Good Stuff Happens in 1:1 Meetings: Why you need them and how to do them well
BLAST METODOLOGY
1. GISAID
ALL MOZ
SEQUENCES
FROM 2015
TO 2023
Period: 2015 – 2023
By: Collection date
MOZAMBIQUE AFRICA
Dataset Segment N N
H1N1pdm09 HA 56 2724
NA 56 2725
H3N2 HA 64 2991
NA 64 2991
FluB_VIC HA 34 578
NA 34 578
FluB_YAG HA 22 473
NA 22 473
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2. MSA (MOZ DATASETS) -
MAFFT ONLINE – default
settings
ModelFinder -
IQTREE
ML TREES - SH-aLRT
test and ultrafast
bootstrap with 1000
replicates
TREE TOPOLOGY
ANALYSIS – (SH-aLRT >=
80% and UFbootstrap
>= 95%)
BLAST USING ONE
SEQUENCE FROM THE
BEST SUPPORTED
CLADES (>80/>95)
MY_DATABASE
Dataset Segme
nt
N
H1N1 HA 1241
NA
H3N2 HA 1398
NA
FluB_VIC HA 655
NA
FluB_YAG HA 590
NA