Extracellular Vesicles (EVs) derived from mesenchymal stem cells are known to have therapeutic potential, with several clinical trials ongoing. EV applications to drug delivery platforms have also been developed. Increasing research efforts in the EV field have yielded an appreciation for the potential role of glycans in EV function.
TCI can synthesize various glycans related products to support your research,
- For Insertion (chemical synthetic oligosaccharide)
- For Detection (antibodies and Lectins)
- For Cleavage (Enzymes)
Glycan Structural Analysis Throughout Biotherapeutic Development SGS
Glycosylation is a key structural and functional element found on a wide variety of biotherapeutics. As such, alterations in glycan profile can significantly affect the efficacy of a drug through, for example, half life in the bloodstream or biological activity as well as being a potential source of immunogenicity. The glycan profile can be selected and controlled through the choice of cell line as well as control of bioreactor conditions. The use of analytical techniques that provide structural data on this type of post translational modification are vital in the development and characterisation of biologics. Techniques in glycan structural characterisation are discussed in this presentation.
This explains the complex carbohydrates and chemistry of heterpolysaccharides. composition, distribution and its function is explained for each GAGs. brief notes on blood group ag is available. difference between proteoglycan and glycoprotein is explained in a essay way to understand. clinical importance is also added.
Glycan Structural Analysis Throughout Biotherapeutic Development SGS
Glycosylation is a key structural and functional element found on a wide variety of biotherapeutics. As such, alterations in glycan profile can significantly affect the efficacy of a drug through, for example, half life in the bloodstream or biological activity as well as being a potential source of immunogenicity. The glycan profile can be selected and controlled through the choice of cell line as well as control of bioreactor conditions. The use of analytical techniques that provide structural data on this type of post translational modification are vital in the development and characterisation of biologics. Techniques in glycan structural characterisation are discussed in this presentation.
This explains the complex carbohydrates and chemistry of heterpolysaccharides. composition, distribution and its function is explained for each GAGs. brief notes on blood group ag is available. difference between proteoglycan and glycoprotein is explained in a essay way to understand. clinical importance is also added.
The microbiology of the winemaking process, which includes inoculated strains
of the yeast Saccharomyces cerevisiae and the lactic acid bacterium, Oenococcus
oeni, is critical to process efficiency and wine quality. In each case these organisms
are required to complete a core conversion (sugar to ethanol or lactate to malate,
respectively) as well as make desirable sensory contributions. These activities
typically occur under extreme conditions which may include high sugar (osmolarity)
and ethanol content and low pH, temperature and nutrient availability. We have used
mutant screening strategies and functional genomic approaches to identify the basis
of superior yeast performance in the face of these challenges. In addition we have
use adaptive evolution to yield yeast with enhance fermentation reliability based on
increase nitrogen efficiency, fructophilicity or general robustness. In parallel work,
we have isolated and heterologously expressed genes from O. oeni which encode
esterases or glucosidases. Characterisation of these gene products has provided
insights into their roles within the cell as well as potential contribution to wine.
Biodegradation Potentials of Aspergillus Flavipes Isolated from Uburu and Okp...YogeshIJTSRD
Saline lakes are water bodies with salinity greater than 3 g l 0.3 , while hypersaline lakes are water bodies that surpass the moderate 35 g l 3.5 salt of oceans. Hypersaline lakes, could either be thalassohaline which are creations of evaporation of seawater and as such contain sodium chloride as the major salt, with a salinity that surpasses that of seawater by a factor of 5 – 10, with a neutral or slightly alkaline pH . Whereas, athalassohaline lakes stem from non seawater sources and are made up of high concentrations of ions such as magnesium and calcium and sundry other ions such as potassium, or sodium in smaller amounts. This work has revealed the biodegradation potentials of some halophiles isolated from Uburu and Okposi salt lakes. The isolates recovered in descending order of salt tolerance were Aspergillus flavipes 13mm at 40 , Penicillium citrinum 10mm at 40 , Aspergillus ochraceus 9mm at 40 , Aspergillus nomius 15mm at 35 , Microsphaeropsis arundinis 12mm at 35 , Aspergillus sydowi 28mm at 30 , Penicillium janthinellum 26mm at 30 , Mucor sp 13mm at 30 , Aureobasidium sp 12mm at 30 , Trichoderma sp 9mm at 30 , Alternaria sp. 22mm at 25 , Aspergillus sp 18mm at 25 , Penicillium sp 20mm at 20 , Cladosporium sp. 7mm at 15 and identified using ITS rDNA Sequencing Macrogen, South Korea . They belonged to the borderline extreme halophiles and moderate halophiles respectively. The biodegradative potential of Aspergillus flavipes was ascertained by testing it against 2 , 4 and 6 crude oil and it grew only on 2 crude oil Bushnell Haas broth with a fungal count of 2.56x105 cfu ml. Crude oil degradation rate was evaluated biweekly gravimetrically with 22 degradation in 2 weeks, 36 in 4 weeks, 67 in 6 weeks and 89 in 8 weeks as well as by way of gas chromatography GC FID , which showed that fractions C10 C11 were significantly degraded, C12 C20, moderately degraded and C26 C34, insignificantly degraded. Kingsley C. Agu | Frederick J. C. Odibo "Biodegradation Potentials of Aspergillus Flavipes Isolated from Uburu and Okposi Salt Lakes" Published in International Journal of Trend in Scientific Research and Development (ijtsrd), ISSN: 2456-6470, Volume-5 | Issue-5 , August 2021, URL: https://www.ijtsrd.com/papers/ijtsrd44949.pdf Paper URL: https://www.ijtsrd.com/biological-science/microbiology/44949/biodegradation-potentials-of-aspergillus-flavipes-isolated-from-uburu-and-okposi-salt-lakes/kingsley-c-agu
The microbiology of the winemaking process, which includes inoculated strains
of the yeast Saccharomyces cerevisiae and the lactic acid bacterium, Oenococcus
oeni, is critical to process efficiency and wine quality. In each case these organisms
are required to complete a core conversion (sugar to ethanol or lactate to malate,
respectively) as well as make desirable sensory contributions. These activities
typically occur under extreme conditions which may include high sugar (osmolarity)
and ethanol content and low pH, temperature and nutrient availability. We have used
mutant screening strategies and functional genomic approaches to identify the basis
of superior yeast performance in the face of these challenges. In addition we have
use adaptive evolution to yield yeast with enhance fermentation reliability based on
increase nitrogen efficiency, fructophilicity or general robustness. In parallel work,
we have isolated and heterologously expressed genes from O. oeni which encode
esterases or glucosidases. Characterisation of these gene products has provided
insights into their roles within the cell as well as potential contribution to wine.
Biodegradation Potentials of Aspergillus Flavipes Isolated from Uburu and Okp...YogeshIJTSRD
Saline lakes are water bodies with salinity greater than 3 g l 0.3 , while hypersaline lakes are water bodies that surpass the moderate 35 g l 3.5 salt of oceans. Hypersaline lakes, could either be thalassohaline which are creations of evaporation of seawater and as such contain sodium chloride as the major salt, with a salinity that surpasses that of seawater by a factor of 5 – 10, with a neutral or slightly alkaline pH . Whereas, athalassohaline lakes stem from non seawater sources and are made up of high concentrations of ions such as magnesium and calcium and sundry other ions such as potassium, or sodium in smaller amounts. This work has revealed the biodegradation potentials of some halophiles isolated from Uburu and Okposi salt lakes. The isolates recovered in descending order of salt tolerance were Aspergillus flavipes 13mm at 40 , Penicillium citrinum 10mm at 40 , Aspergillus ochraceus 9mm at 40 , Aspergillus nomius 15mm at 35 , Microsphaeropsis arundinis 12mm at 35 , Aspergillus sydowi 28mm at 30 , Penicillium janthinellum 26mm at 30 , Mucor sp 13mm at 30 , Aureobasidium sp 12mm at 30 , Trichoderma sp 9mm at 30 , Alternaria sp. 22mm at 25 , Aspergillus sp 18mm at 25 , Penicillium sp 20mm at 20 , Cladosporium sp. 7mm at 15 and identified using ITS rDNA Sequencing Macrogen, South Korea . They belonged to the borderline extreme halophiles and moderate halophiles respectively. The biodegradative potential of Aspergillus flavipes was ascertained by testing it against 2 , 4 and 6 crude oil and it grew only on 2 crude oil Bushnell Haas broth with a fungal count of 2.56x105 cfu ml. Crude oil degradation rate was evaluated biweekly gravimetrically with 22 degradation in 2 weeks, 36 in 4 weeks, 67 in 6 weeks and 89 in 8 weeks as well as by way of gas chromatography GC FID , which showed that fractions C10 C11 were significantly degraded, C12 C20, moderately degraded and C26 C34, insignificantly degraded. Kingsley C. Agu | Frederick J. C. Odibo "Biodegradation Potentials of Aspergillus Flavipes Isolated from Uburu and Okposi Salt Lakes" Published in International Journal of Trend in Scientific Research and Development (ijtsrd), ISSN: 2456-6470, Volume-5 | Issue-5 , August 2021, URL: https://www.ijtsrd.com/papers/ijtsrd44949.pdf Paper URL: https://www.ijtsrd.com/biological-science/microbiology/44949/biodegradation-potentials-of-aspergillus-flavipes-isolated-from-uburu-and-okposi-salt-lakes/kingsley-c-agu
Similar to Glycan-related Reagents for Extracellular Vesicles (EVs) Research (20)
Richard's entangled aventures in wonderlandRichard Gill
Since the loophole-free Bell experiments of 2020 and the Nobel prizes in physics of 2022, critics of Bell's work have retreated to the fortress of super-determinism. Now, super-determinism is a derogatory word - it just means "determinism". Palmer, Hance and Hossenfelder argue that quantum mechanics and determinism are not incompatible, using a sophisticated mathematical construction based on a subtle thinning of allowed states and measurements in quantum mechanics, such that what is left appears to make Bell's argument fail, without altering the empirical predictions of quantum mechanics. I think however that it is a smoke screen, and the slogan "lost in math" comes to my mind. I will discuss some other recent disproofs of Bell's theorem using the language of causality based on causal graphs. Causal thinking is also central to law and justice. I will mention surprising connections to my work on serial killer nurse cases, in particular the Dutch case of Lucia de Berk and the current UK case of Lucy Letby.
The increased availability of biomedical data, particularly in the public domain, offers the opportunity to better understand human health and to develop effective therapeutics for a wide range of unmet medical needs. However, data scientists remain stymied by the fact that data remain hard to find and to productively reuse because data and their metadata i) are wholly inaccessible, ii) are in non-standard or incompatible representations, iii) do not conform to community standards, and iv) have unclear or highly restricted terms and conditions that preclude legitimate reuse. These limitations require a rethink on data can be made machine and AI-ready - the key motivation behind the FAIR Guiding Principles. Concurrently, while recent efforts have explored the use of deep learning to fuse disparate data into predictive models for a wide range of biomedical applications, these models often fail even when the correct answer is already known, and fail to explain individual predictions in terms that data scientists can appreciate. These limitations suggest that new methods to produce practical artificial intelligence are still needed.
In this talk, I will discuss our work in (1) building an integrative knowledge infrastructure to prepare FAIR and "AI-ready" data and services along with (2) neurosymbolic AI methods to improve the quality of predictions and to generate plausible explanations. Attention is given to standards, platforms, and methods to wrangle knowledge into simple, but effective semantic and latent representations, and to make these available into standards-compliant and discoverable interfaces that can be used in model building, validation, and explanation. Our work, and those of others in the field, creates a baseline for building trustworthy and easy to deploy AI models in biomedicine.
Bio
Dr. Michel Dumontier is the Distinguished Professor of Data Science at Maastricht University, founder and executive director of the Institute of Data Science, and co-founder of the FAIR (Findable, Accessible, Interoperable and Reusable) data principles. His research explores socio-technological approaches for responsible discovery science, which includes collaborative multi-modal knowledge graphs, privacy-preserving distributed data mining, and AI methods for drug discovery and personalized medicine. His work is supported through the Dutch National Research Agenda, the Netherlands Organisation for Scientific Research, Horizon Europe, the European Open Science Cloud, the US National Institutes of Health, and a Marie-Curie Innovative Training Network. He is the editor-in-chief for the journal Data Science and is internationally recognized for his contributions in bioinformatics, biomedical informatics, and semantic technologies including ontologies and linked data.
Cancer cell metabolism: special Reference to Lactate PathwayAADYARAJPANDEY1
Normal Cell Metabolism:
Cellular respiration describes the series of steps that cells use to break down sugar and other chemicals to get the energy we need to function.
Energy is stored in the bonds of glucose and when glucose is broken down, much of that energy is released.
Cell utilize energy in the form of ATP.
The first step of respiration is called glycolysis. In a series of steps, glycolysis breaks glucose into two smaller molecules - a chemical called pyruvate. A small amount of ATP is formed during this process.
Most healthy cells continue the breakdown in a second process, called the Kreb's cycle. The Kreb's cycle allows cells to “burn” the pyruvates made in glycolysis to get more ATP.
The last step in the breakdown of glucose is called oxidative phosphorylation (Ox-Phos).
It takes place in specialized cell structures called mitochondria. This process produces a large amount of ATP. Importantly, cells need oxygen to complete oxidative phosphorylation.
If a cell completes only glycolysis, only 2 molecules of ATP are made per glucose. However, if the cell completes the entire respiration process (glycolysis - Kreb's - oxidative phosphorylation), about 36 molecules of ATP are created, giving it much more energy to use.
IN CANCER CELL:
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
Unlike healthy cells that "burn" the entire molecule of sugar to capture a large amount of energy as ATP, cancer cells are wasteful.
Cancer cells only partially break down sugar molecules. They overuse the first step of respiration, glycolysis. They frequently do not complete the second step, oxidative phosphorylation.
This results in only 2 molecules of ATP per each glucose molecule instead of the 36 or so ATPs healthy cells gain. As a result, cancer cells need to use a lot more sugar molecules to get enough energy to survive.
introduction to WARBERG PHENOMENA:
WARBURG EFFECT Usually, cancer cells are highly glycolytic (glucose addiction) and take up more glucose than do normal cells from outside.
Otto Heinrich Warburg (; 8 October 1883 – 1 August 1970) In 1931 was awarded the Nobel Prize in Physiology for his "discovery of the nature and mode of action of the respiratory enzyme.
WARNBURG EFFECT : cancer cells under aerobic (well-oxygenated) conditions to metabolize glucose to lactate (aerobic glycolysis) is known as the Warburg effect. Warburg made the observation that tumor slices consume glucose and secrete lactate at a higher rate than normal tissues.
Nutraceutical market, scope and growth: Herbal drug technologyLokesh Patil
As consumer awareness of health and wellness rises, the nutraceutical market—which includes goods like functional meals, drinks, and dietary supplements that provide health advantages beyond basic nutrition—is growing significantly. As healthcare expenses rise, the population ages, and people want natural and preventative health solutions more and more, this industry is increasing quickly. Further driving market expansion are product formulation innovations and the use of cutting-edge technology for customized nutrition. With its worldwide reach, the nutraceutical industry is expected to keep growing and provide significant chances for research and investment in a number of categories, including vitamins, minerals, probiotics, and herbal supplements.
Multi-source connectivity as the driver of solar wind variability in the heli...Sérgio Sacani
The ambient solar wind that flls the heliosphere originates from multiple
sources in the solar corona and is highly structured. It is often described
as high-speed, relatively homogeneous, plasma streams from coronal
holes and slow-speed, highly variable, streams whose source regions are
under debate. A key goal of ESA/NASA’s Solar Orbiter mission is to identify
solar wind sources and understand what drives the complexity seen in the
heliosphere. By combining magnetic feld modelling and spectroscopic
techniques with high-resolution observations and measurements, we show
that the solar wind variability detected in situ by Solar Orbiter in March
2022 is driven by spatio-temporal changes in the magnetic connectivity to
multiple sources in the solar atmosphere. The magnetic feld footpoints
connected to the spacecraft moved from the boundaries of a coronal hole
to one active region (12961) and then across to another region (12957). This
is refected in the in situ measurements, which show the transition from fast
to highly Alfvénic then to slow solar wind that is disrupted by the arrival of
a coronal mass ejection. Our results describe solar wind variability at 0.5 au
but are applicable to near-Earth observatories.
THE IMPORTANCE OF MARTIAN ATMOSPHERE SAMPLE RETURN.Sérgio Sacani
The return of a sample of near-surface atmosphere from Mars would facilitate answers to several first-order science questions surrounding the formation and evolution of the planet. One of the important aspects of terrestrial planet formation in general is the role that primary atmospheres played in influencing the chemistry and structure of the planets and their antecedents. Studies of the martian atmosphere can be used to investigate the role of a primary atmosphere in its history. Atmosphere samples would also inform our understanding of the near-surface chemistry of the planet, and ultimately the prospects for life. High-precision isotopic analyses of constituent gases are needed to address these questions, requiring that the analyses are made on returned samples rather than in situ.
2. Extracellular Vesicles
• Extracellular Vesicles (EVs) are small vesicles with lipid bilayer that are
secreted from various cells under physiological and pathological
conditions and exist in the body fluids and cell culture supernatant.
• EVs contain nucleic acids and proteins, and act as mediators of
intercellular communication by entering the target cells.
• EVs include subtypes such as exosomes and microvesicles.
• They are involved in many physiological responses and diseases,
including cell differentiation, immune responses, infection, cancer,
cardiovascular diseases, and neurodegeneration.
3. Extracellular Vesicles
• EVs derived from mesenchymal stem cells are known to have
therapeutic potential, with several clinical trials ongoing.
• EV applications to drug delivery platforms have also been developed.
4. Glycans
• Glycans exist not only on the surface of cells, but also on the surface
of sEVs (small Extracellular Vesicles: EVs <200 nm in diameter) as
glycoproteins or glycolipids.
• Importance of glycans on EVs has been shown. For example,
glycocalyx on the cancer cell-derived EVs has been reported to involve
in organotropic determination in cancer metastases.
• Glycans on the EV have been reported to play important role in the
tuning of EV uptake.
TCI has many products related to glycans expressed on the EVs.
5. Glycolipid-related Glycans
• Glycan patterns are well known to change during various biological
events, which include cancer, inflammatory diseases, and immune
diseases, and the same applies to sEV surface glycans.
TCI can synthesize various glycans on the cell surface. We offers you
oligosaccharides which play important roles such as intercellular
recognition, adhesion, proliferation control and signaling.
10. Anti-glycolipid Antibodies
• Antibodies are proteins which are one of the components of the
immune system. The specificity of antibodies is likened to the
interaction between a key and a keyhole. Anti-glycolipid antibodies
can specifically recognize glycolipids.
• TCI mainly produce antibodies against glycolipids; Ganglio-series,
Globo-series, Lacto-series, and Neolacto-series.
• These antibodies can be used for immunohistochemistry, cell-
staining, flow cytometry, ELISA, TLC-immunostaining and other
methods.
• Our antibodies are very useful tools for analyzing the expression of
carbohydrate chains and their functions.
13. Lectins
• Lectins are highly specific carbohydrate-binding proteins of
nonimmune origin. Due to their ability to bind with cell-surface
glycoproteins and glycolipids, lectins could agglutinate cells; they also
could reversibly associate polysaccharides and glycoproteins in
solution.
• Lectin has long been well-known as tools for detection and analysis of
functional oligosaccharides in the glycoscience field. Recombinant
lectins show better stability compared with lectins extracted from
natural resources.
• TCI offers not only recombinant lectins but also chemically modified
lectins such as several types of biotinylated lectin and lectin-agarose
for detection and capturing of glycoconjugates.
16. Lectins
Products
R0225 Recombinant Polyporus squamosus lectin (= rPSL1a) expressed in E. coli
R0226 Recombinant Laetiporus sulphureus lectin N-Terminal Domain (= rLSL-N) expressed in E. coli
R0227 Recombinant Marasmius oreades agglutinin (= rMOA) expressed in E. coli
R0228 Recombinant Sclerotium rolfsii lectin (= rSRL) expressed in E. coli
R0229 Recombinant Griffithsia sp. lectin (= rGRFT) expressed in E. coli
L0169 Lectin, Fucose specific (= AOL) from Aspergillus oryzae
17. Endoglycosidases
• Endoglycoceramidase (EGCase) is a glycolipid-specific hydrolase that
cleaves the glycosidic linkage between oligosaccharide and ceramide
of various glycosphingolipids (GSLs).
• Recombinant EGCase (rEGCase) is activated under a detergent-
dependent condition. In contrast, Activator II is capable of inducing
activity of EGCases without any detergent reagents.
• By the use of Activator II, GSLs on cell surfaces of living cells could be
hydrolyzed without cell disruption caused by detergent.
18. Endoglycosidases and Related Enzymes
Products
R0240 rEGCase I
R0241 rEGCase I assisted by Activator II
R0242 rEGCase II
R0243 rEGCase II assisted by Activator II
A1651 Endo-M (= endo-β-N-Acetylglucosaminidase)
G0365 Glycosynthase (= Endo-M-N175Q)
E1339 Endo-M-W251N
A1844 endo-α-N-Acetylgalactosaminidase (=Endo-α)
K0069 Keratanase II