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Pro-active solutions for higher reproducibility
of scientific experiments
Tomasz Miksa
Vienna University of Technology
& SBA Research, Austria
Tomasz Miksa tmiksa@sba-research.org
Agenda
 Replicability
 VFramework
 Context Model
 Machine Actionable Data Management Plans
 Conclusions
Tomasz Miksa tmiksa@sba-research.org
Replicability
Re-executed
experiment
Original
experiment
• Can I reuse her workflow?
• Do the results match?
• Have I done it correctly?
Tomasz Miksa tmiksa@sba-research.org
Challenge
Tomasz Miksa tmiksa@sba-research.org
VFramework
Tomasz Miksa tmiksa@sba-research.org
Context Model
Workflow
definition
Validation
metrics
ProvenanceSoftware
dependenciesFile formats
Tomasz Miksa tmiksa@sba-research.org
Tomasz Miksa tmiksa@sba-research.org
Tomasz Miksa tmiksa@sba-research.org
ADDED
NOT USED
Tomasz Miksa tmiksa@sba-research.org
How does it make us pro-active?
 External service monitoring
- check availability and functional conformance
- deploy mock-ups
- notification mechanisms using context descriptions
 Context Model monitoring
- identify all workflows impacted by change, e.g. obsolescence
 Evaluation of impact of changes
- re-execute modified workflows and validate them
Tomasz Miksa tmiksa@sba-research.org
Machine-actionable
Data Management Plans
 DMPs
- describe research data
- required by funders
- completed using checklists
- hand written
- vague
 Machine-actionable DMPs
- future work
- enable pro-active data management
Tomasz Miksa tmiksa@sba-research.org
Actionable DMPs integrate domains and tools
Tomasz Miksa tmiksa@sba-research.org
Actionable DMPs integrate domains and tools
Tomasz Miksa tmiksa@sba-research.org
Conclusions
 We have developed concepts and tools for
- context description
- information capturing
- service monitoring
 We need to integrate them and
deploy monitoring and
risk mitigation scenarios

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Unleash Your Potential - Namagunga Girls Coding Club
 

Pro-active solutions for higher reproducibility of scientific experiments - Acting on Change 2016

Editor's Notes

  1. I would like to present my understanding of what an actionable and machine-readable DMP is what is its role and how it integrates with existing solution DMP is not to substitute workflow engine, virtualisation, containers, virtual environments, interactive notebooks DMP should be a single point of information about the processing done in the expeirment. DMPs can be hosted at repositories DMP groups all this information and allows exchange of information between systems DMP is machine-readable, but information contained inside can be displayed for reporting to the user