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COVID-19: Coronavirus
Vaccine
Presented by:Tameem Ahmed
INTRODUCTION
• Coronavirus Disease 2019 (COVID-19) is caused by Severe Acute Respiratory
Syndrome Coronavirus 2 (SARS-CoV-2), a newly emerged coronavirus, and has
been pandemic
• Since March 2020 and led to many fatalities.Vaccines represent the most efficient
means to control and stop the pandemic of COVID-19. However, currently there is
no effective COVID-19 vaccine approved to use worldwide except for two human
adenovirus vector
• vaccines, three inactivated vaccines, and one peptide vaccine for early or limited
use in China and Russia.
INACTIVATEDVACCINES
When a new pathogen emerges, for example SARS-CoV, due to the lack of
understanding of the pathogenesis and therefore lengthy time to
development of efficacious therapeutics, the rapid and simple development of
a vaccine against the emerging infectious disease is urgently needed.
Therefore, the classic approach using inactivated, cell-culture based viruses is
likely to be the fastest and easiest way for CoV vaccine development, as we
have the experience of many commercial inactivated vaccines against other
viral diseases. Inactivated vaccines may maintain the normal conformation of
the S protein.Various studies have demonstrated that vaccines based on
whole, inactivated SARS-CoV potently elicit considerable levels of neutralizing
antibodies in animal models
SARS-CoV InactivatedVaccines
Evaluations of a SARS-CoV whole virus vaccine double inactivated with
formalin and UV irradiation in ferrets and nonhuman primates showed
protection against infection by SARS-CoV-specificT cell and neutralizing
antibody responses.The immunogenic profile elicited by double-inactivated
SARSCoV vaccine might be not comparable to that generated by vaccine
inactivated by just one approach. However, the challenged animals exhibited a
Th2-type immunopathologic lung disease, whereas the pathologic changes
seen in control groups lacked the eosinophil prominence (Tseng et al., 2012),
which indicated that hypersensitivity to SARS-CoV components was induced.
This may be called vaccine-associated disease enhancement (VADE) (74),
which is similar to that seen with the RSV vaccine. Addition of an adjuvant in
inactivated vaccines helped alleviate eosinophilic immune pathology in the
lungs.
LIVE ATTENUATEDVACCINES
With a long history of successful applications, such as the smallpox and polio
vaccines, live attenuated vaccines are similar to natural infections with a wide range
of natural viral antigen production over a long period of time and are often more
immunogenic than non-replicating vaccines . CoV E protein induces endoplasmic
reticulum stress and inflammatory cytokine overexpression in host cells, causing lung
tissue damage, edema, and progression to acute respiratory distress syndrome
(ARDS). CoV lacking E protein has abnormal morphology and function due to
assembly failure and maturation defects, and has been shown to inhibit the host cell’s
stress response
SARS-CoVVaccines
SARS-CoV live attenuated vaccine with E gene deletion (SARSCoV- DE) produced neutralizing
antibodies and CD4+ with CD8+T cell responses in mice and ferrets, and reduced
inflammatory cell infiltration, edema, and cell destruction.When the full-length E gene was
deleted or its PDZ-binding motif (PBM) was mutated, revertant viruses either evolved a novel
chimeric gene including PBM, or restored the sequence of the PBM in the E protein,
respectively.Therefore, the modified virus with partial deletion of E gene without affecting
PBM may be a live attenuated SARS-CoV vaccine candidate. Additionally, amino acid
substitutions in the transmembrane domain (TMD) of E protein to eliminate the ion channel
activity could result in virus attenuation, which alleviated pulmonary edema in infected mice.
Another SARS-CoV vaccine candidate with simultaneous deletion of 8–12 amino acids in both
C-termini of the E and nsp1 genes enhanced IFN responses and decreased viral titers in mice
SUBUNITVACCINES
Subunit vaccines are comprised of purified immunogenic proteins or peptides
derived from viruses. In contrast with traditional vaccines, subunit vaccines
have less side effects and higher safety at the injection site. However, whether
the immunological memory will be formed in the correct manner is not
guaranteed.Therefore, adjuvants as well as vaccine delivery systems are
needed to enhance immune responses
SARS-CoV-2 SubunitVaccines
B-cell andT-cell epitopes are highly conserved between SARSCoV-2 and
SARS-CoV.The vaccine against a conserved epitope may elicit cross-immune
responses to mutant viruses . Analysis ofT-cell and B-cell epitopes of SARS-
CoV revealed that viral mutations mainly targeted epitopes that were highly
expressed by MHC-I, while no mutations were found near RBD. In combination
with other epitopes, recombinant SARS-CoV-2 S protein is a feasible vaccine
candidate.
VIRUS-LIKE PARTICLES (VLPS) AND
BACTERIA-LIKE PARTICLES (BLPS)
Virus-like particles (VLPs) are similar to intact virions in size and morphology.
Without a viral genome,VLPs are unable to replicate or reverse mutate,
suggesting better safety, especially for viruses that cause high morbidity and
mortality.They may induce strong and broad humoral and cellular immune
responses
SARS-CoV-2Vaccines
FifteenVLP COVID-19 vaccines are in development. Among them, the vaccine
developed by Medicago Inc. is the earliest and started in phase I trials in July
2020.The phase II/III trial is expected to start in November.This is a plant-
derivedVLP vaccine with GSK or Dynavax adjuvants. It uses the same platform
as vaccine candidates for flu, rotavirus, norovirus,West Nile virus, and cancer.
NUCLEIC ACIDVACCINES
Nucleic acid vaccines are genetic vaccines consisting only of DNA or RNA,
which are taken up and translated into protein by host cells and elicit immune
responses. Because they contain no viral coat, naked nucleic acids are not
generally subject to preexisting immunity that can hamper the clinical efficacy
of recombinant virus vaccines. In terms of higher safety and lower cost of
production, nucleic acid vaccines have some major advantages over other
types.
DNAVaccines
SARS-CoVVaccines
S Gene
SARS-CoV S DNA vaccines produced high levels of IgG against S protein (26)
and CD4+ and CD8+T cell responses . Furthermore, serum S protein-specific
IgG1 and IgA in the respiratory tracts of mice were significantly elevated
through PEI/pci-S complexes formed by polyethyleneimine (PEI) and SARS
DNA vaccine, along with increases in IFN-g,TNF-a, and IL-2 expression.
N Gene
Raghuwanshi et al. found that plasmid DNA loaded biotinylated
chitosan nanoparticles for nasal immunization against N protein
induced N protein-specific IgG, mucosal IgA, and IFN-g expression in
mice.When combined with CD40 monoclonal antibody, this vaccine
induced higher antibody titers through intramuscular administration
than by intranasal vaccination. Following intranasal delivery of naked
pDNA, no mucosal and systemic immune responses were detected.
AdenovirusVectoredVaccines
SARS-CoVVaccines
Human adenovirus type 5 (HAdV-5) vectored vaccines have been extensively
developed. HAdVs can effectively induce mucosal immune responses, and have been
widely studied for their wide host range, strong infectivity, high protein expression,
and high safety when imbued with a replication defect. Compared with intramuscular
injection, both intranasal and sublingual administration of recombinant adenoviruses
encoding SARS-CoV spike protein elicited stronger CD8+ cell response and higher
levels of neutralizing antibodies and IgA withoutVADE
MVAVectoredVaccines
SARS-CoVVaccines
Modified vaccinia virus Ankara (MVA) is replication-defective and used for viral
antigen expression in mammalian cells. MVA stimulates inflammatory
cytokines and chemokines and migration of lymphocytes and monocytes,
making it advantageous in vaccine applications. MVA-SARS-CoV produced
effective neutralizing antibodies with high immunogenicity in mice, rabbits,
and monkeys, and protected against challenge in mice
THE CASE FORT CELLS
Multiple lines of evidence support important roles forT cells in productive
immune responses to COVID-19. In most SARS patients, B cell and nAB
responses were relatively short lived (1–2 years) and prone to antigen escape,
raising the possibility of re-infection. In contrast,T cell memory in survivors
was long-lived (>6–17 years) (4–7, 19). It is well-known thatT cells can engage
antigen epitopes that are not targeted by B cells, including those derived from
intracellular proteins, to Sauer and Harris COVID-19Vaccine Should EngageT
Cells provide broader protection which the virus can less easily circumvent
through mutation (6).T cells are especially necessary to clear severe virus
infections. Altogether, in addition to nAB, eliciting broad and long-lasting
antiviral immunity requires the co-enrollment of CD4 and CD8T cells and the
generation of effectiveT cell memory
Contd.
Anecdotally, COVID-19 patients enter the hospital lymphopenic
but begin to have increased respiratory difficulties as their
lymphocyte counts start to recover. Consistent with this, SARS-
CoV-2 reactive CD4 and CD8T cells capable of producing effector
andTH1 cytokines were found in patients with severe COVID (37).
Another study found that SARS-CoV- 2 specificT cells in acute
moderate or severe COVID-19 were more activated and
proliferating than those in convalescent patients, whoseT cells had
more memory-like phenotypes
CONCLUSION
Altogether, the data reviewed here point toward an important need to design
COVID-19 vaccines which co-engageT cells in addition to B cells.They also
highlight the benefit of decoding matchedT cell reactivities, phenotypes and
antigenic epitopes in the context of the major human HLA haplotypes for
development of both vaccines andTCR based diagnostics for this devastating
disease.

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Covid vaccine

  • 2. INTRODUCTION • Coronavirus Disease 2019 (COVID-19) is caused by Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), a newly emerged coronavirus, and has been pandemic • Since March 2020 and led to many fatalities.Vaccines represent the most efficient means to control and stop the pandemic of COVID-19. However, currently there is no effective COVID-19 vaccine approved to use worldwide except for two human adenovirus vector • vaccines, three inactivated vaccines, and one peptide vaccine for early or limited use in China and Russia.
  • 3. INACTIVATEDVACCINES When a new pathogen emerges, for example SARS-CoV, due to the lack of understanding of the pathogenesis and therefore lengthy time to development of efficacious therapeutics, the rapid and simple development of a vaccine against the emerging infectious disease is urgently needed. Therefore, the classic approach using inactivated, cell-culture based viruses is likely to be the fastest and easiest way for CoV vaccine development, as we have the experience of many commercial inactivated vaccines against other viral diseases. Inactivated vaccines may maintain the normal conformation of the S protein.Various studies have demonstrated that vaccines based on whole, inactivated SARS-CoV potently elicit considerable levels of neutralizing antibodies in animal models
  • 4.
  • 5. SARS-CoV InactivatedVaccines Evaluations of a SARS-CoV whole virus vaccine double inactivated with formalin and UV irradiation in ferrets and nonhuman primates showed protection against infection by SARS-CoV-specificT cell and neutralizing antibody responses.The immunogenic profile elicited by double-inactivated SARSCoV vaccine might be not comparable to that generated by vaccine inactivated by just one approach. However, the challenged animals exhibited a Th2-type immunopathologic lung disease, whereas the pathologic changes seen in control groups lacked the eosinophil prominence (Tseng et al., 2012), which indicated that hypersensitivity to SARS-CoV components was induced. This may be called vaccine-associated disease enhancement (VADE) (74), which is similar to that seen with the RSV vaccine. Addition of an adjuvant in inactivated vaccines helped alleviate eosinophilic immune pathology in the lungs.
  • 6. LIVE ATTENUATEDVACCINES With a long history of successful applications, such as the smallpox and polio vaccines, live attenuated vaccines are similar to natural infections with a wide range of natural viral antigen production over a long period of time and are often more immunogenic than non-replicating vaccines . CoV E protein induces endoplasmic reticulum stress and inflammatory cytokine overexpression in host cells, causing lung tissue damage, edema, and progression to acute respiratory distress syndrome (ARDS). CoV lacking E protein has abnormal morphology and function due to assembly failure and maturation defects, and has been shown to inhibit the host cell’s stress response
  • 7. SARS-CoVVaccines SARS-CoV live attenuated vaccine with E gene deletion (SARSCoV- DE) produced neutralizing antibodies and CD4+ with CD8+T cell responses in mice and ferrets, and reduced inflammatory cell infiltration, edema, and cell destruction.When the full-length E gene was deleted or its PDZ-binding motif (PBM) was mutated, revertant viruses either evolved a novel chimeric gene including PBM, or restored the sequence of the PBM in the E protein, respectively.Therefore, the modified virus with partial deletion of E gene without affecting PBM may be a live attenuated SARS-CoV vaccine candidate. Additionally, amino acid substitutions in the transmembrane domain (TMD) of E protein to eliminate the ion channel activity could result in virus attenuation, which alleviated pulmonary edema in infected mice. Another SARS-CoV vaccine candidate with simultaneous deletion of 8–12 amino acids in both C-termini of the E and nsp1 genes enhanced IFN responses and decreased viral titers in mice
  • 8. SUBUNITVACCINES Subunit vaccines are comprised of purified immunogenic proteins or peptides derived from viruses. In contrast with traditional vaccines, subunit vaccines have less side effects and higher safety at the injection site. However, whether the immunological memory will be formed in the correct manner is not guaranteed.Therefore, adjuvants as well as vaccine delivery systems are needed to enhance immune responses
  • 9. SARS-CoV-2 SubunitVaccines B-cell andT-cell epitopes are highly conserved between SARSCoV-2 and SARS-CoV.The vaccine against a conserved epitope may elicit cross-immune responses to mutant viruses . Analysis ofT-cell and B-cell epitopes of SARS- CoV revealed that viral mutations mainly targeted epitopes that were highly expressed by MHC-I, while no mutations were found near RBD. In combination with other epitopes, recombinant SARS-CoV-2 S protein is a feasible vaccine candidate.
  • 10. VIRUS-LIKE PARTICLES (VLPS) AND BACTERIA-LIKE PARTICLES (BLPS) Virus-like particles (VLPs) are similar to intact virions in size and morphology. Without a viral genome,VLPs are unable to replicate or reverse mutate, suggesting better safety, especially for viruses that cause high morbidity and mortality.They may induce strong and broad humoral and cellular immune responses
  • 11. SARS-CoV-2Vaccines FifteenVLP COVID-19 vaccines are in development. Among them, the vaccine developed by Medicago Inc. is the earliest and started in phase I trials in July 2020.The phase II/III trial is expected to start in November.This is a plant- derivedVLP vaccine with GSK or Dynavax adjuvants. It uses the same platform as vaccine candidates for flu, rotavirus, norovirus,West Nile virus, and cancer.
  • 12. NUCLEIC ACIDVACCINES Nucleic acid vaccines are genetic vaccines consisting only of DNA or RNA, which are taken up and translated into protein by host cells and elicit immune responses. Because they contain no viral coat, naked nucleic acids are not generally subject to preexisting immunity that can hamper the clinical efficacy of recombinant virus vaccines. In terms of higher safety and lower cost of production, nucleic acid vaccines have some major advantages over other types.
  • 13. DNAVaccines SARS-CoVVaccines S Gene SARS-CoV S DNA vaccines produced high levels of IgG against S protein (26) and CD4+ and CD8+T cell responses . Furthermore, serum S protein-specific IgG1 and IgA in the respiratory tracts of mice were significantly elevated through PEI/pci-S complexes formed by polyethyleneimine (PEI) and SARS DNA vaccine, along with increases in IFN-g,TNF-a, and IL-2 expression.
  • 14. N Gene Raghuwanshi et al. found that plasmid DNA loaded biotinylated chitosan nanoparticles for nasal immunization against N protein induced N protein-specific IgG, mucosal IgA, and IFN-g expression in mice.When combined with CD40 monoclonal antibody, this vaccine induced higher antibody titers through intramuscular administration than by intranasal vaccination. Following intranasal delivery of naked pDNA, no mucosal and systemic immune responses were detected.
  • 15. AdenovirusVectoredVaccines SARS-CoVVaccines Human adenovirus type 5 (HAdV-5) vectored vaccines have been extensively developed. HAdVs can effectively induce mucosal immune responses, and have been widely studied for their wide host range, strong infectivity, high protein expression, and high safety when imbued with a replication defect. Compared with intramuscular injection, both intranasal and sublingual administration of recombinant adenoviruses encoding SARS-CoV spike protein elicited stronger CD8+ cell response and higher levels of neutralizing antibodies and IgA withoutVADE
  • 16. MVAVectoredVaccines SARS-CoVVaccines Modified vaccinia virus Ankara (MVA) is replication-defective and used for viral antigen expression in mammalian cells. MVA stimulates inflammatory cytokines and chemokines and migration of lymphocytes and monocytes, making it advantageous in vaccine applications. MVA-SARS-CoV produced effective neutralizing antibodies with high immunogenicity in mice, rabbits, and monkeys, and protected against challenge in mice
  • 17. THE CASE FORT CELLS Multiple lines of evidence support important roles forT cells in productive immune responses to COVID-19. In most SARS patients, B cell and nAB responses were relatively short lived (1–2 years) and prone to antigen escape, raising the possibility of re-infection. In contrast,T cell memory in survivors was long-lived (>6–17 years) (4–7, 19). It is well-known thatT cells can engage antigen epitopes that are not targeted by B cells, including those derived from intracellular proteins, to Sauer and Harris COVID-19Vaccine Should EngageT Cells provide broader protection which the virus can less easily circumvent through mutation (6).T cells are especially necessary to clear severe virus infections. Altogether, in addition to nAB, eliciting broad and long-lasting antiviral immunity requires the co-enrollment of CD4 and CD8T cells and the generation of effectiveT cell memory
  • 18. Contd. Anecdotally, COVID-19 patients enter the hospital lymphopenic but begin to have increased respiratory difficulties as their lymphocyte counts start to recover. Consistent with this, SARS- CoV-2 reactive CD4 and CD8T cells capable of producing effector andTH1 cytokines were found in patients with severe COVID (37). Another study found that SARS-CoV- 2 specificT cells in acute moderate or severe COVID-19 were more activated and proliferating than those in convalescent patients, whoseT cells had more memory-like phenotypes
  • 19. CONCLUSION Altogether, the data reviewed here point toward an important need to design COVID-19 vaccines which co-engageT cells in addition to B cells.They also highlight the benefit of decoding matchedT cell reactivities, phenotypes and antigenic epitopes in the context of the major human HLA haplotypes for development of both vaccines andTCR based diagnostics for this devastating disease.