European agrobiodioversity, ECPGR network meeting on EURISCO, Central Crop Da...Dag Endresen
Presentation on the Darwin Core standard for data exchange and the germplasm extension for genebanks during the 2014 workshop of the ECPGR Documentation and Information Working Group "Tailoring the Documentation of Plant Genetic Resources in Europe to the Needs of the User" (http://www.ecpgr.cgiar.org/working_groups/documentation_information/docinfo2014.html) in Prague-Ruzyně, Czech Republic, 20th May 2014.
Short URL: https://goo.gl/C5UEnU
DOI: http://doi.org/10.13140/RG.2.2.10865.28006
Darwin Core extension for germplasm (11th December 2013)Dag Endresen
Presentation on the Darwin Core germplasm extension for the "1st International e-Conference on Germplasm Data Interoperability: Session 2", 11th December 2013 (https://sites.google.com/site/germplasminteroperability/). Publishing germplasm information on plant genetic resources and their traits using the Darwin Core standard and the germplasm extension for genebanks.
Data publication meeting at the Department of Ecology and Natural Resource Management, Norwegian University of Life Sciences (NMBU), GBIF Norway and the Norwegian Biodiversity Information Centre (Artsdatabanken).
Persistent identifiers for digitized specimens (2013)Dag Endresen
Persistent identifiers (PID) for digitized museum collections. Presented at the European GBIF meeting at Digitarium in Jounsuu, Finland, 6 March 2013. A proposed model for assigning UUID PIDs using QR-codes during the imaging and digitization process.
GBIF-Norway status for the 6th European GBIF nodes meeting April 2014Dag Endresen
Slides prepared for the 6th European GBIF nodes meeting in Brussels. At the meeting these slides was replaced by a live online demo of these tools. Topics include citizen science transcription of specimen labels, persistent identifiers and custom collection portals. All slides are CC-by.
EURISCO and GBIF IPT, at the Vavilov Institute in St Petersburg (27 April 2010)Dag Endresen
Visit to the NI Vavilov Institute for Plant Industry (VIR) in April 2010. Installation of the GBIF IPT toolkit for data publishing as a test upgrade for the EURISCO data infrastructure of European genebanks.
Knowledge Organization System (KOS) for biodiversity information resources, G...Dag Endresen
Slides from a presentation on the Knowledge Organization System (KOS) work program for GBIF. KOS developments for biodiversity information resources and input to the emerging Vocabulary Management Task Group (VoMaG).
Links
GBIF KOS prototype tools, http://kos.gbif.org/
Tool: Semantic Wiki prototype, http://terms.gbif.org/wiki/
Tool: ISOcat prototype demo, http://kos.gbif.org/isocat/
GBIF concept vocabulary term browser, http://kos.gbif.org/termbrowser/
GBIF Resources Repository, http://rs.gbif.org/terms/
GBIF Vocabulary Server, http://vocabularies.gbif.org/
GBIF Resources Browser, http://tools.gbif.org/resource-browser/
European agrobiodioversity, ECPGR network meeting on EURISCO, Central Crop Da...Dag Endresen
Presentation on the Darwin Core standard for data exchange and the germplasm extension for genebanks during the 2014 workshop of the ECPGR Documentation and Information Working Group "Tailoring the Documentation of Plant Genetic Resources in Europe to the Needs of the User" (http://www.ecpgr.cgiar.org/working_groups/documentation_information/docinfo2014.html) in Prague-Ruzyně, Czech Republic, 20th May 2014.
Short URL: https://goo.gl/C5UEnU
DOI: http://doi.org/10.13140/RG.2.2.10865.28006
Darwin Core extension for germplasm (11th December 2013)Dag Endresen
Presentation on the Darwin Core germplasm extension for the "1st International e-Conference on Germplasm Data Interoperability: Session 2", 11th December 2013 (https://sites.google.com/site/germplasminteroperability/). Publishing germplasm information on plant genetic resources and their traits using the Darwin Core standard and the germplasm extension for genebanks.
Data publication meeting at the Department of Ecology and Natural Resource Management, Norwegian University of Life Sciences (NMBU), GBIF Norway and the Norwegian Biodiversity Information Centre (Artsdatabanken).
Persistent identifiers for digitized specimens (2013)Dag Endresen
Persistent identifiers (PID) for digitized museum collections. Presented at the European GBIF meeting at Digitarium in Jounsuu, Finland, 6 March 2013. A proposed model for assigning UUID PIDs using QR-codes during the imaging and digitization process.
GBIF-Norway status for the 6th European GBIF nodes meeting April 2014Dag Endresen
Slides prepared for the 6th European GBIF nodes meeting in Brussels. At the meeting these slides was replaced by a live online demo of these tools. Topics include citizen science transcription of specimen labels, persistent identifiers and custom collection portals. All slides are CC-by.
EURISCO and GBIF IPT, at the Vavilov Institute in St Petersburg (27 April 2010)Dag Endresen
Visit to the NI Vavilov Institute for Plant Industry (VIR) in April 2010. Installation of the GBIF IPT toolkit for data publishing as a test upgrade for the EURISCO data infrastructure of European genebanks.
Knowledge Organization System (KOS) for biodiversity information resources, G...Dag Endresen
Slides from a presentation on the Knowledge Organization System (KOS) work program for GBIF. KOS developments for biodiversity information resources and input to the emerging Vocabulary Management Task Group (VoMaG).
Links
GBIF KOS prototype tools, http://kos.gbif.org/
Tool: Semantic Wiki prototype, http://terms.gbif.org/wiki/
Tool: ISOcat prototype demo, http://kos.gbif.org/isocat/
GBIF concept vocabulary term browser, http://kos.gbif.org/termbrowser/
GBIF Resources Repository, http://rs.gbif.org/terms/
GBIF Vocabulary Server, http://vocabularies.gbif.org/
GBIF Resources Browser, http://tools.gbif.org/resource-browser/
#HepaticaWeek April 2016, GBIF data publishingDag Endresen
Citizen science species observation reporting and data publishing with the Global Biodiversity Information Facility (GBIF). Video feed available at: https://youtu.be/t22QmFPcvOM?t=34m4s
Global Biodiversity Information Facility - 2013Dag Endresen
Presentation of the Global Biodiversity Information Facility (GBIF), GBIF-Norway and the Norwegian Biodiversity Information Centre (NBIC, Artsdatabanken) at the Norwegian Institute for Forestry and Landscape (Skog og Landskap) at Ås outside Oslo on the 17th October 2013. Seminar together with the Norwegian Biodiversity Information Centre (NBIC, Artsdatabanken).
TDWG and GBIF, at European genbank network meeting (Bonn, April 2004)Dag Endresen
Presentation of TDWG and GBIF for the ECP/GR D&I Network meeting at ZADI Bonn Germany 11th April 2005. Dag Endresen (Nordic Gene Bank). TDWG is a standardization body for Biodiversity Information Standards; GBIF is a Global Biodiversity Information Facility for free and open access to biodiversity data.
Data exchange alternatives, GIGA TAG (2009)Dag Endresen
GIGA TAG meeting at Bioversity International, Rome, Italy 18th May 2009. Data exchange alternatives for the Global Information on Germplasm Accessions (GIGA) project. Dag Endresen (Bioversity/NordGen).
GBIF BIFA mentoring, Day 4b Event core, July 2016Dag Endresen
GBIF BIFA mentoring in Los Banos, Philippines for the South-East Asian ASEAN Biodiversity Heritage Parks. With Dr. Yu-Huang Wang, Dr. Po-Jen Chiang, and Guan-Shuo Mai from TaiBIF the GBIF node of Taiwan (Chinese Tapei); and the Biodiversity Informatics team at ASEAN Centre For Biodiversity. http://www.gbif.no/events/2016/gbif-bifa-mentoring.html
GBIF BIFA mentoring, Day 5a Data management, July 2016Dag Endresen
GBIF BIFA mentoring in Los Banos, Philippines for the South-East Asian ASEAN Biodiversity Heritage Parks. With Dr. Yu-Huang Wang, Dr. Po-Jen Chiang, and Guan-Shuo Mai from TaiBIF the GBIF node of Taiwan (Chinese Tapei); and the Biodiversity Informatics team at ASEAN Centre For Biodiversity. http://www.gbif.no/events/2016/gbif-bifa-mentoring.html
Credits: EUDAT/OpenAire, December 2015 & May 2016, CC-BY-4.0
* http://www.slideshare.net/EUDAT/eudat-research-data-management
* http://www.slideshare.net/EUDAT/research-data-management-introduction-eudatopen-aire-webinar?ref=https://eudat.eu/events/webinar/research-data-management-an-introductory-webinar-from-openaire-and-eudat
* https://eudat.eu/events/webinar/research-data-management-an-introductory-webinar-from-openaire-and-eudat
* http://www.instantpresenter.com/WebConference/RecordingDefault.aspx?c_psrid=EB57D6888147
Trait Mining, prediction of agricultural traits in plant genetic resources with ecological parameters. Focused Identification of Germplasm Strategy (FIGS). For the Vavilov seminars at the IPK Gatersleben 13th June 2007. Dag Endresen, Michael Mackay, Kenneth Street.
EURISCO demo installations of IPT, at GBIF EU Nodes meeting in Alicante (11 M...Dag Endresen
Regional GBIF NODES meeting of Europe in March 2010. Presentation of current activities from the NordGen NODE. Implementations of the GBIF IPT toolkit for genebanks in Europe. Upgrade for selected genebanks from the BioCASE publishing toolkit to the IPT. First step of a scheduled larger implementation planned to start in 2011 as part of the EuroGeneBank application pending EU funding decision. NordGen IPT EURISCO
GBIF BIFA mentoring, Day 2 Publish data, July 2016Dag Endresen
GBIF BIFA mentoring in Los Banos, Philippines for the South-East Asian ASEAN Biodiversity Heritage Parks. With Dr. Yu-Huang Wang, Dr. Po-Jen Chiang, and Guan-Shuo Mai from TaiBIF the GBIF node of Taiwan (Chinese Tapei); and the Biodiversity Informatics team at ASEAN Centre For Biodiversity. http://www.gbif.no/events/2016/gbif-bifa-mentoring.html
Intro to GBIF: Infrastructures and Platforms for Environmental Crowd Sensing ...Kyle Copas
Slides presented while representing GBIF—the Global Biodiversity Information Facility (http://gbif.org)—at 'Infrastructures and Platforms for Environmental Crowd Sensing and Big Data' at the European Environment Agency on 9 Sept 2015. The session was part of EnviroInfo and ICT for Sustainability, a three-day conference in Copenhagen hosted by the University of Copenhagen in collaboration with the European Environment Agency.
Presentation Open Science from the Global Biodiversity Information Facility at the Living Norway colloquium in Trondheim on 12 October 2020.
Slides credit: based on slides created by the GBIF Secretariat Scientific Officer; Biodiversity Open Data Ambassadors [ https://www.gbif.org/article/6dNF1d0tgcI4cmqeoS2sQ4/biodiversity-open-data-ambassadors ]. Video recording available at https://youtu.be/OpvxH6hj9K8?t=5786
CC-BY 4.0 Dag Endresen https://orcid.org/0000-0002-2352-5497
See also http://bit.ly/biodiversityinformatics
GBIF registry (GBRDS), at European Nodes meeting in Alicante, Spain (10 March...Dag Endresen
Regional NODES meeting of Europe 2010. Presentation of the Global Biodiversity Resources Discovery System (GBRDS, under development) for the NODES. How do we the NODES want the GBRDS to look like. What do we the NODES wish/need the GBRDS to be.
http://www.gbif.org/
http://gbrds.gbif.org/
http://code.google.com/p/gbif-registry/
EURISCO needs and priorities, at CGIAR ICT-KM Workshop, IPGRI, Rome (2005)Dag Endresen
European genebanks, EURISCO and NGB. Overview of needs and priorities. CGIAR ICT-KM training workshop on information interoperability, 14th June 2005, IPGRI Rome Italy. Dag Endresen (Nordic Gene Bank).
EURISCO and GBIF, at the European genbank network meeting (Bonn, April 2004)Dag Endresen
Potential relationship and collaboration between EURISCO and GBIF - a distributed network of databases for the ECP/GR D&I network meeting at ZADI Bonn Germany 11th April 2005. Dag Endresen (Nordic Gene Bank). GBIF is a Global Biodiversity Information Facility for free and open access to biodiversity data.
Introduction to GBIF. GBIF seminar in Bergen. 2016-12-14Dag Endresen
GBIF data publishing seminar at the Department for Biology at the University of Bergen. http://www.gbif.no/events/2016/data-publishing-seminar-in-bergen.html
GBIF data publishing. GBIF seminar in Bergen. 2016-12-14Dag Endresen
GBIF data publishing seminar at the Department for Biology at the University of Bergen. http://www.gbif.no/events/2016/data-publishing-seminar-in-bergen.html
Global Biodiversity Information Facility (GBIF) - 2012Dag Endresen
Presentation of the Global Biodiversity Information Facility (GBIF) and GBIF Norway for the Department of Technical and Scientific Conservation (CONSERV) at the Natural History Museum, University of Oslo. Tøyen, Oslo, 7 November 2012.
Data Exchange Model Of EPGRIS, seminar at the Vavilov Institute in St Petersb...Dag Endresen
Data exchange model of the EPGRIS project for the EURISCO database. The IV annual workshop on documentation problems in the sphere of plant genetic researches. N.I. Vavilov Institute of Plant Industry, St Petersburg March 2002. Dag Endresen (Nordic Gene Bank).
http://vir.nw.ru/
http://eurisco.ecpgr.org/
Jesse Xiao at CODATA2017: Updates to the GigaDB open access data publishing p...GigaScience, BGI Hong Kong
Jesse Xiao at the Data Publishing session at CODATA2017: Updates to the GigaDB open access data publishing platform. Wednesday 11th October in St Petersburg, Russia
#HepaticaWeek April 2016, GBIF data publishingDag Endresen
Citizen science species observation reporting and data publishing with the Global Biodiversity Information Facility (GBIF). Video feed available at: https://youtu.be/t22QmFPcvOM?t=34m4s
Global Biodiversity Information Facility - 2013Dag Endresen
Presentation of the Global Biodiversity Information Facility (GBIF), GBIF-Norway and the Norwegian Biodiversity Information Centre (NBIC, Artsdatabanken) at the Norwegian Institute for Forestry and Landscape (Skog og Landskap) at Ås outside Oslo on the 17th October 2013. Seminar together with the Norwegian Biodiversity Information Centre (NBIC, Artsdatabanken).
TDWG and GBIF, at European genbank network meeting (Bonn, April 2004)Dag Endresen
Presentation of TDWG and GBIF for the ECP/GR D&I Network meeting at ZADI Bonn Germany 11th April 2005. Dag Endresen (Nordic Gene Bank). TDWG is a standardization body for Biodiversity Information Standards; GBIF is a Global Biodiversity Information Facility for free and open access to biodiversity data.
Data exchange alternatives, GIGA TAG (2009)Dag Endresen
GIGA TAG meeting at Bioversity International, Rome, Italy 18th May 2009. Data exchange alternatives for the Global Information on Germplasm Accessions (GIGA) project. Dag Endresen (Bioversity/NordGen).
GBIF BIFA mentoring, Day 4b Event core, July 2016Dag Endresen
GBIF BIFA mentoring in Los Banos, Philippines for the South-East Asian ASEAN Biodiversity Heritage Parks. With Dr. Yu-Huang Wang, Dr. Po-Jen Chiang, and Guan-Shuo Mai from TaiBIF the GBIF node of Taiwan (Chinese Tapei); and the Biodiversity Informatics team at ASEAN Centre For Biodiversity. http://www.gbif.no/events/2016/gbif-bifa-mentoring.html
GBIF BIFA mentoring, Day 5a Data management, July 2016Dag Endresen
GBIF BIFA mentoring in Los Banos, Philippines for the South-East Asian ASEAN Biodiversity Heritage Parks. With Dr. Yu-Huang Wang, Dr. Po-Jen Chiang, and Guan-Shuo Mai from TaiBIF the GBIF node of Taiwan (Chinese Tapei); and the Biodiversity Informatics team at ASEAN Centre For Biodiversity. http://www.gbif.no/events/2016/gbif-bifa-mentoring.html
Credits: EUDAT/OpenAire, December 2015 & May 2016, CC-BY-4.0
* http://www.slideshare.net/EUDAT/eudat-research-data-management
* http://www.slideshare.net/EUDAT/research-data-management-introduction-eudatopen-aire-webinar?ref=https://eudat.eu/events/webinar/research-data-management-an-introductory-webinar-from-openaire-and-eudat
* https://eudat.eu/events/webinar/research-data-management-an-introductory-webinar-from-openaire-and-eudat
* http://www.instantpresenter.com/WebConference/RecordingDefault.aspx?c_psrid=EB57D6888147
Trait Mining, prediction of agricultural traits in plant genetic resources with ecological parameters. Focused Identification of Germplasm Strategy (FIGS). For the Vavilov seminars at the IPK Gatersleben 13th June 2007. Dag Endresen, Michael Mackay, Kenneth Street.
EURISCO demo installations of IPT, at GBIF EU Nodes meeting in Alicante (11 M...Dag Endresen
Regional GBIF NODES meeting of Europe in March 2010. Presentation of current activities from the NordGen NODE. Implementations of the GBIF IPT toolkit for genebanks in Europe. Upgrade for selected genebanks from the BioCASE publishing toolkit to the IPT. First step of a scheduled larger implementation planned to start in 2011 as part of the EuroGeneBank application pending EU funding decision. NordGen IPT EURISCO
GBIF BIFA mentoring, Day 2 Publish data, July 2016Dag Endresen
GBIF BIFA mentoring in Los Banos, Philippines for the South-East Asian ASEAN Biodiversity Heritage Parks. With Dr. Yu-Huang Wang, Dr. Po-Jen Chiang, and Guan-Shuo Mai from TaiBIF the GBIF node of Taiwan (Chinese Tapei); and the Biodiversity Informatics team at ASEAN Centre For Biodiversity. http://www.gbif.no/events/2016/gbif-bifa-mentoring.html
Intro to GBIF: Infrastructures and Platforms for Environmental Crowd Sensing ...Kyle Copas
Slides presented while representing GBIF—the Global Biodiversity Information Facility (http://gbif.org)—at 'Infrastructures and Platforms for Environmental Crowd Sensing and Big Data' at the European Environment Agency on 9 Sept 2015. The session was part of EnviroInfo and ICT for Sustainability, a three-day conference in Copenhagen hosted by the University of Copenhagen in collaboration with the European Environment Agency.
Presentation Open Science from the Global Biodiversity Information Facility at the Living Norway colloquium in Trondheim on 12 October 2020.
Slides credit: based on slides created by the GBIF Secretariat Scientific Officer; Biodiversity Open Data Ambassadors [ https://www.gbif.org/article/6dNF1d0tgcI4cmqeoS2sQ4/biodiversity-open-data-ambassadors ]. Video recording available at https://youtu.be/OpvxH6hj9K8?t=5786
CC-BY 4.0 Dag Endresen https://orcid.org/0000-0002-2352-5497
See also http://bit.ly/biodiversityinformatics
GBIF registry (GBRDS), at European Nodes meeting in Alicante, Spain (10 March...Dag Endresen
Regional NODES meeting of Europe 2010. Presentation of the Global Biodiversity Resources Discovery System (GBRDS, under development) for the NODES. How do we the NODES want the GBRDS to look like. What do we the NODES wish/need the GBRDS to be.
http://www.gbif.org/
http://gbrds.gbif.org/
http://code.google.com/p/gbif-registry/
EURISCO needs and priorities, at CGIAR ICT-KM Workshop, IPGRI, Rome (2005)Dag Endresen
European genebanks, EURISCO and NGB. Overview of needs and priorities. CGIAR ICT-KM training workshop on information interoperability, 14th June 2005, IPGRI Rome Italy. Dag Endresen (Nordic Gene Bank).
EURISCO and GBIF, at the European genbank network meeting (Bonn, April 2004)Dag Endresen
Potential relationship and collaboration between EURISCO and GBIF - a distributed network of databases for the ECP/GR D&I network meeting at ZADI Bonn Germany 11th April 2005. Dag Endresen (Nordic Gene Bank). GBIF is a Global Biodiversity Information Facility for free and open access to biodiversity data.
Introduction to GBIF. GBIF seminar in Bergen. 2016-12-14Dag Endresen
GBIF data publishing seminar at the Department for Biology at the University of Bergen. http://www.gbif.no/events/2016/data-publishing-seminar-in-bergen.html
GBIF data publishing. GBIF seminar in Bergen. 2016-12-14Dag Endresen
GBIF data publishing seminar at the Department for Biology at the University of Bergen. http://www.gbif.no/events/2016/data-publishing-seminar-in-bergen.html
Global Biodiversity Information Facility (GBIF) - 2012Dag Endresen
Presentation of the Global Biodiversity Information Facility (GBIF) and GBIF Norway for the Department of Technical and Scientific Conservation (CONSERV) at the Natural History Museum, University of Oslo. Tøyen, Oslo, 7 November 2012.
Data Exchange Model Of EPGRIS, seminar at the Vavilov Institute in St Petersb...Dag Endresen
Data exchange model of the EPGRIS project for the EURISCO database. The IV annual workshop on documentation problems in the sphere of plant genetic researches. N.I. Vavilov Institute of Plant Industry, St Petersburg March 2002. Dag Endresen (Nordic Gene Bank).
http://vir.nw.ru/
http://eurisco.ecpgr.org/
Jesse Xiao at CODATA2017: Updates to the GigaDB open access data publishing p...GigaScience, BGI Hong Kong
Jesse Xiao at the Data Publishing session at CODATA2017: Updates to the GigaDB open access data publishing platform. Wednesday 11th October in St Petersburg, Russia
Raster data in GeoServer and GeoTools: Achievements, issues and future devel...GeoSolutions
The purpose of this presentation is, on a side, to dissect the developments performed during last year as far as raster data support in GeoTools and GeoServer is concerned, while on the other side to introduce and discuss the future development directions.
Advancements and improvements for the management of raster mosaic and pyramids will be introduced and analyzed, as well as the latest developments for the exploitation of GDAL raster sources.
Extensive details will be provided on the latest updates for the management of multidimensional raster data used in the Remote Sensing and MetOc fields.
The presentation will also introduce and provide updates on the JAITools and ImageIO-Ext projects. JAITools provides a number of new raster data analysis operators, including powerful and fast raster algebra support. ImageIO-Ext bridges the gap across the Java world and native raster data access libraries providing high performance access to GDAL, Kakadu and other libraries.
The presentation will wrap up providing an overview of unresolved issues and challenges that still need to be addressed, suggesting tips and workarounds allowing to leverage the full potential of the systems.
GBIF web services for biodiversity data, for USDA GRIN, Washington DC, USA (2...Dag Endresen
Presentation of GBIF and the sharing of biodiversity data with web services. USDA GRIN Beltsville Washington DC, 13th December 2005. GBIF is the Global Biodiversity Information Facility for free and open access to biodiversity data.
The GoGeo Vision for Repositories (Pecha Kucha) - Tony MathysRepository Fringe
Slides from the Pecha Kucha on "The GoGeo Vision for Repositories" presented by Tony Mathys of EDINA on Thursday 1st August 2013 at Repository Fringe 2013.
Global Information Systems for Plant Genetic Resources (2009)Dag Endresen
Global information systems for plant genetic resources. For the Caucasus germplasm network training course at the Nordic Genetic Resource Center (NordGen), Alnarp Sweden 29th January 2009.
From Buffer-Overflowing Genomic Tools to Securing Biomedical File FormatsCharles Fracchia
DEFCON27 BioHacking Village presentation by Corey Hudson and Charles Fracchia.
In this presentation we describe a previously unreported buffer overflow vulnerability in popular genomics alignment software package BWA. We will show how this exploit, combined with well-known attacks allows an attacker to access and modify patient data and manipulate genomic tests. We then show how this class of attacks constitutes a wider threat to global biomedical infrastructure and what a newly-formed team from Sandia National Labs and BioBright are doing about it.
Speaker Bio: Corey Hudson is a computational biologist at Sandia National Laboratories. Corey leads teams in cybersecurity, machine learning, synthbio and genomics. His main work is modeling and simulating cybersecurity risks in realistic and large-scale genomic systems and highly automated synthbio facilities.
Charles Fracchia is a bioengineer who has worked at the intersection of biology and computer science for the last decade. He is the founder and CEO of BioBright a company dedicated to making biomedical workflows more data-centric and secure.
Prototype germplasm data portal (2006)Dag Endresen
Prototype Germplasm Data Portal, predecessor for the ALIS-Global of the GIGA project. Presentation for the Nordic Gene Bank board meeting on 4th December 2006.
IDB-Cloud Providing Bioinformatics Services on Cloudstratuslab
A presentation of IDB (Infrastructure Distributed for Biology) using StratusLab technology by Christophe Blanchet and Clément Gauthey at Lille, France, May 2013.
Using Fedora Commons To Create A Persistent ArchivePhil Cryer
With the increasing amount of digital data and demand for open access to view and reuse such data continually increasing, the adoption of open source digital repository software is critical for long term storage and management of digital objects. By utilizing the open source Fedora Commons software, the Missouri Botanical Garden has created a stable, persistent archive for Tropicos digital objects, including specimen images, plant photos, and other digital media. Metadata, organized in standard Dublin Core extracted from Tropicos, are stored alongside the digital objects providing search and sharing of data via open standards such as REST and OAI, opening the door for mash-ups and alternative uses. The presentation will cover initial discovery, required hardware and software, and an overview of our experience implementing Fedora Commons. Lessons learned, pros and cons, and other options will also be covered.
Similar to Germplasm data exchange, CGIAR SINGER (2009) (20)
Joint GBIF Biodiversa+ symposium in Helsinki on 2024-04-16Dag Endresen
GBIF Norway contributed to a symposium organized jointly by Biodiversa+ and GBIF, to discuss the requirements for national biodiversity monitoring hubs in the context of proposals for a European Biodiversity Observation Coordination Centre.
Modelling Research Expeditions in Wikidata: Best Practice for Standardisation...Dag Endresen
TDWG 2023 Hobart, 2023-10-10.
Sabine von Mering, Paul Jean-Charles Braun, Robert W. N. Cubey, Quentin Groom, Elspeth M Haston, Annika Hendriksen, Rukaya Johaadien, Siobhan Leachman, Luke Marsden, Heimo Rainer, Joaquim Santos, Dag Endresen. https://doi.org/10.3897/biss.7.111427
See also https://www.wikidata.org/wiki/Wikidata:WikiProject_Research_expeditions
Ontologies for biodiversity informatics, UiO DSC June 2023Dag Endresen
GBIF Norway was invited to the UiO Digital Scholar Centre Data (DSC) Managers Network meeting on 2023-06-08 to present how we use biodiversity ontologies. https://www.gbif.no/news/2023/biodiversity-ontologies.html
The UiO Natural History Museum (GBIF Norway) presented the evacuation of the Kherson herbarium in Ukraine at the 2023 annual conference for the Norwegian Association of Archives. Plenary 2023-06-01.
More information at: https://www.gbif.no/news/2023/privatarkivkonferansen.html
Video at: https://www.gbif.no/news/2023/video/2023-06-kherson-herbarium.mp4
Scientific Advisory Committee (SAC) meeting May 2023 for the Global Information System (GLIS) of the Plant Treaty (ITPGRFA) of the United Nations Food and Agriculture Organization (FAO)
BioDT for the UiO Science section meeting 2023-03-24Dag Endresen
Presentation of the Biodiversity Digital Twin (BioDT) project for the University of Oslo (UiO) Natural History Museum (NHMO) Science department on 2023-03-24.
BioDATA final conference in Oslo, November 2022Dag Endresen
BioDATA – Biodiversity data management skills for students (2018-2022). BioDATA is an international project on developing skills in biodiversity data management and data publishing for undergraduate and postgraduate students from Armenia, Belarus, Norway, Tajikistan, and Ukraine. The project is coordinated by the University of Oslo (Norway) and supported by the Global Biodiversity Information Facility (GBIF). The project is funded by the Directorate for Higher Education and Skills (HKDir). The final closing symposium for all partner universities was organized at the University of Oslo Natural History Museum in Oslo from 11th to 12th November 2022.
GBIF data mobilisation for the Nansen Legacy, Tromsø, 2022-09-20Dag Endresen
Nansen Legacy (Arven etter Nansen, AeN) - Marine data publishing workshop. 3-day workshop to publish marine biodiversity data from the AeN project as Darwin Core Archives on September 20-22, 2022. With support from the Norwegian Global Biodiversity Information Facility (GBIF) node, and the Ocean Biodiversity Information System (OBIS, EurOBIS). https://www.gbif.no/events/2022/nansen-legacy-tromso.html
GBIF at Living Norway Open Science Lab 2022-03-03Dag Endresen
Presentation of GBIF at the Living Norway Open Science Lab on 2022-03-03. See program at
https://livingnorway.no/join-the-living-norway-ecological-data-network-through-our-open-science-lab/
https://livingnorway.no/2022/02/10/join-our-open-science-lab/
https://www.gbif.no/events/2022/open-science-lab-1.html
GBIF & GRScicoll, Høstseminar Norges museumsforbunds Seksjon for natur, 2021-...Dag Endresen
Norges museumsforbunds Seksjon for natur og Naturhistorisk museum ønsker velkommen til Høstseminar! Natur i museum – forskning, formidling og samlinger
24. og 25. november 2021
Dag Endresen (GBIF) (20 min foredrag, 10 min spørsmål)
Digitalisering og GBIF. Registering av samlinger i GrSciColl og Wikidata og publisering av samlingsdata i GBIF.
Råd fra GBIF-Norge til datainfrastrukturutvalget i dialogmøte 2021-11-19Dag Endresen
[Råd 1] Norske forskningsdata bør publiseres i henhold til internasjonale data-standarder. Internasjonale data-standarder sikrer interoperabilitet og reelle muligheter for gjenbruk av data. Etablerte data-standarder innenfor et fagområde gir ofte best effekt for realisert gjenbruk, men kan hindre gjenbruk av data i nye og uforutsette tverrfaglige studier og sammenhenger. Norge bør derfor også bidra til tverrfaglig videreutvikling av interoperabilitet på tvers av data-standarder som er i anvendelse innenfor de enkelte fagområder.
[Råd 2] Måloppnåelse for økt deling av forskningsdata blir enklere med effektive insentiver. Vi tror at etablering av forskningsdata som siterbart vitenskapelig produkt slik som DORA (sfdora.org, 2012) og Force11 (force11.org, 2011) beskriver gir viktige retningslinjer som datainfrastrukturutvalget bør forsøke å integrere i nye Norske retningslinjer.
[Råd 3] Metrikk for å måle gjennomslag og innflytelse (impact) av forskning ("tellekanter") bør utvides til å inkludere metrikk for anerkjennelse av datakilde (data-publikasjon, data-sitering) for både forsker og institusjon. Publisering av forskningsdata bør fortrinnsvis utføres gjennom en profesjonell infrastruktur (slik som GBIF) der opphavsmann og de ulike bidragsytere til produksjon, innsamling, tilretteleggelse, håndtering, og bevaring av data kan registreres. Dataset bør tilordnes stabil digital identitet, gjennom løsninger slik som DOI (digital object identifier). Personer bør knyttes til stabil digital identitet gjennom løsninger slik som ORCID (Open Researcher and Contributor ID, orcid.org). Institusjoner bør knyttes til stabil digital identitet gjennom system løsninger slik som ROR (Research Organization Registry, ror.org).
[Råd 4] Etablering av infrastruktur for forskningsdata tar tid og behøver derfor kontinuitet og forutsigbare rammer, mandat, og langsiktig strategisk investering. Effektiv langsiktig investering i felles internasjonale løsninger krever ofte bedre kontinuitet enn det som er mulig innenfor handlingsrommet for basisfinansiering for enkelte forskningsinstitusjoner og universiteter. Samtidig som felles multi-nasjonal investering i fellesløsninger ofte har en betydelig lavere kostnad enn en alternativ mere fragmentert infrastruktur.
GBIF Norge (GBIF.no) er den norske deltagernoden i Global Biodiversity Information Facility (GBIF.org). GBIF er en internasjonal organisasjon som arbeider for fri og åpen tilgang til globalt dekkende informasjon om biologisk mangfold. GBIF ble etablert i 2001 etter en beslutning i OECDs Science Forum i 1999. Norge ble medlem av GBIF i 2004 og den norske deltagernoden, GBIF Norge, ble etablert med sekretariat ved Universitet i Oslo Naturhistorisk Museum i nært samarbeid med Artsdatabanken og med finansiering fra Forskningsrådet. GBIF Norges mandat omfatter nasjonal deltagelse i GBIF med internasjonal publisering av norske artsdata i henhold til internasjonale data-standarder som er forvaltet av GBIF.
Lecture for a course at NTNU, 27th January 2021
CC-BY 4.0 Dag Endresen https://orcid.org/0000-0002-2352-5497
See also http://bit.ly/biodiversityinformatics
https://www.gbif.no/events/2021/lecture-ntnu-gbif.html
BioDATA capacity enhancement curriculum at GBIF GB26 Global Nodes Meeting in ...Dag Endresen
BioDATA Biodiversity Data for Internationalization in Higher Education is funded by the Norwegian Agency for International Cooperation and Quality Enhancement in Higher Education (DIKU) -- and is based on reusing training materials from the GBIF Biodiversity Information for Development (BID) program funded by the European Commission.
GBIF-Norway node story lightning talk at GB26 in Leiden, October 2019Dag Endresen
The Nodes training at the start of the Nodes meeting focussed on Nodes strategies, administration, and governance tools. Some of the nodes stories were presented at the Global Nodes Meeting. Norway has an operational GBIF Node providing nationally important data pathways that are very well integrated into national information systems. However, there is not yet any solution in place for funding after 2019. In less than 3 months the node might be left without any node budget. Unfortunately, this is a situation far too many of the GBIF Nodes recognize alarmingly well - if they even have any appropriate node budget at all.
Smart TV Buyer Insights Survey 2024 by 91mobiles.pdf91mobiles
91mobiles recently conducted a Smart TV Buyer Insights Survey in which we asked over 3,000 respondents about the TV they own, aspects they look at on a new TV, and their TV buying preferences.
PHP Frameworks: I want to break free (IPC Berlin 2024)Ralf Eggert
In this presentation, we examine the challenges and limitations of relying too heavily on PHP frameworks in web development. We discuss the history of PHP and its frameworks to understand how this dependence has evolved. The focus will be on providing concrete tips and strategies to reduce reliance on these frameworks, based on real-world examples and practical considerations. The goal is to equip developers with the skills and knowledge to create more flexible and future-proof web applications. We'll explore the importance of maintaining autonomy in a rapidly changing tech landscape and how to make informed decisions in PHP development.
This talk is aimed at encouraging a more independent approach to using PHP frameworks, moving towards a more flexible and future-proof approach to PHP development.
Essentials of Automations: Optimizing FME Workflows with ParametersSafe Software
Are you looking to streamline your workflows and boost your projects’ efficiency? Do you find yourself searching for ways to add flexibility and control over your FME workflows? If so, you’re in the right place.
Join us for an insightful dive into the world of FME parameters, a critical element in optimizing workflow efficiency. This webinar marks the beginning of our three-part “Essentials of Automation” series. This first webinar is designed to equip you with the knowledge and skills to utilize parameters effectively: enhancing the flexibility, maintainability, and user control of your FME projects.
Here’s what you’ll gain:
- Essentials of FME Parameters: Understand the pivotal role of parameters, including Reader/Writer, Transformer, User, and FME Flow categories. Discover how they are the key to unlocking automation and optimization within your workflows.
- Practical Applications in FME Form: Delve into key user parameter types including choice, connections, and file URLs. Allow users to control how a workflow runs, making your workflows more reusable. Learn to import values and deliver the best user experience for your workflows while enhancing accuracy.
- Optimization Strategies in FME Flow: Explore the creation and strategic deployment of parameters in FME Flow, including the use of deployment and geometry parameters, to maximize workflow efficiency.
- Pro Tips for Success: Gain insights on parameterizing connections and leveraging new features like Conditional Visibility for clarity and simplicity.
We’ll wrap up with a glimpse into future webinars, followed by a Q&A session to address your specific questions surrounding this topic.
Don’t miss this opportunity to elevate your FME expertise and drive your projects to new heights of efficiency.
Let's dive deeper into the world of ODC! Ricardo Alves (OutSystems) will join us to tell all about the new Data Fabric. After that, Sezen de Bruijn (OutSystems) will get into the details on how to best design a sturdy architecture within ODC.
Search and Society: Reimagining Information Access for Radical FuturesBhaskar Mitra
The field of Information retrieval (IR) is currently undergoing a transformative shift, at least partly due to the emerging applications of generative AI to information access. In this talk, we will deliberate on the sociotechnical implications of generative AI for information access. We will argue that there is both a critical necessity and an exciting opportunity for the IR community to re-center our research agendas on societal needs while dismantling the artificial separation between the work on fairness, accountability, transparency, and ethics in IR and the rest of IR research. Instead of adopting a reactionary strategy of trying to mitigate potential social harms from emerging technologies, the community should aim to proactively set the research agenda for the kinds of systems we should build inspired by diverse explicitly stated sociotechnical imaginaries. The sociotechnical imaginaries that underpin the design and development of information access technologies needs to be explicitly articulated, and we need to develop theories of change in context of these diverse perspectives. Our guiding future imaginaries must be informed by other academic fields, such as democratic theory and critical theory, and should be co-developed with social science scholars, legal scholars, civil rights and social justice activists, and artists, among others.
Neuro-symbolic is not enough, we need neuro-*semantic*Frank van Harmelen
Neuro-symbolic (NeSy) AI is on the rise. However, simply machine learning on just any symbolic structure is not sufficient to really harvest the gains of NeSy. These will only be gained when the symbolic structures have an actual semantics. I give an operational definition of semantics as “predictable inference”.
All of this illustrated with link prediction over knowledge graphs, but the argument is general.
UiPath Test Automation using UiPath Test Suite series, part 4DianaGray10
Welcome to UiPath Test Automation using UiPath Test Suite series part 4. In this session, we will cover Test Manager overview along with SAP heatmap.
The UiPath Test Manager overview with SAP heatmap webinar offers a concise yet comprehensive exploration of the role of a Test Manager within SAP environments, coupled with the utilization of heatmaps for effective testing strategies.
Participants will gain insights into the responsibilities, challenges, and best practices associated with test management in SAP projects. Additionally, the webinar delves into the significance of heatmaps as a visual aid for identifying testing priorities, areas of risk, and resource allocation within SAP landscapes. Through this session, attendees can expect to enhance their understanding of test management principles while learning practical approaches to optimize testing processes in SAP environments using heatmap visualization techniques
What will you get from this session?
1. Insights into SAP testing best practices
2. Heatmap utilization for testing
3. Optimization of testing processes
4. Demo
Topics covered:
Execution from the test manager
Orchestrator execution result
Defect reporting
SAP heatmap example with demo
Speaker:
Deepak Rai, Automation Practice Lead, Boundaryless Group and UiPath MVP
GDG Cloud Southlake #33: Boule & Rebala: Effective AppSec in SDLC using Deplo...James Anderson
Effective Application Security in Software Delivery lifecycle using Deployment Firewall and DBOM
The modern software delivery process (or the CI/CD process) includes many tools, distributed teams, open-source code, and cloud platforms. Constant focus on speed to release software to market, along with the traditional slow and manual security checks has caused gaps in continuous security as an important piece in the software supply chain. Today organizations feel more susceptible to external and internal cyber threats due to the vast attack surface in their applications supply chain and the lack of end-to-end governance and risk management.
The software team must secure its software delivery process to avoid vulnerability and security breaches. This needs to be achieved with existing tool chains and without extensive rework of the delivery processes. This talk will present strategies and techniques for providing visibility into the true risk of the existing vulnerabilities, preventing the introduction of security issues in the software, resolving vulnerabilities in production environments quickly, and capturing the deployment bill of materials (DBOM).
Speakers:
Bob Boule
Robert Boule is a technology enthusiast with PASSION for technology and making things work along with a knack for helping others understand how things work. He comes with around 20 years of solution engineering experience in application security, software continuous delivery, and SaaS platforms. He is known for his dynamic presentations in CI/CD and application security integrated in software delivery lifecycle.
Gopinath Rebala
Gopinath Rebala is the CTO of OpsMx, where he has overall responsibility for the machine learning and data processing architectures for Secure Software Delivery. Gopi also has a strong connection with our customers, leading design and architecture for strategic implementations. Gopi is a frequent speaker and well-known leader in continuous delivery and integrating security into software delivery.
"Impact of front-end architecture on development cost", Viktor TurskyiFwdays
I have heard many times that architecture is not important for the front-end. Also, many times I have seen how developers implement features on the front-end just following the standard rules for a framework and think that this is enough to successfully launch the project, and then the project fails. How to prevent this and what approach to choose? I have launched dozens of complex projects and during the talk we will analyze which approaches have worked for me and which have not.
Epistemic Interaction - tuning interfaces to provide information for AI supportAlan Dix
Paper presented at SYNERGY workshop at AVI 2024, Genoa, Italy. 3rd June 2024
https://alandix.com/academic/papers/synergy2024-epistemic/
As machine learning integrates deeper into human-computer interactions, the concept of epistemic interaction emerges, aiming to refine these interactions to enhance system adaptability. This approach encourages minor, intentional adjustments in user behaviour to enrich the data available for system learning. This paper introduces epistemic interaction within the context of human-system communication, illustrating how deliberate interaction design can improve system understanding and adaptation. Through concrete examples, we demonstrate the potential of epistemic interaction to significantly advance human-computer interaction by leveraging intuitive human communication strategies to inform system design and functionality, offering a novel pathway for enriching user-system engagements.
Key Trends Shaping the Future of Infrastructure.pdfCheryl Hung
Keynote at DIGIT West Expo, Glasgow on 29 May 2024.
Cheryl Hung, ochery.com
Sr Director, Infrastructure Ecosystem, Arm.
The key trends across hardware, cloud and open-source; exploring how these areas are likely to mature and develop over the short and long-term, and then considering how organisations can position themselves to adapt and thrive.
Empowering NextGen Mobility via Large Action Model Infrastructure (LAMI): pav...
Germplasm data exchange, CGIAR SINGER (2009)
1. Data exchange alternatives GBIF Tools and Darwin Core germplasm extension Cartoon by Sasha Kopf (Creative Commons) SINGER GPG2 Consultation Meeting, USDA, Washington DC Dag Terje Filip Endresen, Nordic Genetic Resources Center, NordGen (Sweden)
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5. GBIF IPT The GBIF IPT service comes with a graphical interface to explore the datasets published. The visitor may explore the dataset from the map, different pie charts, or the right side context menu (taxonomy and geography). 3
6. IPT Using GBIF technology (and contributing to its development), the PGR community can easily establish specific PGR networks without duplicating GBIF's work. The compatibility of data standards between PGR and biodiversity collections made it possible to integrate the worldwide germplasm collections into the biodiversity community (GBIF, TDWG). 4
7. GBIF IPT GBIF IPT implements the Darwin Core Standard; and provides an interface to easily build extensions to the core Darwin Core terms. The draft germplasm extension is one example of how-to extend the Darwin Core terms for the GBIF IPT. http://atlas.nordgen.org/rs/ipt/ipt_germplasm.xml http://code.google.com/p/darwincore/source/browse/trunk/xsd/profiles/germplasm/dwc_germplasm.xsd 5
8. Darwin Core A new version of Darwin Core is up for public review. http://rs.tdwg.org/dwc/terms/index.htm TDWG 2009, Montpellier, November 9 -13 DRAFT Germplasm extension http://code.google.com/p/darwincore/source/browse/#svn/trunk/xsd/profiles/germplasm Please consider to contribute! RDF, LSID, ontology friendly 6
9. GBIF PGR Network 2 PGR GBIF network Use of GBIF technology and integration of PGR collection data into GBIF allows PGR users to simultaneously search PGR collections and other biodiversity collections, and to get access to the data (and possibly the material) of relevant biodiversity collections. [http://data.gbif.org/datasets/network/2] 7