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Community Ecology & Function

Phylogenetic Diversity in Rock Outcrop Plant Communities
                 in Southeastern Brazil

          Colmenares S.L.T.1, Rosado B.H.P.2, de Mattos E.A.3
       1 Universidade Federal do Rio de Janeiro – Programa de Pós Graduação em Ecologia
                   2 Instituto de Pesquisa Jardim Botânico do Rio de Janeiro ,
             3 Universidade Federal do Rio de Janeiro –   Departamento de Ecologia




                                                                                                   Symposia
                                                          DNA barcodes and beyond: Developing and utilizing
                                                          community-wide DNA sequence data to understand
                                                               ecology and evolution of tropical biodiversity
Analysis of the phylogenetic structure of communities
 provide insights into the ecological processes that
              organize them (Webb, 2000)



                                            …




                                           (Vamosi, et al. 2009)
ROCKY OUTCROPS OR INSELBERGS
“Xeric islands in a tropical matrix”




   great environmental heterogeneity
Vegetation is found forming elliptical
soil-islands or patches of varying size
            and soil depth
These islands exhibit a clearly
defined border, enabling precise
delimitation of area and species
composition




                        Increases in area and substratum depth contain
                             an apparent gradient on water and nutrient
                        availability, which may restrict establishment of
                                                       some plant species
Smaller patches
       provide harsher
        environmental postulated that species’ patch
            Thus, we
       conditions than
             composition will vary according to size
larger ones, probably
  filtering thevariation and species’ phylogenetic
                species
     according to their    relatedness
   ability to deal with
        environmental
               stresses
A set of 26 vegetation patches
  of varied sizes (between 0.5
m2 and 30 m2) was censed to
construct a presence/absence
 species vs. patch area matrix
PHYLOGENETIC COMMUNITY STRUCTURE

22 species - 7 families
PHYLOGENETIC COMMUNITY STRUCTURE

               We aim to explore if
               co-occurring species
                          Com 1

                   within eachClustered


               vegetation patch are
                                Evenly
                              dispersed
               phylogenetic 2evenly
                         Com
                   dispersed or
                    clustered
The Mean Phylogenetic Distance (MPD) and the Mean Nearest Taxon
 Phylogenetic Distance (MNTD) were calculated and tested against null
distribution of 999 null communities to obtain the standardized indexes:

         Net Related Index (NRI) and Nearest Taxon Index (NTI)



                         NRI or NTI ≥ +1.96        Clustered
           When:
                                                     Evenly
                        NRI or NTI ≤ - 1.96
                                                   dispersed
RICHNESS vs. AREA
           14
           12                                                We observed a
           10                                                   significantly
RICHNESS




            8                                                   relationship
            6
                                                           between richness
            4                            R² = 0.256
            2
                                                             and patch area
            0
      -5        5         15        25                35
                         AREA
NRI
  2
1.5
  1
                                       NRI and NTI values were
0.5
  0
                                      not significantly different
                              NRI
-0.5 0
  -1
         10   20    30   40           from randomly generated
-1.5
  -2
                                          null communities
-2.5



              NTI                    Thus, we have some evidence
   2
 1.5                                that the presence of species of
   1
 0.5                                  species in each vegetation
   0
-0.5 0   10   20    30   40
                              NTI
                                        patch presents random
  -1
-1.5                                   phylogenetic distribution
  -2
-2.5
Further studies are necessary to
 test whether the above results
  can remain when variation in
   abundance of species and
  functional trait diversity are
    included on the analysis
So… What can we expect ?




                                           ?


?


                               Webb et al., 2002
ACKNOWLEDGMENTS
  TO MY MOTHER

    PARQUE ESTADUAL
   SERRA DA TIRIRICA –
       NITERÓI, RJ



                              TO PROF.
                         LÚCIA G. LOHMANN
MPD
                                                y = 3.334x + 484.4
       700                                          R² = 0.175
       600
       500
       400
MPD




       300                                                                       MPD was positively, but weak
       200
       100                                                                       related to the patch area and
         0
                 0       5   10    15          20        25       30      35      number of taxa respectively
                                        Area                                        (r2=0.18, pvalue=0.026;
                                                                               r2=0.30, pvalue=0.0024), whereas
                                  MNTD                                          MNTD decreased with increasing
       1000
        800
                                                    y = -5.503x + 503.6
                                                         R² = 0.093
                                                                                        number of taxa
                                                                                 (r2=0.509, pvalue=0.000020).
MNTD




        600
        400
        200
             0
                     0   5   10     15          20        25      30      35
                                         Area
NTI                                                        MPD
      2                                                        700
                                                               600
      1                                                        500
                                                               400




                                                        MPD
      0                                                        300
NTI




           0   5   10   15          20   25   30   35          200
      -1
                                                               100
      -2                                                         0
                                                                      0   5   10    15           20   25   30   35
      -3
                             Area                                                        Area


                        NRI                                                        MNTD
      2                                                        1000
                                                                800
      1
                                                                600
                                                        MNTD


      0
                                                                400
NRI




           0   5   10   15          20   25   30   35
      -1                                                        200

      -2                                                          0
                                                                      0   5   10     15          20   25   30   35
      -3
                             Area                                                         Area
AND WHAT ABOUT
PHYTLOGENETIC RELATEDNESS
BETWEEN CO-OCURRING SPECIES
AT EACH VEGETATION PATCH?

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Phylogenetic Diversity in Rock Outcrop Plant Communities in Southeastern Brazil

  • 1. Community Ecology & Function Phylogenetic Diversity in Rock Outcrop Plant Communities in Southeastern Brazil Colmenares S.L.T.1, Rosado B.H.P.2, de Mattos E.A.3 1 Universidade Federal do Rio de Janeiro – Programa de Pós Graduação em Ecologia 2 Instituto de Pesquisa Jardim Botânico do Rio de Janeiro , 3 Universidade Federal do Rio de Janeiro – Departamento de Ecologia Symposia DNA barcodes and beyond: Developing and utilizing community-wide DNA sequence data to understand ecology and evolution of tropical biodiversity
  • 2. Analysis of the phylogenetic structure of communities provide insights into the ecological processes that organize them (Webb, 2000) … (Vamosi, et al. 2009)
  • 3. ROCKY OUTCROPS OR INSELBERGS “Xeric islands in a tropical matrix” great environmental heterogeneity
  • 4. Vegetation is found forming elliptical soil-islands or patches of varying size and soil depth
  • 5. These islands exhibit a clearly defined border, enabling precise delimitation of area and species composition Increases in area and substratum depth contain an apparent gradient on water and nutrient availability, which may restrict establishment of some plant species
  • 6. Smaller patches provide harsher environmental postulated that species’ patch Thus, we conditions than composition will vary according to size larger ones, probably filtering thevariation and species’ phylogenetic species according to their relatedness ability to deal with environmental stresses
  • 7. A set of 26 vegetation patches of varied sizes (between 0.5 m2 and 30 m2) was censed to construct a presence/absence species vs. patch area matrix
  • 8. PHYLOGENETIC COMMUNITY STRUCTURE 22 species - 7 families
  • 9. PHYLOGENETIC COMMUNITY STRUCTURE We aim to explore if co-occurring species Com 1 within eachClustered vegetation patch are Evenly dispersed phylogenetic 2evenly Com dispersed or clustered
  • 10. The Mean Phylogenetic Distance (MPD) and the Mean Nearest Taxon Phylogenetic Distance (MNTD) were calculated and tested against null distribution of 999 null communities to obtain the standardized indexes: Net Related Index (NRI) and Nearest Taxon Index (NTI) NRI or NTI ≥ +1.96 Clustered When: Evenly NRI or NTI ≤ - 1.96 dispersed
  • 11.
  • 12. RICHNESS vs. AREA 14 12 We observed a 10 significantly RICHNESS 8 relationship 6 between richness 4 R² = 0.256 2 and patch area 0 -5 5 15 25 35 AREA
  • 13. NRI 2 1.5 1 NRI and NTI values were 0.5 0 not significantly different NRI -0.5 0 -1 10 20 30 40 from randomly generated -1.5 -2 null communities -2.5 NTI Thus, we have some evidence 2 1.5 that the presence of species of 1 0.5 species in each vegetation 0 -0.5 0 10 20 30 40 NTI patch presents random -1 -1.5 phylogenetic distribution -2 -2.5
  • 14. Further studies are necessary to test whether the above results can remain when variation in abundance of species and functional trait diversity are included on the analysis
  • 15. So… What can we expect ? ? ? Webb et al., 2002
  • 16. ACKNOWLEDGMENTS TO MY MOTHER PARQUE ESTADUAL SERRA DA TIRIRICA – NITERÓI, RJ TO PROF. LÚCIA G. LOHMANN
  • 17.
  • 18.
  • 19.
  • 20.
  • 21. MPD y = 3.334x + 484.4 700 R² = 0.175 600 500 400 MPD 300 MPD was positively, but weak 200 100 related to the patch area and 0 0 5 10 15 20 25 30 35 number of taxa respectively Area (r2=0.18, pvalue=0.026; r2=0.30, pvalue=0.0024), whereas MNTD MNTD decreased with increasing 1000 800 y = -5.503x + 503.6 R² = 0.093 number of taxa (r2=0.509, pvalue=0.000020). MNTD 600 400 200 0 0 5 10 15 20 25 30 35 Area
  • 22. NTI MPD 2 700 600 1 500 400 MPD 0 300 NTI 0 5 10 15 20 25 30 35 200 -1 100 -2 0 0 5 10 15 20 25 30 35 -3 Area Area NRI MNTD 2 1000 800 1 600 MNTD 0 400 NRI 0 5 10 15 20 25 30 35 -1 200 -2 0 0 5 10 15 20 25 30 35 -3 Area Area
  • 23. AND WHAT ABOUT PHYTLOGENETIC RELATEDNESS BETWEEN CO-OCURRING SPECIES AT EACH VEGETATION PATCH?