This is a Powerpoint made by a myself for the PG seminar in front of Professors. For the preparation standard books were followed and guidance from expertise was taken. This will be helpful for UG and PG students of Medical and life science students.
2. Overviews
• Introduction
• Metabolism Vs. cell signaling
• Characteristic features of signal transduction
• Signal transduction via different mechanisms
• Receptors
3. Introduction
The cell senses extracellular signals
• Hormones, pheromones, heat, light, osmotic pressure,
concentration change of glucose, Na+, K+ etc
And commutes them into intracellular signals
• Involves same types of molecular modification as that
of metabolism
• Production and degradation of substances, activation or
inhibition of reactions
4. What is the difference then ??
Metabolism Signaltransduction
Provides mass transfer Provides information transfer
Quantity of converted material µM
or mM
10 to 104 molecules/cell
A metabolic network is determined
by present set of enzymes
A signal pathway may assemble
dynamically
9. Receptor ligand interaction can be
quantified
• Scatchard analysis quantifies the receptor
ligand interaction
• Hormone/ligand (L) binds with receptor R
specifically and tightly
14. G protein coupled receptor
• Member of a guanosine nucleotide binding protein
• Three essential components define GPCR (plasma
membrane receptor, G protein and effector enzyme or
ion channel in the plasma membrane )
• The human genome encodes about 350 GPCRs for
detecting hormones, growth factors and other
endogenous ligands
20. Role of phosphodiesterase
• Hydrolytic enzyme ensures the turnovers of
the signal (cAMP).
• > 11 members of phosphodiesterase
• Inhibitors of phosphodiesterase- methylated
xanthine derivatives – increase cAMP level
21. Diacylglycerol, inositol triphosphate and
calcium have related roles in second
messengers
• Phosphatidylinositol 4,5 bisphate
Phospholipase C
Inositol triphosphate + 1,2 Diacyl glycerol
22.
23. Some signals that act through PLc, IP3 &
Ca++
Source: Lehninger′s Biochemistry
24. Calmodulin
• Most important Ca2+
binding protein
• Binds four Ca2+ in a
cooperative manner
• Stimulus- increase
intracellular Ca2+-
Calcium calmodulin
complex-change in
conformation-activates
CaM kinase-
Phosphorylation of target
proteins
25.
26. 2.Receptor tyrosine Kinase
• α subunit –extracellular
• β subunit-
transmembrane
• Autophosphorylation of
beta subunits
• Receptor tyrosine kinase
also phosphorylates the
insulin receptors
28. JAK STAT signaling system also involves
Tyrosine Kinase activity
• No intrinsic protein kinase activity but when
occupied by their ligand, bind a cytosolic
tyrosine kinase
• For example: system that regulates the
formation of erythrocytes in mammals
• Cytokines and erythropoietin
29. JAK STAT transduction contd…
• Dimerized receptor
activates Janus Kinase (
JAK),
• Activated JAK
phosphorylates several
Tyr residues in
cytoplasmic domain
• SH2 domain in STAT5
binds p-Tyr residues
• Nucleus : expression of
gene
30. 3. Cyclic GMP and Receptor guanylyl
cyclase & protein kinase G
• Guanylyl cyclase when activated convert
GTP to second messenger cyclic Guanosine
5′3′ monophosphate (cGMP)
31. Fig:Two types of guanylyl cyclase that participate in signal transduction
32. Factors that increase cGMP
• Nitric oxide
• Nitroglycerin
• Nitroprusside
• Na nitrite
• Na azide
(potent vasodilators)
33. 4.Gated ion channels
• Certain cells in multicellular organism are
excitable
• Play central role in nerve conduction, muscle
contraction, hormone secretion, sensory processes
and learning and memory.
• Excitability of these cells depends on ion
channels
• Signal transducers provide a regulated path for
movement of inorganic ions Na+, K+, Ca++ and Cl-
35. Voltage gated ion channels produce
neuronal action potentials
• Signaling in the nervous system is
accomplished by network of neurons which
carry electrical impulse from cell body through
axons.
• The electrical signals triggers the release of
neurotransmitter molecules at the synapse
carrying the signal to the next cell.
• Three types of voltage gated ion channels
(Na+, K+ and Ca++)
36. Fig: Role of voltage gated and
Ligand gated ion channels
In nerve impulse transmission
37. 5.Adhesion receptors/Integrins
• Proteins of plasma membrane that mediates the
adhesion of cells to each other and to the
extracellular matrix
• Carry signals in both directions across the
membrane
• 24 different integrins found having unique
functions
• Extracellular ligands interact with integrins are
collagen, fibrinogen, fibronectin & many other
types recognized by integrins : -Arg-Gly-Asp
(RGD)
39. Regulation of Transcription by nuclear
Hormone receptors
• Steroid, retinoid and thyroid hormone exert
effect by these mechanisms.
• Act in the nucleus to alter gene expression
• Steroid hormones (Estrogen, Progesterone
and cortisol )- hydrophobic-transported in a
specific carrier proteins to the target tissue
• In target cells, these are absorbed by simple
diffusion and bind to specific receptors in the
nucleus
41. Hormone action & signal transduction
Source: Harper′s Illustrated Biochemistry
42. Ligand receptor complex is the trigger
for Group I hormones
Fig: regulation of gene expression by Thyroid and Glucocorticoid hormones
glucocoricoid
Thyroid &retinoid
How the modifications in the signal transduction are similar to that of metabolism???
Direct signaling occurs across the gap junctions…….paracrine means signal produced from a cell and acts on adjacent cells.eg: growth factor and clotting factor.
Autocrine----acts on the same cell from where signal is produced..eg: interleukin 1 in monocytes.
Five features of signal transduction : specificity, amplification, desensitization, integration and the modularity
Example of TRH and Epinephrine to describe specificity
DESENsitization of beta adrenergic receptor on continuous supply of epinephrine
Scatchard analysis is reliable for the simplest cases but when the receptor is an allosteric protein the curve the plot deviate from linearity
Ligand binds with the receptor with non covalent forces s/a Hydrogen bonds, hydrophobic interaction…..
Like enzyme substrate binding the ligand binding is saturable…..radiolabelled ligand is added to the fixed amt of receptor….
A plot of RL vs. L+ RL is hyperbolic .rising toward a maximum for RL as the receptor becomes saturated.
Linear plot of Rl/L vs RL gives Kd and Bmax for the receptor hormone complex.
Six general types of signal transducers
Seven tM helical segments, G protein that cycles between active ( GTP bound ) and inactive ( GDP bound)
Human genome encodes >350 GPCRs for hormones, growth factors and other endogenous ligands including olfaction and gustation
GPCRS where CAMP as a second messenger system
In prokaryotes cAMP binds to catabolic regulatory proteins, binds directly to DNA and influences gene expression
IN eukaryotes----- cAMP dependent protein kinase----phosphorylation of the target proteins
What is the role of GTPase activity in the mechanism of cholera toxin and pertusis?????/
b. Crystal structure of protein kinase A (R2C2)
Small protein – it bounds four Ca2+ in a cooperative manner and interacts with a variety of proteins to regulate their activities
Insulin receptors have half life of 6-12 hrs. synthesized as a single peptide and cleaved to alpha and beta subunits.20,000 receptor per cell in mammals.
Developmental signal = Erythropoietin (165aa) protein produced in the kidneys
A hormone lectin also acts by same mechanisms.
STAT ( Signal transducers and activators of transcription),NLS ( Nuclear Localization Signal), growth factor receptor bound protein(grb2)
SH2( Src Homology protein)
What is the basic difference between these two types of receptors???? In the target cells NO binds with the heme group of the guanylyl cyclase and activates CGMp production.
Guanylin??? A peptide present in the stable toxin of the E.coli and other Gram negative bacteria …..increase cl- release & decrease water reabsortion
Excitable : they can detect any external signals convert it into electrical signal.
Na K ATPase generates transmembrane electrical potential of about -60mv (inside negative).b.Blue arrows shows the direction of ions moving spontaneously across the plasma membrane.It is driven by combination of chemical and electrical gradients.
Chemical gradients drives the Na and Ca inward (Depolarization) and K outward ( hyperpolarizaion)whereas electrical gradients drives Cl against its concn gradients producing depolarization
Axon – elongated cytoplasmic extension.
Na+ channels are voltage gated whereas acetylcholine receptor is ligand gated ion channel
Stimulus --
All integrins have 1 alpha and 1 beta subunits……….alpha subunit binds with the divalent cations Ca2+ (intrinsic to ligand binding activity).
In inactive state the extracellular domain is in folded state…when ligand( collagen, heparan sulphate) binds it straitens the extracellular domain moves the cytosolic tail apart interacting with the protein TALIN (triggers inside out signaling)….
GRE= Glucocorticoid Response Element, TRE= Thyroid response Element…both are group I hormones. For glucocorticoid the GR is present in the cytoplasm with a chaperon protein HSP90……when ligand binds the hsp get dissociated ….transcription coregulators…enhances the transcription rate…