ANTABIF:      DryValleys, 2012      Antarctic Biodiversity Information FacilitySunday 15 July 12
Our vision:       Antarctic biodiversity data are       open, linked, useful, interoperable and safe.Sunday 15 July 12
What’s ANTABIF?                         David B, Danis B, Griffiths HJSunday 15 July 12
What’s ANTABIF?       • Born as Census of Antarctic Marine Life         as the data, visualization and analysis         co...
What’s ANTABIF?       • Born as Census of Antarctic Marine Life         as the data, visualization and analysis         co...
What’s ANTABIF?       • Born as Census of Antarctic Marine Life         as the data, visualization and analysis         co...
What’s ANTABIF?       • Born as Census of Antarctic Marine Life         as the data, visualization and analysis         co...
What’s ANTABIF?       • Born as Census of Antarctic Marine Life         as the data, visualization and analysis         co...
What’s ANTABIF?       • Born as Census of Antarctic Marine Life         as the data, visualization and analysis         co...
What’s ANTABIF?       • Born as Census of Antarctic Marine Life         as the data, visualization and analysis         co...
Progress: Taxonomy                                           17,098 taxa      The first dynamic Register of Antarctic Marin...
Progress: Taxonomy                                           17,098 taxa      The first dynamic Register of Antarctic Marin...
Progress:       Biogeography       • Single access to 900 datasets       • 2.5 million records       • Data back to 1900 (...
Progress:       Biogeography       • Single access to 900 datasets       • 2.5 million records       • Data back to 1900 (...
progress: ANTABIF ArchitectureSunday 15 July 12
progress: ANTABIF Architecture                    • www.biodiversity.aqSunday 15 July 12
progress: ANTABIF Architecture                    • www.biodiversity.aq                    • data.biodiversity.aqSunday 15...
progress: ANTABIF Architecture                    • www.biodiversity.aq                    • data.biodiversity.aq         ...
progress: ANTABIF Architecture                    • www.biodiversity.aq                    • data.biodiversity.aq         ...
progress: ANTABIF Architecture                    • www.biodiversity.aq                    • data.biodiversity.aq         ...
progress: ANTABIF Architecture                    • www.biodiversity.aq                    • data.biodiversity.aq         ...
progress: ANTABIF Architecture                                                 Promote)the)communit                    • w...
progress: ANTABIF Architecture                     Nodes)Investment)in)new)func@onality)                                  ...
progress: ANTABIF Architecture                     Nodes)Investment)in)new)func@onality)                                  ...
progress: ANTABIF Architecture                     Nodes)Investment)in)new)func@onality)                                  ...
data.biodiversity.aq                    • data discovery interface                    • visualize occurrence data on map  ...
Data flow                                  (user’s point of view)  Your data                       DwC-A             IPT   ...
Sunday 15 July 12
Sunday 15 July 12
Sunday 15 July 12
Sunday 15 July 12
Sunday 15 July 12
Sunday 15 July 12
Sunday 15 July 12
Sunday 15 July 12
ipt.biodiversity.aq                    • Integrated Publishing Toolkit                    • standardize and clean your dat...
ipt.biodiversity.aqSunday 15 July 12
ipt. biodiversity.aqSunday 15 July 12
ipt. biodiversity.aqSunday 15 July 12
ipt. biodiversity.aqSunday 15 July 12
ipt. biodiversity.aqSunday 15 July 12
Reward data publishing                    Metadata document   Data PaperSunday 15 July 12
Proof of conceptSunday 15 July 12
Proof of conceptSunday 15 July 12
Proof of conceptSunday 15 July 12
Proof of concept                       ZooKeys 185: 73–78 (2012)                                        Antarctic Starfish...
Proof of concept       ZooKeys 185: 73–78 (2012)                                                            Antarctic Star...
afg. biodiversity.aq                    • Identification aid                    • High quality (useful) pictures           ...
afg. biodiversity.aqSunday 15 July 12
afg. biodiversity.aqSunday 15 July 12
afg. biodiversity.aqSunday 15 July 12
atlas.biodiversity.aqSunday 15 July 12
atlas.biodiversity.aq       • Biogeographic Atlas of the Southern OceanSunday 15 July 12
atlas.biodiversity.aq       • Biogeographic Atlas of the Southern Ocean       • Redo of Hedgepeth 1969 FolioSunday 15 July...
atlas.biodiversity.aq       • Biogeographic Atlas of the Southern Ocean       • Redo of Hedgepeth 1969 Folio       • Predi...
atlas.biodiversity.aq       • Biogeographic Atlas of the Southern Ocean       • Redo of Hedgepeth 1969 Folio       • Predi...
atlas.biodiversity.aq       • Biogeographic Atlas of the Southern Ocean       • Redo of Hedgepeth 1969 Folio       • Predi...
Slope                    94 Interpolated data layers   Bathymetry                                                  Chlorop...
Slope                    94 Interpolated data layers   Bathymetry                                                  Chlorop...
Slope                    94 Interpolated data layers   Bathymetry                                                  Chlorop...
R-functions GUI for BRT                           and GDMSunday 15 July 12
R-functions GUI for BRT                           and GDMSunday 15 July 12
mARS.biodiversity.aqSunday 15 July 12
mARS.biodiversity.aq       • Microbial Antarctic Resource SystemSunday 15 July 12
mARS.biodiversity.aq       • Microbial Antarctic Resource System       • The organisms are small… but their environmental ...
mARS.biodiversity.aq       • Microbial Antarctic Resource System       • The organisms are small… but their environmental ...
mARS.biodiversity.aq       • Microbial Antarctic Resource System       • The organisms are small… but their environmental ...
mars.biodiversity.aqSunday 15 July 12
mars.biodiversity.aq       • Integrate Antarctic microbial DNA sequence data in ANTABIFSunday 15 July 12
mars.biodiversity.aq       • Integrate Antarctic microbial DNA sequence data in ANTABIF       • Phased approach:Sunday 15 ...
mars.biodiversity.aq       • Integrate Antarctic microbial DNA sequence data in ANTABIF       • Phased approach:          ...
mars.biodiversity.aq       • Integrate Antarctic microbial DNA sequence data in ANTABIF       • Phased approach:          ...
mars.biodiversity.aq       • Integrate Antarctic microbial DNA sequence data in ANTABIF       • Phased approach:          ...
mars.biodiversity.aq       • Integrate Antarctic microbial DNA sequence data in ANTABIF       • Phased approach:          ...
mars.biodiversity.aq       • Integrate Antarctic microbial DNA sequence data in ANTABIF       • Phased approach:          ...
mARS.biodiversity.aqSunday 15 July 12
mARS.biodiversity.aq       • Potential applications:Sunday 15 July 12
mARS.biodiversity.aq       • Potential applications:                    Is there a biogeography of Antarctic microbes?Sund...
mARS.biodiversity.aq       • Potential applications:                    Is there a biogeography of Antarctic microbes?    ...
mARS.biodiversity.aq       • Potential applications:                    Is there a biogeography of Antarctic microbes?    ...
In the pipelineSunday 15 July 12
in the pipeline                    • Interactive Identification keys                    • Spatially explicit gazetteer     ...
Thanks and questions?                     @biodiversityaq                         image	  ©	  NY	  Times	  Sunday 15 July 12
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150712 antabif dry_valleys

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Presentation given at the Dry Valleys workshop, in the framework of the 2012 SCAR Open Science Conference. @biodiversityaq

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150712 antabif dry_valleys

  1. 1. ANTABIF: DryValleys, 2012 Antarctic Biodiversity Information FacilitySunday 15 July 12
  2. 2. Our vision: Antarctic biodiversity data are open, linked, useful, interoperable and safe.Sunday 15 July 12
  3. 3. What’s ANTABIF? David B, Danis B, Griffiths HJSunday 15 July 12
  4. 4. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component David B, Danis B, Griffiths HJSunday 15 July 12
  5. 5. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography David B, Danis B, Griffiths HJSunday 15 July 12
  6. 6. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects David B, Danis B, Griffiths HJSunday 15 July 12
  7. 7. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management David B, Danis B, Griffiths HJSunday 15 July 12
  8. 8. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management • Networked community developments David B, Danis B, Griffiths HJSunday 15 July 12
  9. 9. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management • Networked community developments • Scientific impact: Citations : 423, Publications: 58, H-Index: 11 David B, Danis B, Griffiths HJSunday 15 July 12
  10. 10. What’s ANTABIF? • Born as Census of Antarctic Marine Life as the data, visualization and analysis component • Free and open access to biodiversity data: taxonomy and biogeography • SCAR-MarBIN => ANTABIF projects • Science, conservation and management • Networked community developments • Scientific impact: Citations : 423, Publications: 58, H-Index: 11 David B, Danis B, Griffiths HJSunday 15 July 12
  11. 11. Progress: Taxonomy 17,098 taxa The first dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of LifeSunday 15 July 12
  12. 12. Progress: Taxonomy 17,098 taxa The first dynamic Register of Antarctic Marine Species Taxonomic backbone Board of 64 editors Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of LifeSunday 15 July 12
  13. 13. Progress: Biogeography • Single access to 900 datasets • 2.5 million records • Data back to 1900 (Pygoscelis adeliae) • Spatial data on over 5000 taxa • Downloadable • Interoperable • Free and openSunday 15 July 12
  14. 14. Progress: Biogeography • Single access to 900 datasets • 2.5 million records • Data back to 1900 (Pygoscelis adeliae) • Spatial data on over 5000 taxa • Downloadable • Interoperable • Free and openSunday 15 July 12
  15. 15. progress: ANTABIF ArchitectureSunday 15 July 12
  16. 16. progress: ANTABIF Architecture • www.biodiversity.aqSunday 15 July 12
  17. 17. progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aqSunday 15 July 12
  18. 18. progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aqSunday 15 July 12
  19. 19. progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aqSunday 15 July 12
  20. 20. progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aqSunday 15 July 12
  21. 21. progress: ANTABIF Architecture • www.biodiversity.aq • data.biodiversity.aq • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aqSunday 15 July 12
  22. 22. progress: ANTABIF Architecture Promote)the)communit • www.biodiversity.aq MODULAR development)of)N ARCHITECTURE • data.biodiversity.aq •  GBIF)promotes)training)and)us • ipt.biodiversity.aq • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIFSunday 15 July 12
  23. 23. progress: ANTABIF Architecture Nodes)Investment)in)new)func@onality) Promote)the)communit • •  www.biodiversity.aq MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE • data.biodiversity.aq •  GBIF)promotes)training)and)us Data discovery A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIFSunday 15 July 12
  24. 24. progress: ANTABIF Architecture Nodes)Investment)in)new)func@onality) Promote)the)communit Nodes)Investment)in)new)func@ona • •  www.biodiversity.aq MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE •  Nodes)extend)the)plaGorm)with)new)mod •  GBIF)promotes)training)and)us • data.biodiversity.aq Data discovery A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) Data visualization A)module)we)all)need) A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIFSunday 15 July 12
  25. 25. progress: ANTABIF Architecture Nodes)Investment)in)new)func@onality) NPT)can)be)extended)by)crea@ng)an Promote)the)communit Nodes)Investment)in)new)func@ona • •  www.biodiversity.aq installing)Modules) MODULAR development)of)N Nodes)extend)the)plaGorm)with)new)modules) ARCHITECTURE •  Nodes)extend)the)plaGorm)with)new)mod •  GBIF)promotes)training)and)us • data.biodiversity.aq Data discovery Data products A)module)we)all)need) • ipt.biodiversity.aq A)module)I)need) Data visualization A)module)we)all)need) A)module)I)need) • afg.biodiversity.aq • atlas.biodiversity.aq • mars.biodiversity.aq ANTABIFSunday 15 July 12
  26. 26. data.biodiversity.aq • data discovery interface • visualize occurrence data on map • view taxonomic data • download data • view metrics • send feedback • access technical documentationSunday 15 July 12
  27. 27. Data flow (user’s point of view) Your data DwC-A IPT ANTABIF standardize upload publish publish Data PaperSunday 15 July 12
  28. 28. Sunday 15 July 12
  29. 29. Sunday 15 July 12
  30. 30. Sunday 15 July 12
  31. 31. Sunday 15 July 12
  32. 32. Sunday 15 July 12
  33. 33. Sunday 15 July 12
  34. 34. Sunday 15 July 12
  35. 35. Sunday 15 July 12
  36. 36. ipt.biodiversity.aq • Integrated Publishing Toolkit • standardize and clean your data • manage primary biodiversity data • manage associated metadata • choose collaborators • generate and submit a Data Paper • push data and metadata to Information SystemsSunday 15 July 12
  37. 37. ipt.biodiversity.aqSunday 15 July 12
  38. 38. ipt. biodiversity.aqSunday 15 July 12
  39. 39. ipt. biodiversity.aqSunday 15 July 12
  40. 40. ipt. biodiversity.aqSunday 15 July 12
  41. 41. ipt. biodiversity.aqSunday 15 July 12
  42. 42. Reward data publishing Metadata document Data PaperSunday 15 July 12
  43. 43. Proof of conceptSunday 15 July 12
  44. 44. Proof of conceptSunday 15 July 12
  45. 45. Proof of conceptSunday 15 July 12
  46. 46. Proof of concept ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys- tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.Sunday 15 July 12
  47. 47. Proof of concept ZooKeys 185: 73–78 (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition doi: 10.3897/zookeys.185.3078 DAtA PAPEr A peer-reviewed open-access journal 73 www.zookeys.org Launched to accelerate biodiversity research Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition Impact Factor: 0.514 Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2 1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium Corresponding author: Bruno Danis (bruno.danis@gmail.com) Academic editor: Vishwas Chavan  |  Received 13 March 2012  |  Accepted 18 April 2012  |  Published 23 April 2012 Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Starfish (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078 Abstract This dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. The expedition focused on deep-sea stations in the Powell Basin and Weddell Sea. Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. The sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ). The dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens. The andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea starfish. Before this study, most of the information available focused on starfish from shallower depths than 1000m. This dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er- emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)). Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern starfish, covering a very large sampling zone. The dataset also brings to light six species, newly reported in the Southern Ocean. The quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys- tems, checking of identification by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux- Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC- BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.Sunday 15 July 12
  48. 48. afg. biodiversity.aq • Identification aid • High quality (useful) pictures • Expert Descriptions • Built on-the-fly from various sources • Generates a pdf for taxa/area of interestSunday 15 July 12
  49. 49. afg. biodiversity.aqSunday 15 July 12
  50. 50. afg. biodiversity.aqSunday 15 July 12
  51. 51. afg. biodiversity.aqSunday 15 July 12
  52. 52. atlas.biodiversity.aqSunday 15 July 12
  53. 53. atlas.biodiversity.aq • Biogeographic Atlas of the Southern OceanSunday 15 July 12
  54. 54. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 FolioSunday 15 July 12
  55. 55. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approachSunday 15 July 12
  56. 56. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach • Static and dynamic versionsSunday 15 July 12
  57. 57. atlas.biodiversity.aq • Biogeographic Atlas of the Southern Ocean • Redo of Hedgepeth 1969 Folio • Predictive approach • Static and dynamic versions • Modelization loops are readySunday 15 July 12
  58. 58. Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence recordsSunday 15 July 12
  59. 59. Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence recordsSunday 15 July 12
  60. 60. Slope 94 Interpolated data layers Bathymetry Chlorophyll Distance to the continent Distance to bird colonies Distance to ice Distance to shelf Distance to canyon Floor temperature ... + ANTABIF Occurrence recordsSunday 15 July 12
  61. 61. R-functions GUI for BRT and GDMSunday 15 July 12
  62. 62. R-functions GUI for BRT and GDMSunday 15 July 12
  63. 63. mARS.biodiversity.aqSunday 15 July 12
  64. 64. mARS.biodiversity.aq • Microbial Antarctic Resource SystemSunday 15 July 12
  65. 65. mARS.biodiversity.aq • Microbial Antarctic Resource System • The organisms are small… but their environmental impacts are critical to many Antarctic ecosystemsSunday 15 July 12
  66. 66. mARS.biodiversity.aq • Microbial Antarctic Resource System • The organisms are small… but their environmental impacts are critical to many Antarctic ecosystems • They are the dominant and most diverse form of life in the oceans and in the various microbial habitats on the continentSunday 15 July 12
  67. 67. mARS.biodiversity.aq • Microbial Antarctic Resource System • The organisms are small… but their environmental impacts are critical to many Antarctic ecosystems • They are the dominant and most diverse form of life in the oceans and in the various microbial habitats on the continent • Access to their diversity is becoming cost-effective and increasing exponentiallySunday 15 July 12
  68. 68. mars.biodiversity.aqSunday 15 July 12
  69. 69. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIFSunday 15 July 12
  70. 70. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach:Sunday 15 July 12
  71. 71. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Step 0: data description and discoverySunday 15 July 12
  72. 72. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadataSunday 15 July 12
  73. 73. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata Step 2: sequence dataSunday 15 July 12
  74. 74. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata Step 2: sequence data Step 3: batch sequence data processingSunday 15 July 12
  75. 75. mars.biodiversity.aq • Integrate Antarctic microbial DNA sequence data in ANTABIF • Phased approach: Step 0: data description and discovery Step 1: microbial sequence and habitat metadata Step 2: sequence data Step 3: batch sequence data processing Step 4: customized sequence data processingSunday 15 July 12
  76. 76. mARS.biodiversity.aqSunday 15 July 12
  77. 77. mARS.biodiversity.aq • Potential applications:Sunday 15 July 12
  78. 78. mARS.biodiversity.aq • Potential applications: Is there a biogeography of Antarctic microbes?Sunday 15 July 12
  79. 79. mARS.biodiversity.aq • Potential applications: Is there a biogeography of Antarctic microbes? Document Antarctic bioprospecting activitiesSunday 15 July 12
  80. 80. mARS.biodiversity.aq • Potential applications: Is there a biogeography of Antarctic microbes? Document Antarctic bioprospecting activities Assess bioindicating value of microbial diversity as early warning system of ecosystems shiftsSunday 15 July 12
  81. 81. In the pipelineSunday 15 July 12
  82. 82. in the pipeline • Interactive Identification keys • Spatially explicit gazetteer • Genomics/Proteomics (mARS paving the way) • Expeditions DBs • more...Sunday 15 July 12
  83. 83. Thanks and questions? @biodiversityaq image  ©  NY  Times  Sunday 15 July 12

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