perfect Education for Dream Job
[Challenge:Future] Tounj: Perfect Education for Dream Job
 

Similar to Ega Introduction

Understanding Genome
Understanding Genome Understanding Genome
Understanding Genome
Rajendra K Labala
 
Variation and the VEP: Ensembl Online Webinar series
Variation and the VEP: Ensembl Online Webinar seriesVariation and the VEP: Ensembl Online Webinar series
Variation and the VEP: Ensembl Online Webinar series
Denise Carvalho-Silva, PhD
 
FAIR data and model management for systems biology.
FAIR data and model management for systems biology.FAIR data and model management for systems biology.
FAIR data and model management for systems biology.
FAIRDOM
 
DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...
DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...
DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...
Felipe Albrecht
 
Rare Variant Analysis Workflows: Analyzing NGS Data in Large Cohorts
Rare Variant Analysis Workflows: Analyzing NGS Data in Large CohortsRare Variant Analysis Workflows: Analyzing NGS Data in Large Cohorts
Rare Variant Analysis Workflows: Analyzing NGS Data in Large Cohorts
Golden Helix Inc
 
Using VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research WorkflowsUsing VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research Workflows
Delaina Hawkins
 
Using VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research WorkflowsUsing VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research Workflows
Golden Helix Inc
 
Genome resources at EMBL-EBI: Ensembl and Ensembl Genomes
Genome resources at EMBL-EBI: Ensembl and Ensembl GenomesGenome resources at EMBL-EBI: Ensembl and Ensembl Genomes
Genome resources at EMBL-EBI: Ensembl and Ensembl Genomes
EBI
 
TGAC Browser bosc 2014
TGAC Browser bosc 2014TGAC Browser bosc 2014
TGAC Browser bosc 2014
Anil Thanki
 

Similar to Ega Introduction (11)

Ensembl genome
Ensembl genomeEnsembl genome
Ensembl genome
 
Understanding Genome
Understanding Genome Understanding Genome
Understanding Genome
 
Variation and the VEP: Ensembl Online Webinar series
Variation and the VEP: Ensembl Online Webinar seriesVariation and the VEP: Ensembl Online Webinar series
Variation and the VEP: Ensembl Online Webinar series
 
FAIR data and model management for systems biology.
FAIR data and model management for systems biology.FAIR data and model management for systems biology.
FAIR data and model management for systems biology.
 
DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...
DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...
DeepBlue epigenomic data server: programmatic data retrieval and analysis of ...
 
Parkinson mibbi
Parkinson mibbiParkinson mibbi
Parkinson mibbi
 
Rare Variant Analysis Workflows: Analyzing NGS Data in Large Cohorts
Rare Variant Analysis Workflows: Analyzing NGS Data in Large CohortsRare Variant Analysis Workflows: Analyzing NGS Data in Large Cohorts
Rare Variant Analysis Workflows: Analyzing NGS Data in Large Cohorts
 
Using VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research WorkflowsUsing VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research Workflows
 
Using VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research WorkflowsUsing VarSeq to Improve Variant Analysis Research Workflows
Using VarSeq to Improve Variant Analysis Research Workflows
 
Genome resources at EMBL-EBI: Ensembl and Ensembl Genomes
Genome resources at EMBL-EBI: Ensembl and Ensembl GenomesGenome resources at EMBL-EBI: Ensembl and Ensembl Genomes
Genome resources at EMBL-EBI: Ensembl and Ensembl Genomes
 
TGAC Browser bosc 2014
TGAC Browser bosc 2014TGAC Browser bosc 2014
TGAC Browser bosc 2014
 

Recently uploaded

DevOps and Testing slides at DASA Connect
DevOps and Testing slides at DASA ConnectDevOps and Testing slides at DASA Connect
DevOps and Testing slides at DASA Connect
Kari Kakkonen
 
Microsoft - Power Platform_G.Aspiotis.pdf
Microsoft - Power Platform_G.Aspiotis.pdfMicrosoft - Power Platform_G.Aspiotis.pdf
Microsoft - Power Platform_G.Aspiotis.pdf
Uni Systems S.M.S.A.
 
Communications Mining Series - Zero to Hero - Session 1
Communications Mining Series - Zero to Hero - Session 1Communications Mining Series - Zero to Hero - Session 1
Communications Mining Series - Zero to Hero - Session 1
DianaGray10
 
Elevating Tactical DDD Patterns Through Object Calisthenics
Elevating Tactical DDD Patterns Through Object CalisthenicsElevating Tactical DDD Patterns Through Object Calisthenics
Elevating Tactical DDD Patterns Through Object Calisthenics
Dorra BARTAGUIZ
 
PHP Frameworks: I want to break free (IPC Berlin 2024)
PHP Frameworks: I want to break free (IPC Berlin 2024)PHP Frameworks: I want to break free (IPC Berlin 2024)
PHP Frameworks: I want to break free (IPC Berlin 2024)
Ralf Eggert
 
Free Complete Python - A step towards Data Science
Free Complete Python - A step towards Data ScienceFree Complete Python - A step towards Data Science
Free Complete Python - A step towards Data Science
RinaMondal9
 
Securing your Kubernetes cluster_ a step-by-step guide to success !
Securing your Kubernetes cluster_ a step-by-step guide to success !Securing your Kubernetes cluster_ a step-by-step guide to success !
Securing your Kubernetes cluster_ a step-by-step guide to success !
KatiaHIMEUR1
 
FIDO Alliance Osaka Seminar: FIDO Security Aspects.pdf
FIDO Alliance Osaka Seminar: FIDO Security Aspects.pdfFIDO Alliance Osaka Seminar: FIDO Security Aspects.pdf
FIDO Alliance Osaka Seminar: FIDO Security Aspects.pdf
FIDO Alliance
 
FIDO Alliance Osaka Seminar: Overview.pdf
FIDO Alliance Osaka Seminar: Overview.pdfFIDO Alliance Osaka Seminar: Overview.pdf
FIDO Alliance Osaka Seminar: Overview.pdf
FIDO Alliance
 
Smart TV Buyer Insights Survey 2024 by 91mobiles.pdf
Smart TV Buyer Insights Survey 2024 by 91mobiles.pdfSmart TV Buyer Insights Survey 2024 by 91mobiles.pdf
Smart TV Buyer Insights Survey 2024 by 91mobiles.pdf
91mobiles
 
Epistemic Interaction - tuning interfaces to provide information for AI support
Epistemic Interaction - tuning interfaces to provide information for AI supportEpistemic Interaction - tuning interfaces to provide information for AI support
Epistemic Interaction - tuning interfaces to provide information for AI support
Alan Dix
 
Removing Uninteresting Bytes in Software Fuzzing
Removing Uninteresting Bytes in Software FuzzingRemoving Uninteresting Bytes in Software Fuzzing
Removing Uninteresting Bytes in Software Fuzzing
Aftab Hussain
 
GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...
GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...
GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...
Neo4j
 
GraphRAG is All You need? LLM & Knowledge Graph
GraphRAG is All You need? LLM & Knowledge GraphGraphRAG is All You need? LLM & Knowledge Graph
GraphRAG is All You need? LLM & Knowledge Graph
Guy Korland
 
Encryption in Microsoft 365 - ExpertsLive Netherlands 2024
Encryption in Microsoft 365 - ExpertsLive Netherlands 2024Encryption in Microsoft 365 - ExpertsLive Netherlands 2024
Encryption in Microsoft 365 - ExpertsLive Netherlands 2024
Albert Hoitingh
 
The Future of Platform Engineering
The Future of Platform EngineeringThe Future of Platform Engineering
The Future of Platform Engineering
Jemma Hussein Allen
 
By Design, not by Accident - Agile Venture Bolzano 2024
By Design, not by Accident - Agile Venture Bolzano 2024By Design, not by Accident - Agile Venture Bolzano 2024
By Design, not by Accident - Agile Venture Bolzano 2024
Pierluigi Pugliese
 
Pushing the limits of ePRTC: 100ns holdover for 100 days
Pushing the limits of ePRTC: 100ns holdover for 100 daysPushing the limits of ePRTC: 100ns holdover for 100 days
Pushing the limits of ePRTC: 100ns holdover for 100 days
Adtran
 
Uni Systems Copilot event_05062024_C.Vlachos.pdf
Uni Systems Copilot event_05062024_C.Vlachos.pdfUni Systems Copilot event_05062024_C.Vlachos.pdf
Uni Systems Copilot event_05062024_C.Vlachos.pdf
Uni Systems S.M.S.A.
 
SAP Sapphire 2024 - ASUG301 building better apps with SAP Fiori.pdf
SAP Sapphire 2024 - ASUG301 building better apps with SAP Fiori.pdfSAP Sapphire 2024 - ASUG301 building better apps with SAP Fiori.pdf
SAP Sapphire 2024 - ASUG301 building better apps with SAP Fiori.pdf
Peter Spielvogel
 

Recently uploaded (20)

DevOps and Testing slides at DASA Connect
DevOps and Testing slides at DASA ConnectDevOps and Testing slides at DASA Connect
DevOps and Testing slides at DASA Connect
 
Microsoft - Power Platform_G.Aspiotis.pdf
Microsoft - Power Platform_G.Aspiotis.pdfMicrosoft - Power Platform_G.Aspiotis.pdf
Microsoft - Power Platform_G.Aspiotis.pdf
 
Communications Mining Series - Zero to Hero - Session 1
Communications Mining Series - Zero to Hero - Session 1Communications Mining Series - Zero to Hero - Session 1
Communications Mining Series - Zero to Hero - Session 1
 
Elevating Tactical DDD Patterns Through Object Calisthenics
Elevating Tactical DDD Patterns Through Object CalisthenicsElevating Tactical DDD Patterns Through Object Calisthenics
Elevating Tactical DDD Patterns Through Object Calisthenics
 
PHP Frameworks: I want to break free (IPC Berlin 2024)
PHP Frameworks: I want to break free (IPC Berlin 2024)PHP Frameworks: I want to break free (IPC Berlin 2024)
PHP Frameworks: I want to break free (IPC Berlin 2024)
 
Free Complete Python - A step towards Data Science
Free Complete Python - A step towards Data ScienceFree Complete Python - A step towards Data Science
Free Complete Python - A step towards Data Science
 
Securing your Kubernetes cluster_ a step-by-step guide to success !
Securing your Kubernetes cluster_ a step-by-step guide to success !Securing your Kubernetes cluster_ a step-by-step guide to success !
Securing your Kubernetes cluster_ a step-by-step guide to success !
 
FIDO Alliance Osaka Seminar: FIDO Security Aspects.pdf
FIDO Alliance Osaka Seminar: FIDO Security Aspects.pdfFIDO Alliance Osaka Seminar: FIDO Security Aspects.pdf
FIDO Alliance Osaka Seminar: FIDO Security Aspects.pdf
 
FIDO Alliance Osaka Seminar: Overview.pdf
FIDO Alliance Osaka Seminar: Overview.pdfFIDO Alliance Osaka Seminar: Overview.pdf
FIDO Alliance Osaka Seminar: Overview.pdf
 
Smart TV Buyer Insights Survey 2024 by 91mobiles.pdf
Smart TV Buyer Insights Survey 2024 by 91mobiles.pdfSmart TV Buyer Insights Survey 2024 by 91mobiles.pdf
Smart TV Buyer Insights Survey 2024 by 91mobiles.pdf
 
Epistemic Interaction - tuning interfaces to provide information for AI support
Epistemic Interaction - tuning interfaces to provide information for AI supportEpistemic Interaction - tuning interfaces to provide information for AI support
Epistemic Interaction - tuning interfaces to provide information for AI support
 
Removing Uninteresting Bytes in Software Fuzzing
Removing Uninteresting Bytes in Software FuzzingRemoving Uninteresting Bytes in Software Fuzzing
Removing Uninteresting Bytes in Software Fuzzing
 
GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...
GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...
GraphSummit Singapore | Enhancing Changi Airport Group's Passenger Experience...
 
GraphRAG is All You need? LLM & Knowledge Graph
GraphRAG is All You need? LLM & Knowledge GraphGraphRAG is All You need? LLM & Knowledge Graph
GraphRAG is All You need? LLM & Knowledge Graph
 
Encryption in Microsoft 365 - ExpertsLive Netherlands 2024
Encryption in Microsoft 365 - ExpertsLive Netherlands 2024Encryption in Microsoft 365 - ExpertsLive Netherlands 2024
Encryption in Microsoft 365 - ExpertsLive Netherlands 2024
 
The Future of Platform Engineering
The Future of Platform EngineeringThe Future of Platform Engineering
The Future of Platform Engineering
 
By Design, not by Accident - Agile Venture Bolzano 2024
By Design, not by Accident - Agile Venture Bolzano 2024By Design, not by Accident - Agile Venture Bolzano 2024
By Design, not by Accident - Agile Venture Bolzano 2024
 
Pushing the limits of ePRTC: 100ns holdover for 100 days
Pushing the limits of ePRTC: 100ns holdover for 100 daysPushing the limits of ePRTC: 100ns holdover for 100 days
Pushing the limits of ePRTC: 100ns holdover for 100 days
 
Uni Systems Copilot event_05062024_C.Vlachos.pdf
Uni Systems Copilot event_05062024_C.Vlachos.pdfUni Systems Copilot event_05062024_C.Vlachos.pdf
Uni Systems Copilot event_05062024_C.Vlachos.pdf
 
SAP Sapphire 2024 - ASUG301 building better apps with SAP Fiori.pdf
SAP Sapphire 2024 - ASUG301 building better apps with SAP Fiori.pdfSAP Sapphire 2024 - ASUG301 building better apps with SAP Fiori.pdf
SAP Sapphire 2024 - ASUG301 building better apps with SAP Fiori.pdf
 

Ega Introduction

  • 1. Ilkka Lappalainen The European Genotype Archive - updated and upgraded
  • 2.
  • 3.
  • 4. EGA model dumped files website Secure FTP site genotype CNV sequence
  • 5. Modularised Solution for Data Storage Individuals collated into collections Technology used for genotyping Genotypes and associated values collection(s) case/control platform(s) analysis ega-individual ega-sample ega-platform ega-genotypes ega-study Samples taken from individuals audit QC
  • 6. EGA model dumped files website Secure FTP site genotype CNV sequence
  • 7.  
  • 8.  
  • 9.  
  • 10.  
  • 11.  
  • 12.
  • 13.