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Differential Gene Expression in
        Lead-exposed
   Saccharomyces cerevisae
         Preksha Bhagchandani
           Pine Crest School
Lead: An Environmental Health
           Concern

The Problem: damages brain, nervous
system, and reproductive system, especially in
young children
The Source: leaded gasoline, lead based
paints, industrial settings, batteries
Neurophysical effects of lead, such as
decrease in IQ levels, are known but
molecular mechanisms behind these effects
are not
Purpose
               Gene      human expected     To analyze differential
               Name      gene  regulation
               (yeast)                      expression of 10 genes
Heat shock     HSP10     HSPE1   up         predisposed to lead
proteins
                         HSPA5
                                            exposure using yeast as a
               KAR2              up
                                            model organism
               DED81     NARS    up
               MES1      MARS    up
tRNA
charging       TYS1      YARS    up

               WRS1      WARS    up

               THS1      TARS    up

Amino-acid     BAT2      BCAT1   up
biosynthesis
               SHM2      SHMT2   up
Anion
Channel                  VDAC3
               POR1              down
Methods

Lead environment added to yeast culture in varying
concentrations from 0-1000µM Pb
RNA extraction and confirmation
UV visible spectrophotometry to quanfity RNA
cDNA synthesis using reverse transcriptase
Primer design using software provided by Operon
  Narrow range of annealing temperature, melting
  temperature, and a GC content between 40-60%
PCR and gel electrophoresis to qualitatively analyze
differential gene expression
TDH1

  1 kb


  .5 kb

  .2 kb
  .1 kb

                   0 µM   100 µM 500µM      1000 µM Negative
                     Pb     Pb     Pb        Pb     Control



    TDH1 is a housekeeping gene that should exhibit constant
   expression and whose gene product is around 100 bp. Since
constant expression is observed, differential gene expression in all
   subsequent genes is because of lead-exposure, not error in
                         standardization.
HSP10                             DED81

 1 kb


 .5 kb

 .2 kb
 .1 kb

           0 µM   100 µM 500µM 1000 µM Neg. 0 µM    100 µM 500µM 1000 µM Neg.
             Pb      Pb    Pb   Pb    Control  Pb      Pb    Pb    Pb   Control




   HSP10 is slightly upregulated as expected and the gene product was
 around 200 bp as expected. The intensity of the bands is higher in lead-
   exposed yeast than the control, which exhibits baseline expression.
  DED81 (between 100-200 bp) is also upregulated as expected until the
   1000µM sample, where a decrease in expression is observed, most
              HSP10                                 DED81
probably because at such a high concentration of lead, there is a decrease
                               in cell viability.
Conclusions

HSP10 and DED81 are mostly regulated as
expected but DED81 needs to be re-tested at
lower concentrations of lead
Differential gene expression in yeast models gene
expression of respective homologues in human
genome
  Elucidates the molecular mechanisms behind the
  neurophysical effects of lead in humans
Relevance in determining the appropriate
therapies targeting response pathways affected
by exposure to lead in humans
Future research


PCR reactions for primers of 8 other genes associated
with lead-exposure in other studies
Protein level- analyze differential expression of the
protein products of these genes using western blot

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Sigma xi

  • 1. Differential Gene Expression in Lead-exposed Saccharomyces cerevisae Preksha Bhagchandani Pine Crest School
  • 2. Lead: An Environmental Health Concern The Problem: damages brain, nervous system, and reproductive system, especially in young children The Source: leaded gasoline, lead based paints, industrial settings, batteries Neurophysical effects of lead, such as decrease in IQ levels, are known but molecular mechanisms behind these effects are not
  • 3. Purpose Gene human expected To analyze differential Name gene regulation (yeast) expression of 10 genes Heat shock HSP10 HSPE1 up predisposed to lead proteins HSPA5 exposure using yeast as a KAR2 up model organism DED81 NARS up MES1 MARS up tRNA charging TYS1 YARS up WRS1 WARS up THS1 TARS up Amino-acid BAT2 BCAT1 up biosynthesis SHM2 SHMT2 up Anion Channel VDAC3 POR1 down
  • 4. Methods Lead environment added to yeast culture in varying concentrations from 0-1000µM Pb RNA extraction and confirmation UV visible spectrophotometry to quanfity RNA cDNA synthesis using reverse transcriptase Primer design using software provided by Operon Narrow range of annealing temperature, melting temperature, and a GC content between 40-60% PCR and gel electrophoresis to qualitatively analyze differential gene expression
  • 5. TDH1 1 kb .5 kb .2 kb .1 kb 0 µM 100 µM 500µM 1000 µM Negative Pb Pb Pb Pb Control TDH1 is a housekeeping gene that should exhibit constant expression and whose gene product is around 100 bp. Since constant expression is observed, differential gene expression in all subsequent genes is because of lead-exposure, not error in standardization.
  • 6. HSP10 DED81 1 kb .5 kb .2 kb .1 kb 0 µM 100 µM 500µM 1000 µM Neg. 0 µM 100 µM 500µM 1000 µM Neg. Pb Pb Pb Pb Control Pb Pb Pb Pb Control HSP10 is slightly upregulated as expected and the gene product was around 200 bp as expected. The intensity of the bands is higher in lead- exposed yeast than the control, which exhibits baseline expression. DED81 (between 100-200 bp) is also upregulated as expected until the 1000µM sample, where a decrease in expression is observed, most HSP10 DED81 probably because at such a high concentration of lead, there is a decrease in cell viability.
  • 7. Conclusions HSP10 and DED81 are mostly regulated as expected but DED81 needs to be re-tested at lower concentrations of lead Differential gene expression in yeast models gene expression of respective homologues in human genome Elucidates the molecular mechanisms behind the neurophysical effects of lead in humans Relevance in determining the appropriate therapies targeting response pathways affected by exposure to lead in humans
  • 8. Future research PCR reactions for primers of 8 other genes associated with lead-exposure in other studies Protein level- analyze differential expression of the protein products of these genes using western blot