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A Deep Learning Approach to Antibiotic Discovery
PR-246
주성훈, Samsung SDS
2020. 5. 10.
A deep learning system for differential diagnosis of skin diseases
Google Health
1. Research Background
1. Research Background
Background : computer aided diagnosis
• diagnosis assistant system
Classification ( / , )
Segmentation ( , )
Object Detection ( , )
Classification
3/17
1. Research Background
: Multimodal task
https://ai.googleblog.com/2020/04/a-step-towards-protecting-patients-from.html
• Multimodal classification problems
• PR218 - MFAS: Multimodal Fusion Architecture Search
•
4/17
1. Research Background
Introduction
• What & Why
• Teledermatology ( )
•
- fourth leading cause of nonfatal disease burden
- affecting 30-70% of individuals and prevalent in all geographies and age groups.
• “store-and-forward teledermatology”
https://www.slideshare.net/Prezi22/powerpoint-4mb
5/17
1. Research Background
Background
• Computer vision deep learning model
• : dermatoscope
• , Dermatoscope
• digital device
• / (Esteva et al. Nature 2017)
• Onychomycosis ( ) (Han et al. PlosOne 2018)
• 198 (Yang et al., 2018 CVPR)
•
• , ranked list (differential diagnosis)
Esteva et al. Yang et al.
6/17
1. Research Background
Objective & Approach :
• We developed a deep learning system (DLS) to identify 26 of the most common skin
conditions in adult cases that were referred for teledermatology consultation.
1) 27 class (Differential diagnosis)
2) Image + additional data ( , )
3) 6
4) , ,
7/17
2. Methods
2. Methods
Dataset & model system architecture & training
•
•
•
•
•
•
•
•
•
•
•
•
•
9/17
2. Methods
Split dataset & data labeling
14 pool (5-30 , 9.1 ) 3
rotation labeling
case , metadata 3
Aggregation class score soft label
Differential diagnosis
Case마다 1~29명의 피부과 전문의 (미국 38명, 인도 5명)이 labeling
10/17
3. Experimental Results
3. Experimental Results
Deep learning system
• validation set accuracy averaged sensitivity
• , Top-3 accuracy sensitivity, AO
DLS: 모델 (deep learning system)
Derm: 피부과 전문의 (dermatologists)
PCP: 주치의 (Primary care physicians)
NP: 임상 간호사 (nurse practitioners)
* Webber et al., A Similarity Measure for Indefinite Rankings, ACM Transactions on Information Systems, 2010
*
12/17
3. Experimental Results
Subgroup analysis
• subcategory ,
DLS: 모델 (deep learning system)
Derm: 피부과 전문의 (dermatologists)
PCP: 주치의 (Primary care physicians)
NP: 임상 간호사 (nurse practitioners)
Malignant -> 생검 필요
Non-infectious 에서 사용되는 topical steroid 처방이 Infectious 에서는 악화시킬 수 있음
Infectious -> KOH검사 필요
• subcategory
병의 원인이 다르기 때문에 각기 다른 1차 치료가 필요함
13/17
3. Experimental Results
Deep learning system
• Integrated gradients , focus
• hair loss ,
14/17
3. Experimental Results
Importance of input data
15/17
• Clinical metadata self-reported skin problem
•
Self-reported skin problem = One of: [Acne | Growth or mole | Hair loss | Hair or nail problem | Hair problem | Nail problem | Pigmentary problem | Rash | Other | Unknown]
plateaued
4. Conclusion
4. Conclusions 17/17
Thank you.
• ,
.
• , 26
.
• 1 ,
.
2. Methods
data labeling

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PR-246: A deep learning system for differential diagnosis of skin diseases

  • 1. A Deep Learning Approach to Antibiotic Discovery PR-246 주성훈, Samsung SDS 2020. 5. 10. A deep learning system for differential diagnosis of skin diseases Google Health
  • 3. 1. Research Background Background : computer aided diagnosis • diagnosis assistant system Classification ( / , ) Segmentation ( , ) Object Detection ( , ) Classification 3/17
  • 4. 1. Research Background : Multimodal task https://ai.googleblog.com/2020/04/a-step-towards-protecting-patients-from.html • Multimodal classification problems • PR218 - MFAS: Multimodal Fusion Architecture Search • 4/17
  • 5. 1. Research Background Introduction • What & Why • Teledermatology ( ) • - fourth leading cause of nonfatal disease burden - affecting 30-70% of individuals and prevalent in all geographies and age groups. • “store-and-forward teledermatology” https://www.slideshare.net/Prezi22/powerpoint-4mb 5/17
  • 6. 1. Research Background Background • Computer vision deep learning model • : dermatoscope • , Dermatoscope • digital device • / (Esteva et al. Nature 2017) • Onychomycosis ( ) (Han et al. PlosOne 2018) • 198 (Yang et al., 2018 CVPR) • • , ranked list (differential diagnosis) Esteva et al. Yang et al. 6/17
  • 7. 1. Research Background Objective & Approach : • We developed a deep learning system (DLS) to identify 26 of the most common skin conditions in adult cases that were referred for teledermatology consultation. 1) 27 class (Differential diagnosis) 2) Image + additional data ( , ) 3) 6 4) , , 7/17
  • 9. 2. Methods Dataset & model system architecture & training • • • • • • • • • • • • • 9/17
  • 10. 2. Methods Split dataset & data labeling 14 pool (5-30 , 9.1 ) 3 rotation labeling case , metadata 3 Aggregation class score soft label Differential diagnosis Case마다 1~29명의 피부과 전문의 (미국 38명, 인도 5명)이 labeling 10/17
  • 12. 3. Experimental Results Deep learning system • validation set accuracy averaged sensitivity • , Top-3 accuracy sensitivity, AO DLS: 모델 (deep learning system) Derm: 피부과 전문의 (dermatologists) PCP: 주치의 (Primary care physicians) NP: 임상 간호사 (nurse practitioners) * Webber et al., A Similarity Measure for Indefinite Rankings, ACM Transactions on Information Systems, 2010 * 12/17
  • 13. 3. Experimental Results Subgroup analysis • subcategory , DLS: 모델 (deep learning system) Derm: 피부과 전문의 (dermatologists) PCP: 주치의 (Primary care physicians) NP: 임상 간호사 (nurse practitioners) Malignant -> 생검 필요 Non-infectious 에서 사용되는 topical steroid 처방이 Infectious 에서는 악화시킬 수 있음 Infectious -> KOH검사 필요 • subcategory 병의 원인이 다르기 때문에 각기 다른 1차 치료가 필요함 13/17
  • 14. 3. Experimental Results Deep learning system • Integrated gradients , focus • hair loss , 14/17
  • 15. 3. Experimental Results Importance of input data 15/17 • Clinical metadata self-reported skin problem • Self-reported skin problem = One of: [Acne | Growth or mole | Hair loss | Hair or nail problem | Hair problem | Nail problem | Pigmentary problem | Rash | Other | Unknown] plateaued
  • 17. 4. Conclusions 17/17 Thank you. • , . • , 26 . • 1 , .