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MICROBIOLOGICAL ANALYSIS
MICROBIOLOGICAL ANALYSIS
MICROBIOLOGICAL ANALYSIS
MICROBIOLOGICAL ANALYSIS
OF FOOD & FOOD PRODUCTS
OF FOOD & FOOD PRODUCTS
OF FOOD & FOOD PRODUCTS
OF FOOD & FOOD PRODUCTS
By
Angshuman Saha
Assistant Director
Export Inspection Agency-Mumbai, PTH
&
T Maheswara Rao
Technical Officer
Export Inspection Agency-Mumbai, PTH
1
EXPORT INSPECTION AGENCY - MUMBAI PTH
GOOD FOOD LABORATORY PRACTICES
Introduction
To ensure food safety and quality, food samples
require certain microbiological tests considering
following relevant points -
The homogeneity of the food, the relative sizes of
the sample to be taken.
The potential degree of variation of the parameters
for analysis,
The significance and intended use of the analytical
result.
2
EXPORT INSPECTION AGENCY - MUMBAI PTH
GOOD FOOD LABORATORY PRACTICES
Entry point
• Change room mandatory requirement
• In the change room all Personal Protective
Equipments(PPEs) must be available which are lab
coat, mask, cap, shoe cover / slipper and gloves.
• Suitable Hand disinfectant
• Restricted entry to avoid chances of contamination
3
EXPORT INSPECTION AGENCY - MUMBAI PTH
GOOD FOOD LABORATORY PRACTICES
Sample receiving
• The sample should be protected against extraneous
contamination.
• The temperature at the time of collection and upon
receipt is useful to the laboratory for the
interpretation of results.
• A sample container should not be more than three-
quarters full in order to avoid leakage and to allow
proper mixing of the sample in the laboratory.
• Identify samples clearly and completely, and record
the sample information in log book.
4
EXPORT INSPECTION AGENCY - MUMBAI PTH
GOOD FOOD LABORATORY PRACTICES
Media Preparation
• Distilled water should be used
[Minimum Acceptance criteria conductivity 25 µScm−1 , TPC 100 CFU/mL, free of
any inhibitory agent]
• Post sterilization pH check mandatory. pH paper not
recommended.
• pH calibration daily with three buffer-4.0;7.0;9.0
• Log book - date of preparation, media name, lot no, wt. qty,
mode of sterilization, measured pH, prepared by and verified by.
• Balance for only media preparation; can not be used for sample
preparation
• Daily checks of balance with single weight.
5
EXPORT INSPECTION AGENCY - MUMBAI PTH
GOOD FOOD LABORATORY PRACTICES
Media Preparation
• Media used in pour plate methods, which are added to the
sample, are tempered to 44 °C to 47 °C, using a water bath set
at 44 °C to 47 °C
• Heat-labile supplements should be added to the medium
after it has been cooled to below 50 °C.
• Pour the molten agar culture medium into Petri dishes so as
to obtain a thickness of at least 3 mm (e.g. for 90 mm
diameter dishes, 18 ml to 20 ml of agar are normally required)
• For surface inoculation of solid culture media, dry the plates
shortly before use until the droplets have disappeared from
the surface of the medium. Do not over-dry the plates.
GOOD FOOD LABORATORY PRACTICES 6
EXPORT INSPECTION AGENCY - MUMBAI PTH
Sterilization
• Autoclave – Used for sterilization of media/Buffer
etc. Same can not be used for disposal.
• 121± 30C for 15 min
• Performance Verification –
Chemical strip every batch/cycle
Biological strip every month
External Calibration against temperature
Use of timer recommended.
Pressure gauge calibration not mandatory.
7
EXPORT INSPECTION AGENCY - MUMBAI PTH
GOOD FOOD LABORATORY PRACTICES
Method, equipment  analysis
• Use of latest national/international std. method
• Analysis must be performed by a qualified, trained 
competent analyst.
• Examine the samples as soon as possible after receipt,
preferably within 24 h(perishable), or as agreed with the
parties concerned.
• Pan balance for sample weighing ; daily checks with single
weight; the maximum permissible errors should be 1 % or
better when weighing out test samples  record in log book.
• The sample container should be wiped with disinfectant and
opened for just long enough to allow the sample to be
transferred and closed immediately afterwards.
• Test should be performed in a separate closed area under
LAF or near to burner flame(50 cm dia).
8
EXPORT INSPECTION AGENCY - MUMBAI PTH
GOOD FOOD LABORATORY PRACTICES
Method, equipment  analysis
• Sample homogenization: Use of stomacher / bag mixer preferred.
Usual operating time 1 min to 3 min.
• During serial dilution mouth pipetting prohibited; Use of
micropipette recommended.
• Incubator used should be of 0.1 resolution with temperature
display. Observation twice daily by working thermometer or by data
logging system.
• More than six plates should not be stacked while keeping for
incubation in the incubator.
• Use of anaerobic system where necessary
9
EXPORT INSPECTION AGENCY - MUMBAI PTH
GOOD FOOD LABORATORY PRACTICES
Method, equipment  analysis
• Log book - Date, sample no, temperature, time in  time
out , name of analyst  verifier
• Use of reference culture as positive control
• Use of negative control (buffer control, plate control, area
control) wherever applicable during analysis
• Should consider both typical  atypical colony for
pathogen detection
• Lab must have adequate biochemical reagents  antisera
for carrying out confirmatory test
• Should use proper formula for enumeration of quantitative
parameters like – TPC
• Should observe  record the result
• Proper use of units according to parameters in the test
report
10
EXPORT INSPECTION AGENCY - MUMBAI PTH
GOOD FOOD LABORATORY PRACTICES
Method of calculation for TPC
• Calculate the number N of microorganisms present in the test
sample as a weighted mean from two successive dilutions
using Equation
N = ΣC/Vx1.1xd
where
• C is the sum of the colonies counted on the two dishes
retained from two successive dilutions, at least one of which
contains a minimum of 10 colonies;
• V is the volume of inoculum placed in each dish, in millilitres;
• d is the dilution corresponding to the first dilution retained
[d= 1 when the undiluted liquid product is retained]
GOOD FOOD LABORATORY PRACTICES 11
EXPORT INSPECTION AGENCY - MUMBAI PTH
Example
Counting has produced the following results:
at the first dilution retained (10–2): 168 cfu
at the second dilution retained (10–3):14 cfu
N = ΣC/Vx1.1xd = 168 +14/1x1.1x10-2= 182/0.011
=16 545
Rounding off the result as specified above, the
number of microorganisms is 17 000 or 1,7
104 per gram of product.
GOOD FOOD LABORATORY PRACTICES 12
EXPORT INSPECTION AGENCY - MUMBAI PTH
Method of calculation: after identification
When the method used requires identification, a given number A
(generally 5) of presumptive colonies is identified from each of
the dishes retained for the colony counting. After identification,
calculate, for each of the dishes, the number a of colonies
complying with identification criteria, using Equation :
a = b/A x C
where
• b is the number of colonies complying with identification
criteria among the identified colonies A;
• C is the total number of presumptive colonies counted on the
dish.
GOOD FOOD LABORATORY PRACTICES 13
EXPORT INSPECTION AGENCY - MUMBAI PTH
Safety cabinet
Horizontal laminar airflow cabinets protect the product from
contamination, but blow any aerosols generated into the
operator’s face.
Vertical laminar airflow cabinets protect the product by the use
of vertical laminar flow of HEPA-filtered air. They also protect the
operator by the use of internally recirculated air.
Class II safety cabinets protect the product, the operator and the
environment. They recirculate some filtered air, exhaust some to
the atmosphere and take in replacement air through the working
aperture, thereby providing operator protection. They are
suitable for work with risk category 3 pathogens.
GOOD FOOD LABORATORY PRACTICES 14
EXPORT INSPECTION AGENCY - MUMBAI PTH
Method, equipment  analysis
• Refrigerator – For the conservation of perishable food
samples for analysis, the temperature shall be 3 °C ± 2 °C. For
other uses, the temperature, shall be 5 °C ± 3 °C
• Deep Freezer – The temperature, shall be below −15 °C,
preferably below −18 °C for highly perishable food samples
• Ultra low Deep Freezer – Reference stock cultures are
maintained at – 70 °C or below
15
EXPORT INSPECTION AGENCY - MUMBAI PTH
GOOD FOOD LABORATORY PRACTICES
Use of reference culture
The use of reference culture is mandatory for –
 Quality control of microbiological test, media
verification  kit verification
 Verification of test method before use
 To compare between microbiological techniques
The laboratory must use reference culture from a
certified/reputed culture collection centre(MTCC, ATCC
or ATCC derivative etc) for traceability
GOOD FOOD LABORATORY PRACTICES 16
EXPORT INSPECTION AGENCY - MUMBAI PTH
Handling  storage of Reference culture
Reference Culture
Cultured once
Check purity
Reference stock
(long term storage at – 700C  below)
Thaw/reconstitute – cultured once
Working stock
(Short term storage at 40C)
Check purity
Working culture
GOOD FOOD LABORATORY PRACTICES 17
EXPORT INSPECTION AGENCY - MUMBAI PTH
Disposal
• Separate autoclave for disposal of used
media/tubes/flasks etc.
• At 121±30C for 30 min
• Log book - date; items kept; temperature  time of
retention; sticking of used chemical strips; performed
by  verified by
• Discard the sterilized material through authorized
biomedical waste collection organization.
18
EXPORT INSPECTION AGENCY - MUMBAI PTH
GOOD FOOD LABORATORY PRACTICES
Quality Control
Use of positive  negative control during test
Spike study
Reproducibility
Participation in ILC/PT program
Set the evaluation criteria
GOOD FOOD LABORATORY PRACTICES 19
EXPORT INSPECTION AGENCY - MUMBAI PTH
Use of alternative method
If the food business operator/laboratory wishes to use
analytical methods other than std. national/International
methods, the methods shall be validated according to
internationally accepted protocols and their use
authorised by the competent authority.
Certification AFNOR – http://www.afnor-validation.org/
Certificacion AOAC – http://www.aoac.org/
Certification Microval – http://www.microval.org/
GOOD FOOD LABORATORY PRACTICES 20
EXPORT INSPECTION AGENCY - MUMBAI PTH
Use of alternative method
The food industry needs to release safe products in as
little time as possible:
• Product demands
• Short shelve life products
• Storage cost
• Give solution to problems: fast decision making
• Fast diagnosis of control plans.
• Fast answer in a food crisis : emerging pathogens
GOOD FOOD LABORATORY PRACTICES 21
EXPORT INSPECTION AGENCY - MUMBAI PTH
Use of alternative method
Advantage
• Speed in results
• Reduction in laboratory
labouring
• Higher productivity
• Easier interpretation of
results
Disadvantage
• Cost of equipment and
reagents
• Limitations in application
• Aceptance by clients/
Regulatory authority
GOOD FOOD LABORATORY PRACTICES 22
EXPORT INSPECTION AGENCY - MUMBAI PTH
Conclusion
23
EXPORT INSPECTION AGENCY - MUMBAI PTH
The principle objective of a laboratory is to
produce reliable result which is therefore the
activity to which due attention must be paid.
The general objective of the laboratory might
be defined as producing analytical data of
adequate accuracy and reliability within an
acceptable time.
GOOD FOOD LABORATORY PRACTICES
Thank you
24
EXPORT INSPECTION AGENCY - MUMBAI PTH
GOOD FOOD LABORATORY PRACTICES

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Microbiological Analysis of Food & Food Product

  • 1. MICROBIOLOGICAL ANALYSIS MICROBIOLOGICAL ANALYSIS MICROBIOLOGICAL ANALYSIS MICROBIOLOGICAL ANALYSIS OF FOOD & FOOD PRODUCTS OF FOOD & FOOD PRODUCTS OF FOOD & FOOD PRODUCTS OF FOOD & FOOD PRODUCTS By Angshuman Saha Assistant Director Export Inspection Agency-Mumbai, PTH & T Maheswara Rao Technical Officer Export Inspection Agency-Mumbai, PTH 1 EXPORT INSPECTION AGENCY - MUMBAI PTH GOOD FOOD LABORATORY PRACTICES
  • 2. Introduction To ensure food safety and quality, food samples require certain microbiological tests considering following relevant points - The homogeneity of the food, the relative sizes of the sample to be taken. The potential degree of variation of the parameters for analysis, The significance and intended use of the analytical result. 2 EXPORT INSPECTION AGENCY - MUMBAI PTH GOOD FOOD LABORATORY PRACTICES
  • 3. Entry point • Change room mandatory requirement • In the change room all Personal Protective Equipments(PPEs) must be available which are lab coat, mask, cap, shoe cover / slipper and gloves. • Suitable Hand disinfectant • Restricted entry to avoid chances of contamination 3 EXPORT INSPECTION AGENCY - MUMBAI PTH GOOD FOOD LABORATORY PRACTICES
  • 4. Sample receiving • The sample should be protected against extraneous contamination. • The temperature at the time of collection and upon receipt is useful to the laboratory for the interpretation of results. • A sample container should not be more than three- quarters full in order to avoid leakage and to allow proper mixing of the sample in the laboratory. • Identify samples clearly and completely, and record the sample information in log book. 4 EXPORT INSPECTION AGENCY - MUMBAI PTH GOOD FOOD LABORATORY PRACTICES
  • 5. Media Preparation • Distilled water should be used [Minimum Acceptance criteria conductivity 25 µScm−1 , TPC 100 CFU/mL, free of any inhibitory agent] • Post sterilization pH check mandatory. pH paper not recommended. • pH calibration daily with three buffer-4.0;7.0;9.0 • Log book - date of preparation, media name, lot no, wt. qty, mode of sterilization, measured pH, prepared by and verified by. • Balance for only media preparation; can not be used for sample preparation • Daily checks of balance with single weight. 5 EXPORT INSPECTION AGENCY - MUMBAI PTH GOOD FOOD LABORATORY PRACTICES
  • 6. Media Preparation • Media used in pour plate methods, which are added to the sample, are tempered to 44 °C to 47 °C, using a water bath set at 44 °C to 47 °C • Heat-labile supplements should be added to the medium after it has been cooled to below 50 °C. • Pour the molten agar culture medium into Petri dishes so as to obtain a thickness of at least 3 mm (e.g. for 90 mm diameter dishes, 18 ml to 20 ml of agar are normally required) • For surface inoculation of solid culture media, dry the plates shortly before use until the droplets have disappeared from the surface of the medium. Do not over-dry the plates. GOOD FOOD LABORATORY PRACTICES 6 EXPORT INSPECTION AGENCY - MUMBAI PTH
  • 7. Sterilization • Autoclave – Used for sterilization of media/Buffer etc. Same can not be used for disposal. • 121± 30C for 15 min • Performance Verification – Chemical strip every batch/cycle Biological strip every month External Calibration against temperature Use of timer recommended. Pressure gauge calibration not mandatory. 7 EXPORT INSPECTION AGENCY - MUMBAI PTH GOOD FOOD LABORATORY PRACTICES
  • 8. Method, equipment analysis • Use of latest national/international std. method • Analysis must be performed by a qualified, trained competent analyst. • Examine the samples as soon as possible after receipt, preferably within 24 h(perishable), or as agreed with the parties concerned. • Pan balance for sample weighing ; daily checks with single weight; the maximum permissible errors should be 1 % or better when weighing out test samples record in log book. • The sample container should be wiped with disinfectant and opened for just long enough to allow the sample to be transferred and closed immediately afterwards. • Test should be performed in a separate closed area under LAF or near to burner flame(50 cm dia). 8 EXPORT INSPECTION AGENCY - MUMBAI PTH GOOD FOOD LABORATORY PRACTICES
  • 9. Method, equipment analysis • Sample homogenization: Use of stomacher / bag mixer preferred. Usual operating time 1 min to 3 min. • During serial dilution mouth pipetting prohibited; Use of micropipette recommended. • Incubator used should be of 0.1 resolution with temperature display. Observation twice daily by working thermometer or by data logging system. • More than six plates should not be stacked while keeping for incubation in the incubator. • Use of anaerobic system where necessary 9 EXPORT INSPECTION AGENCY - MUMBAI PTH GOOD FOOD LABORATORY PRACTICES
  • 10. Method, equipment analysis • Log book - Date, sample no, temperature, time in time out , name of analyst verifier • Use of reference culture as positive control • Use of negative control (buffer control, plate control, area control) wherever applicable during analysis • Should consider both typical atypical colony for pathogen detection • Lab must have adequate biochemical reagents antisera for carrying out confirmatory test • Should use proper formula for enumeration of quantitative parameters like – TPC • Should observe record the result • Proper use of units according to parameters in the test report 10 EXPORT INSPECTION AGENCY - MUMBAI PTH GOOD FOOD LABORATORY PRACTICES
  • 11. Method of calculation for TPC • Calculate the number N of microorganisms present in the test sample as a weighted mean from two successive dilutions using Equation N = ΣC/Vx1.1xd where • C is the sum of the colonies counted on the two dishes retained from two successive dilutions, at least one of which contains a minimum of 10 colonies; • V is the volume of inoculum placed in each dish, in millilitres; • d is the dilution corresponding to the first dilution retained [d= 1 when the undiluted liquid product is retained] GOOD FOOD LABORATORY PRACTICES 11 EXPORT INSPECTION AGENCY - MUMBAI PTH
  • 12. Example Counting has produced the following results: at the first dilution retained (10–2): 168 cfu at the second dilution retained (10–3):14 cfu N = ΣC/Vx1.1xd = 168 +14/1x1.1x10-2= 182/0.011 =16 545 Rounding off the result as specified above, the number of microorganisms is 17 000 or 1,7 104 per gram of product. GOOD FOOD LABORATORY PRACTICES 12 EXPORT INSPECTION AGENCY - MUMBAI PTH
  • 13. Method of calculation: after identification When the method used requires identification, a given number A (generally 5) of presumptive colonies is identified from each of the dishes retained for the colony counting. After identification, calculate, for each of the dishes, the number a of colonies complying with identification criteria, using Equation : a = b/A x C where • b is the number of colonies complying with identification criteria among the identified colonies A; • C is the total number of presumptive colonies counted on the dish. GOOD FOOD LABORATORY PRACTICES 13 EXPORT INSPECTION AGENCY - MUMBAI PTH
  • 14. Safety cabinet Horizontal laminar airflow cabinets protect the product from contamination, but blow any aerosols generated into the operator’s face. Vertical laminar airflow cabinets protect the product by the use of vertical laminar flow of HEPA-filtered air. They also protect the operator by the use of internally recirculated air. Class II safety cabinets protect the product, the operator and the environment. They recirculate some filtered air, exhaust some to the atmosphere and take in replacement air through the working aperture, thereby providing operator protection. They are suitable for work with risk category 3 pathogens. GOOD FOOD LABORATORY PRACTICES 14 EXPORT INSPECTION AGENCY - MUMBAI PTH
  • 15. Method, equipment analysis • Refrigerator – For the conservation of perishable food samples for analysis, the temperature shall be 3 °C ± 2 °C. For other uses, the temperature, shall be 5 °C ± 3 °C • Deep Freezer – The temperature, shall be below −15 °C, preferably below −18 °C for highly perishable food samples • Ultra low Deep Freezer – Reference stock cultures are maintained at – 70 °C or below 15 EXPORT INSPECTION AGENCY - MUMBAI PTH GOOD FOOD LABORATORY PRACTICES
  • 16. Use of reference culture The use of reference culture is mandatory for – Quality control of microbiological test, media verification kit verification Verification of test method before use To compare between microbiological techniques The laboratory must use reference culture from a certified/reputed culture collection centre(MTCC, ATCC or ATCC derivative etc) for traceability GOOD FOOD LABORATORY PRACTICES 16 EXPORT INSPECTION AGENCY - MUMBAI PTH
  • 17. Handling storage of Reference culture Reference Culture Cultured once Check purity Reference stock (long term storage at – 700C below) Thaw/reconstitute – cultured once Working stock (Short term storage at 40C) Check purity Working culture GOOD FOOD LABORATORY PRACTICES 17 EXPORT INSPECTION AGENCY - MUMBAI PTH
  • 18. Disposal • Separate autoclave for disposal of used media/tubes/flasks etc. • At 121±30C for 30 min • Log book - date; items kept; temperature time of retention; sticking of used chemical strips; performed by verified by • Discard the sterilized material through authorized biomedical waste collection organization. 18 EXPORT INSPECTION AGENCY - MUMBAI PTH GOOD FOOD LABORATORY PRACTICES
  • 19. Quality Control Use of positive negative control during test Spike study Reproducibility Participation in ILC/PT program Set the evaluation criteria GOOD FOOD LABORATORY PRACTICES 19 EXPORT INSPECTION AGENCY - MUMBAI PTH
  • 20. Use of alternative method If the food business operator/laboratory wishes to use analytical methods other than std. national/International methods, the methods shall be validated according to internationally accepted protocols and their use authorised by the competent authority. Certification AFNOR – http://www.afnor-validation.org/ Certificacion AOAC – http://www.aoac.org/ Certification Microval – http://www.microval.org/ GOOD FOOD LABORATORY PRACTICES 20 EXPORT INSPECTION AGENCY - MUMBAI PTH
  • 21. Use of alternative method The food industry needs to release safe products in as little time as possible: • Product demands • Short shelve life products • Storage cost • Give solution to problems: fast decision making • Fast diagnosis of control plans. • Fast answer in a food crisis : emerging pathogens GOOD FOOD LABORATORY PRACTICES 21 EXPORT INSPECTION AGENCY - MUMBAI PTH
  • 22. Use of alternative method Advantage • Speed in results • Reduction in laboratory labouring • Higher productivity • Easier interpretation of results Disadvantage • Cost of equipment and reagents • Limitations in application • Aceptance by clients/ Regulatory authority GOOD FOOD LABORATORY PRACTICES 22 EXPORT INSPECTION AGENCY - MUMBAI PTH
  • 23. Conclusion 23 EXPORT INSPECTION AGENCY - MUMBAI PTH The principle objective of a laboratory is to produce reliable result which is therefore the activity to which due attention must be paid. The general objective of the laboratory might be defined as producing analytical data of adequate accuracy and reliability within an acceptable time. GOOD FOOD LABORATORY PRACTICES
  • 24. Thank you 24 EXPORT INSPECTION AGENCY - MUMBAI PTH GOOD FOOD LABORATORY PRACTICES