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140712 antabif egbamm

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Bruno Danis
Bruno Danis

Presentation given at the Expert Group on Birds and Marine Mammals at the SCAR Open Science Conference.

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ANTABIF: EGBAMM, 2012 Antarctic Biodiversity Information Facility Saturday 14 July 12
Our vision: Antarctic biodiversity data are open, linked, useful, interoperable and safe. Saturday 14 July 12
What’s ANTABIF? David B, Danis B, Griffiths HJ Saturday 14 July 12
What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component David B, Danis B, Griffiths HJ Saturday 14 July 12
What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography David B, Danis B, Griffiths HJ Saturday 14 July 12
What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects David B, Danis B, Griffiths HJ Saturday 14 July 12
What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management David B, Danis B, Griffiths HJ Saturday 14 July 12
What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management • Networked community developments David B, Danis B, Griffiths HJ Saturday 14 July 12
What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management • Networked community developments • Scientific impact: Citations : 423, Publications: 58, H-Index: 11 David B, Danis B, Griffiths HJ Saturday 14 July 12
What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management • Networked community developments • Scientific impact: Citations : 423, Publications: 58, H-Index: 11 David B, Danis B, Griffiths HJ Saturday 14 July 12
Progress: Taxonomy 17,098 taxa The first dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life Saturday 14 July 12
Progress: Taxonomy 17,098 taxa The first dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life Saturday 14 July 12
Progress: Biogeography • Single access to 900 datasets • 2.5 million records • Data back to 1900 (Pygoscelis adeliae) • Spatial data on over 5000 taxa • Downloadable • Interoperable • Free and open Saturday 14 July 12
Progress: Biogeography • Single access to 900 datasets • 2.5 million records • Data back to 1900 (Pygoscelis adeliae) • Spatial data on over 5000 taxa • Downloadable • Interoperable • Free and open Saturday 14 July 12
progress: ANTABIF Architecture Saturday 14 July 12
progress: ANTABIF Architecture • www.biodiversity.aq Saturday 14 July 12
progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq Saturday 14 July 12
progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq Saturday 14 July 12
progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq Saturday 14 July 12
progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq Saturday 14 July 12
progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq Saturday 14 July 12
progress: ANTABIF Architecture Promote)the)communit • www.biodiversity.aq MODULAR development)of)N ARCHITECTURE • data.biodiversity.aq •  GBIF)promotes)training)and)us • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF Saturday 14 July 12
progress: ANTABIF Architecture Nodes)Investment)in)new)func@onality) Promote)the)communit • •  www.biodiversity.aq MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE • data.biodiversity.aq •  GBIF)promotes)training)and)us Data discovery A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF Saturday 14 July 12
progress: ANTABIF Architecture Nodes)Investment)in)new)func@onality) Promote)the)communit Nodes)Investment)in)new)func@ona • •  www.biodiversity.aq MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE •  Nodes)extend)the)plaGorm)with)new)mod •  GBIF)promotes)training)and)us • data.biodiversity.aq Data discovery A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) Data visualization A)module)we)all)need) A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF Saturday 14 July 12
progress: ANTABIF Architecture Nodes)Investment)in)new)func@onality) NPT)can)be)extended)by)crea@ng)an Promote)the)communit Nodes)Investment)in)new)func@ona • •  www.biodiversity.aq installing)Modules) MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE •  Nodes)extend)the)plaGorm)with)new)mod •  GBIF)promotes)training)and)us • data.biodiversity.aq Data discovery Data products A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) Data visualization A)module)we)all)need) A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF Saturday 14 July 12
data.biodiversity.aq • data discovery interface • visualize occurrence data on map • view taxonomic data • download data • view metrics • send feedback • access technical documentation Saturday 14 July 12
Data flow (user’s point of view) Your data DwC-A IPT ANTABIF standardize upload publish publish Data Paper Saturday 14 July 12
Saturday 14 July 12
Saturday 14 July 12
Saturday 14 July 12
Saturday 14 July 12
Saturday 14 July 12
Saturday 14 July 12
Saturday 14 July 12
Saturday 14 July 12
ipt.biodiversity.aq • Integrated Publishing Toolkit • standardize and clean your data • manage primary biodiversity data • manage associated metadata • choose collaborators • generate and submit a Data Paper • push data and metadata to Information Systems Saturday 14 July 12
ipt.biodiversity.aq Saturday 14 July 12
ipt. biodiversity.aq Saturday 14 July 12
ipt. biodiversity.aq Saturday 14 July 12
ipt. biodiversity.aq Saturday 14 July 12
ipt. biodiversity.aq Saturday 14 July 12
Reward data publishing Metadata document Data Paper Saturday 14 July 12
Proof of concept Saturday 14 July 12
Proof of concept Saturday 14 July 12
Proof of concept Saturday 14 July 12
Proof of concept ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys- tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Saturday 14 July 12
Proof of concept ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Impact Factor: 0.514 Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys- tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Saturday 14 July 12
afg. biodiversity.aq • Identification aid • High quality (useful) pictures • Expert Descriptions • Built on-the-fly from various sources • Generates a pdf for taxa/area of interest Saturday 14 July 12
afg. biodiversity.aq Saturday 14 July 12
afg. biodiversity.aq Saturday 14 July 12
afg. biodiversity.aq Saturday 14 July 12
atlas.biodiversity.aq Saturday 14 July 12
atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean Saturday 14 July 12
atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio Saturday 14 July 12
atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach Saturday 14 July 12
atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach • Static and dynamic versions Saturday 14 July 12
atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach • Static and dynamic versions • Modelization loops are ready Saturday 14 July 12
Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence records Saturday 14 July 12
Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence records Saturday 14 July 12
Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence records Saturday 14 July 12
R-functions GUI for BRT and GDM Saturday 14 July 12
R-functions GUI for BRT and GDM Saturday 14 July 12
atlas.biodiversity.aq Saturday 14 July 12
atlas.biodiversity.aq • Outcomes of the Villefranche workshop Saturday 14 July 12
atlas.biodiversity.aq • Outcomes of the Villefranche workshop • BRT models on 13 spp of penguins and 15 spp of seals (sub-ant and ant) Saturday 14 July 12
atlas.biodiversity.aq • Outcomes of the Villefranche workshop • BRT models on 13 spp of penguins and 15 spp of seals (sub-ant and ant) • Some models are doing ok, but needs refinement Saturday 14 July 12
Arctocephalus gazella Arctocephalus.gazella − BRT −40 −50 Arctocephalus.gazella FALSE TRUE pred −60 lat 0.8 0.6 0.4 0.2 −70 −80 −90 −100 0 100 Saturday 14 July 12 lon
Hydrurga leptonyx Hydrurga.leptonyx − BRT −40 −50 pred 0.8 0.6 0.4 −60 lat 0.2 Hydrurga.leptonyx FALSE TRUE −70 −80 −90 −100 0 100 Saturday 14 July 12 lon
Aptenodytes forsteri Aptenodytes.forsteri − BRT −40 −50 pred 0.8 −60 0.6 0.4 lat 0.2 Aptenodytes.forsteri −70 FALSE TRUE −80 −90 Saturday 14 July 12 −100 0 100
Pygoscelis adeliae Pygoscelis.adeliae − BRT −40 −50 pred 0.8 −60 0.6 0.4 lat 0.2 Pygoscelis.adeliae −70 FALSE TRUE −80 −90 Saturday 14 July 12 −100 0 100
In the pipeline Saturday 14 July 12
atlas.biodiversity.aq Saturday 14 July 12
atlas.biodiversity.aq • Next steps Saturday 14 July 12
atlas.biodiversity.aq • Next steps • Consolidate manuscripts Saturday 14 July 12
atlas.biodiversity.aq • Next steps • Consolidate manuscripts • Refine/select models and outputs Saturday 14 July 12
atlas.biodiversity.aq • Next steps • Consolidate manuscripts • Refine/select models and outputs • Generate final versions of maps Saturday 14 July 12
atlas.biodiversity.aq • Next steps • Consolidate manuscripts • Refine/select models and outputs • Generate final versions of maps • Print Saturday 14 July 12
atlas.biodiversity.aq • Next steps • Consolidate manuscripts • Refine/select models and outputs • Generate final versions of maps • Print • Dynamic version(s) Saturday 14 July 12
Thanks and questions? @biodiversityaq image  ©  NY  Times   Saturday 14 July 12

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140712 antabif egbamm

  • 1. ANTABIF: EGBAMM, 2012 Antarctic Biodiversity Information Facility Saturday 14 July 12
  • 2. Our vision: Antarctic biodiversity data are open, linked, useful, interoperable and safe. Saturday 14 July 12
  • 3. What’s ANTABIF? David B, Danis B, Griffiths HJ Saturday 14 July 12
  • 4. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component David B, Danis B, Griffiths HJ Saturday 14 July 12
  • 5. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography David B, Danis B, Griffiths HJ Saturday 14 July 12
  • 6. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects David B, Danis B, Griffiths HJ Saturday 14 July 12
  • 7. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management David B, Danis B, Griffiths HJ Saturday 14 July 12
  • 8. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management • Networked community developments David B, Danis B, Griffiths HJ Saturday 14 July 12
  • 9. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management • Networked community developments • Scientific impact: Citations : 423, Publications: 58, H-Index: 11 David B, Danis B, Griffiths HJ Saturday 14 July 12
  • 10. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management • Networked community developments • Scientific impact: Citations : 423, Publications: 58, H-Index: 11 David B, Danis B, Griffiths HJ Saturday 14 July 12
  • 11. Progress: Taxonomy 17,098 taxa The first dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life Saturday 14 July 12
  • 12. Progress: Taxonomy 17,098 taxa The first dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life Saturday 14 July 12
  • 13. Progress: Biogeography • Single access to 900 datasets • 2.5 million records • Data back to 1900 (Pygoscelis adeliae) • Spatial data on over 5000 taxa • Downloadable • Interoperable • Free and open Saturday 14 July 12
  • 14. Progress: Biogeography • Single access to 900 datasets • 2.5 million records • Data back to 1900 (Pygoscelis adeliae) • Spatial data on over 5000 taxa • Downloadable • Interoperable • Free and open Saturday 14 July 12
  • 16. progress: ANTABIF Architecture • www.biodiversity.aq Saturday 14 July 12
  • 17. progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq Saturday 14 July 12
  • 18. progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq Saturday 14 July 12
  • 19. progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq Saturday 14 July 12
  • 20. progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq Saturday 14 July 12
  • 21. progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq Saturday 14 July 12
  • 22. progress: ANTABIF Architecture Promote)the)communit • www.biodiversity.aq MODULAR development)of)N ARCHITECTURE • data.biodiversity.aq •  GBIF)promotes)training)and)us • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF Saturday 14 July 12
  • 23. progress: ANTABIF Architecture Nodes)Investment)in)new)func@onality) Promote)the)communit • •  www.biodiversity.aq MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE • data.biodiversity.aq •  GBIF)promotes)training)and)us Data discovery A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF Saturday 14 July 12
  • 24. progress: ANTABIF Architecture Nodes)Investment)in)new)func@onality) Promote)the)communit Nodes)Investment)in)new)func@ona • •  www.biodiversity.aq MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE •  Nodes)extend)the)plaGorm)with)new)mod •  GBIF)promotes)training)and)us • data.biodiversity.aq Data discovery A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) Data visualization A)module)we)all)need) A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF Saturday 14 July 12
  • 25. progress: ANTABIF Architecture Nodes)Investment)in)new)func@onality) NPT)can)be)extended)by)crea@ng)an Promote)the)communit Nodes)Investment)in)new)func@ona • •  www.biodiversity.aq installing)Modules) MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE •  Nodes)extend)the)plaGorm)with)new)mod •  GBIF)promotes)training)and)us • data.biodiversity.aq Data discovery Data products A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) Data visualization A)module)we)all)need) A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIF Saturday 14 July 12
  • 26. data.biodiversity.aq • data discovery interface • visualize occurrence data on map • view taxonomic data • download data • view metrics • send feedback • access technical documentation Saturday 14 July 12
  • 27. Data flow (user’s point of view) Your data DwC-A IPT ANTABIF standardize upload publish publish Data Paper Saturday 14 July 12
  • 36. ipt.biodiversity.aq • Integrated Publishing Toolkit • standardize and clean your data • manage primary biodiversity data • manage associated metadata • choose collaborators • generate and submit a Data Paper • push data and metadata to Information Systems Saturday 14 July 12
  • 42. Reward data publishing Metadata document Data Paper Saturday 14 July 12
  • 46. Proof of concept ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys- tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Saturday 14 July 12
  • 47. Proof of concept ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Impact Factor: 0.514 Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys- tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Saturday 14 July 12
  • 48. afg. biodiversity.aq • Identification aid • High quality (useful) pictures • Expert Descriptions • Built on-the-fly from various sources • Generates a pdf for taxa/area of interest Saturday 14 July 12
  • 53. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean Saturday 14 July 12
  • 54. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio Saturday 14 July 12
  • 55. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach Saturday 14 July 12
  • 56. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach • Static and dynamic versions Saturday 14 July 12
  • 57. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach • Static and dynamic versions • Modelization loops are ready Saturday 14 July 12
  • 58. Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence records Saturday 14 July 12
  • 59. Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence records Saturday 14 July 12
  • 60. Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence records Saturday 14 July 12
  • 61. R-functions GUI for BRT and GDM Saturday 14 July 12
  • 62. R-functions GUI for BRT and GDM Saturday 14 July 12
  • 64. atlas.biodiversity.aq • Outcomes of the Villefranche workshop Saturday 14 July 12
  • 65. atlas.biodiversity.aq • Outcomes of the Villefranche workshop • BRT models on 13 spp of penguins and 15 spp of seals (sub-ant and ant) Saturday 14 July 12
  • 66. atlas.biodiversity.aq • Outcomes of the Villefranche workshop • BRT models on 13 spp of penguins and 15 spp of seals (sub-ant and ant) • Some models are doing ok, but needs refinement Saturday 14 July 12
  • 67. Arctocephalus gazella Arctocephalus.gazella − BRT −40 −50 Arctocephalus.gazella FALSE TRUE pred −60 lat 0.8 0.6 0.4 0.2 −70 −80 −90 −100 0 100 Saturday 14 July 12 lon
  • 68. Hydrurga leptonyx Hydrurga.leptonyx − BRT −40 −50 pred 0.8 0.6 0.4 −60 lat 0.2 Hydrurga.leptonyx FALSE TRUE −70 −80 −90 −100 0 100 Saturday 14 July 12 lon
  • 69. Aptenodytes forsteri Aptenodytes.forsteri − BRT −40 −50 pred 0.8 −60 0.6 0.4 lat 0.2 Aptenodytes.forsteri −70 FALSE TRUE −80 −90 Saturday 14 July 12 −100 0 100
  • 70. Pygoscelis adeliae Pygoscelis.adeliae − BRT −40 −50 pred 0.8 −60 0.6 0.4 lat 0.2 Pygoscelis.adeliae −70 FALSE TRUE −80 −90 Saturday 14 July 12 −100 0 100
  • 73. atlas.biodiversity.aq • Next steps Saturday 14 July 12
  • 74. atlas.biodiversity.aq • Next steps • Consolidate manuscripts Saturday 14 July 12
  • 75. atlas.biodiversity.aq • Next steps • Consolidate manuscripts • Refine/select models and outputs Saturday 14 July 12
  • 76. atlas.biodiversity.aq • Next steps • Consolidate manuscripts • Refine/select models and outputs • Generate final versions of maps Saturday 14 July 12
  • 77. atlas.biodiversity.aq • Next steps • Consolidate manuscripts • Refine/select models and outputs • Generate final versions of maps • Print Saturday 14 July 12
  • 78. atlas.biodiversity.aq • Next steps • Consolidate manuscripts • Refine/select models and outputs • Generate final versions of maps • Print • Dynamic version(s) Saturday 14 July 12
  • 79. Thanks and questions? @biodiversityaq image  ©  NY  Times   Saturday 14 July 12