Open Science

Towards open science:
Accelerating and
expanding NASA’s
scientific impact
Chelle Gentemann (she/her)
@chellegentemann
www.github.com/cgentemann
What is open science?
“a collaborative culture enabled
by technology that empowers the
open sharing of data,
information, and knowledge
within the scientific community
and the wider public to
accelerate scientific research
and understanding.”
Ramachandran, R., Bugbee, K., & Murphy, K. J.
(Submitted 2020). Moving from Open Data to Open
Science. Earth and Space Science, (Gold Access
Journal)
(1) increasing the accessibility to the
scientific process and the
corresponding body of knowledge;
(2) making both the research
process and knowledge sharing
more efficient
(3) understanding and assessing
scientific impact through innovative
new metrics.
Designed to….
Ramachandran, R., Bugbee, K., & Murphy, K. J. (Submitted 2020). Moving from Open Data to Open
Science. Earth and Space Science, (Gold Access Journal)
Who gets to participate?
In open science, power dynamics change
& there is public documentation of all
contributions
Murphy, M. C., Mejia, A. F., Mejia, J., Yan, X., Cheryan, S., Dasgupta, N., et al. (2020). Open science,
communal culture, and women’s participation in the movement to improve science.
Proceedings of the National Academy of Sciences, 117(39), 24154–24164.
https://doi.org/10.1073/pnas.1921320117
Sometimes, science feel like a
fortress. Using data downloaded to a
local (closed) repository
Not sharing software
Running analysis on local
cyberinfrastructure
Publishing results in a
pay-wall journal
Project communications all
private (email)
Closed Research
Image: national geographic
Why is open science hard?
fotoseek.com
let go of
everything
you fear
Credit: Star Wars
Open Science
● Open data
● Permissively licensed
software public on GitHub
● Open Cyberinfrastructure
● Open access article with
containerized code
● Project communication on
GitHub & Discourse
● Mentorship
● Code of conduct
https://youtu.be/qwBvTT9h_Qs
A spectrum
of openness
Image credit: Pink Floyd
to accelerate
NASA science
Open Data
● DMP contents?
● Continue efforts to enable
access & usability (FAIR /
Cloud / DAACS)
● When is data made open?
What level of data is made
open? How is access
enabled? Permissive License?
● PI leadership &
communication
https://urbantide.com/fullstory2/2017/6/28/beyond-open-data-the-rise-of-data-sharing
EVS2 OMG! - that is some fast data
New scientist not part of OMG
Software 7-steps to openness- SMP contents?
1. Publicly visible source code (github)
2. Licensed for reuse
3. Accepting contributions
4. Open development
5. Open decision making
6. Multi-institution engagement
7. Retirement
https://coiled.io/blog/stages-of-openness/
Super
Open
Science
https://github.com/bsipocz
Open Cyberinfrastructure -
Science Data Platforms
● Support platform agnostic, open source
infrastructure solutions
● Challenge use of proprietary/platform specific
software
Image credit: https://2i2c.org/
A super computer behind every device
NSF
Jetstream
Pangeo GCP
2i2c AWS
Binder - interactive tutorials (containerized)
http://gallery.pangeo.io/
Open dissemination
● Publish peer-reviewed articles in open-access journals
● +provide link to software
● +provide binder-link to reproduce all results, figures, and tables
● Actively engage with the public by
○ Starting a science blog
○ Working on a citizen science project or supporting hack-a-thons
○ Sharing your results on social media: Twitter, Facebook, LinkedIn, YouTube
○ Be sure to cite data, software and documentation in journal articles
A holistic metric of openness?
“Not everything that can be counted counts, and not everything that
counts can be counted” - William Bruce Cameron
Altmetrics - capture the attention research receiving - part of the
solution?
We need a metric that captures openness of data,
software, infrastructure, dissemination.
https://www.cloverdx.com/hubfs/metrics.jpg
Open by Design
(1) Build an inclusive
community of scientists
advancing open science
(2) Incentivize openness
(3) Highlight early adopter
activities to motivate
broader community
(4) Coordinate -- move
forward together
Proposals: Plan and budget for openness
(1) What information does a DMP or SMP
contain? Where is information about
dissemination plans? Examples?
(2) Useful metrics?
(3) What criteria are included in the review
process (what information should be
provided by proposal?)
https://image.freepik.com/free-vector/follow-leader-concept_1025-106.jpg
Teams: Plan and budget for openness
(1) Open communication
(2) Open dissemination
(3) Shared resources
(4) Mentorship process
(5) Safe spaces
Open to
accelerate
science
“Give sufficient credit for
whatever one would like
to see shared, and
scientists will indeed
start sharing it” Bright &
Heesen
http://sootyempiric.blogspot.com/2020/11/the-head-and-heart-incentives-and-norms.html
1 of 23

Recommended

Open Knowledge Maps for the Wikiverse! by
Open Knowledge Maps for the Wikiverse!Open Knowledge Maps for the Wikiverse!
Open Knowledge Maps for the Wikiverse!Open Knowledge Maps
309 views16 slides
Data Science: History repeated? – The heritage of the Free and Open Source GI... by
Data Science: History repeated? – The heritage of the Free and Open Source GI...Data Science: History repeated? – The heritage of the Free and Open Source GI...
Data Science: History repeated? – The heritage of the Free and Open Source GI...Peter Löwe
1K views22 slides
Open Research: Manchester leading and learning by
Open Research: Manchester leading and learningOpen Research: Manchester leading and learning
Open Research: Manchester leading and learningCarole Goble
143 views17 slides
Open science platforms by
Open science platformsOpen science platforms
Open science platformsIrina Radchenko
1.8K views28 slides
'Scikit-project': How open source is empowering open science – and vice versa by
'Scikit-project': How open source is empowering open science – and vice versa'Scikit-project': How open source is empowering open science – and vice versa
'Scikit-project': How open source is empowering open science – and vice versaNathan Shammah
226 views48 slides
Leveraging the power of the web - Open Repositories 2015 by
Leveraging the power of the web - Open Repositories 2015Leveraging the power of the web - Open Repositories 2015
Leveraging the power of the web - Open Repositories 2015Kaitlin Thaney
4.6K views66 slides

More Related Content

Similar to Open Science

Scott Edmunds, ReCon 2015: Beyond Dead Trees, Publishing Digital Research Obj... by
Scott Edmunds, ReCon 2015: Beyond Dead Trees, Publishing Digital Research Obj...Scott Edmunds, ReCon 2015: Beyond Dead Trees, Publishing Digital Research Obj...
Scott Edmunds, ReCon 2015: Beyond Dead Trees, Publishing Digital Research Obj...GigaScience, BGI Hong Kong
1.6K views40 slides
Panel: The Global Research Platform: An Overview by
Panel: The Global Research Platform: An OverviewPanel: The Global Research Platform: An Overview
Panel: The Global Research Platform: An OverviewLarry Smarr
100 views11 slides
UKSG Conference 2017 Breakout - Advancing the Research Paper of the Future: c... by
UKSG Conference 2017 Breakout - Advancing the Research Paper of the Future: c...UKSG Conference 2017 Breakout - Advancing the Research Paper of the Future: c...
UKSG Conference 2017 Breakout - Advancing the Research Paper of the Future: c...UKSG: connecting the knowledge community
582 views30 slides
Building capacity for open science - COASP Meeting by
Building capacity for open science - COASP MeetingBuilding capacity for open science - COASP Meeting
Building capacity for open science - COASP MeetingKaitlin Thaney
18.9K views72 slides
Introducing the Whole Tale Project: Merging Science and Cyberinfrastructure P... by
Introducing the Whole Tale Project: Merging Science and Cyberinfrastructure P...Introducing the Whole Tale Project: Merging Science and Cyberinfrastructure P...
Introducing the Whole Tale Project: Merging Science and Cyberinfrastructure P...Bertram Ludäscher
684 views25 slides
Being an Open Scholar in a Connected World by
Being an Open Scholar in a Connected WorldBeing an Open Scholar in a Connected World
Being an Open Scholar in a Connected WorldStian Håklev
111 views99 slides

Similar to Open Science(20)

Scott Edmunds, ReCon 2015: Beyond Dead Trees, Publishing Digital Research Obj... by GigaScience, BGI Hong Kong
Scott Edmunds, ReCon 2015: Beyond Dead Trees, Publishing Digital Research Obj...Scott Edmunds, ReCon 2015: Beyond Dead Trees, Publishing Digital Research Obj...
Scott Edmunds, ReCon 2015: Beyond Dead Trees, Publishing Digital Research Obj...
Panel: The Global Research Platform: An Overview by Larry Smarr
Panel: The Global Research Platform: An OverviewPanel: The Global Research Platform: An Overview
Panel: The Global Research Platform: An Overview
Larry Smarr100 views
Building capacity for open science - COASP Meeting by Kaitlin Thaney
Building capacity for open science - COASP MeetingBuilding capacity for open science - COASP Meeting
Building capacity for open science - COASP Meeting
Kaitlin Thaney18.9K views
Introducing the Whole Tale Project: Merging Science and Cyberinfrastructure P... by Bertram Ludäscher
Introducing the Whole Tale Project: Merging Science and Cyberinfrastructure P...Introducing the Whole Tale Project: Merging Science and Cyberinfrastructure P...
Introducing the Whole Tale Project: Merging Science and Cyberinfrastructure P...
Bertram Ludäscher684 views
Being an Open Scholar in a Connected World by Stian Håklev
Being an Open Scholar in a Connected WorldBeing an Open Scholar in a Connected World
Being an Open Scholar in a Connected World
Stian Håklev111 views
Conducting open science: approaches, tools and practices by Web2Learn
Conducting open science: approaches, tools and practicesConducting open science: approaches, tools and practices
Conducting open science: approaches, tools and practices
Web2Learn413 views
Open science / open research by heila1
Open science / open researchOpen science / open research
Open science / open research
heila195 views
Open sciencerefresher2019 by heila1
Open sciencerefresher2019Open sciencerefresher2019
Open sciencerefresher2019
heila1125 views
Science 2.0 and language technology by fridolin.wild
Science 2.0 and language technologyScience 2.0 and language technology
Science 2.0 and language technology
fridolin.wild805 views
Putting Data to Work: Moving science forward together beyond where we thought... by Erin Robinson
Putting Data to Work: Moving science forward together beyond where we thought...Putting Data to Work: Moving science forward together beyond where we thought...
Putting Data to Work: Moving science forward together beyond where we thought...
Erin Robinson32 views
Open Research Knowledge Graph (ORKG) - an overview by Jennifer D'Souza
Open Research Knowledge Graph (ORKG) - an overview   Open Research Knowledge Graph (ORKG) - an overview
Open Research Knowledge Graph (ORKG) - an overview
Jennifer D'Souza97 views
Benefits and practice of open science by Sarah Jones
Benefits and practice of open scienceBenefits and practice of open science
Benefits and practice of open science
Sarah Jones2.9K views
Collaborations in the Extreme: 
The rise of open code development in the scie... by Kelle Cruz
Collaborations in the Extreme: 
The rise of open code development in the scie...Collaborations in the Extreme: 
The rise of open code development in the scie...
Collaborations in the Extreme: 
The rise of open code development in the scie...
Kelle Cruz2.4K views
Open Source Geospatial and the OSGeo Foundation by gssg
Open Source Geospatial and  the OSGeo FoundationOpen Source Geospatial and  the OSGeo Foundation
Open Source Geospatial and the OSGeo Foundation
gssg483 views
Winning Horizon 2020 with Open Science by Martin Donnelly
Winning Horizon 2020 with Open ScienceWinning Horizon 2020 with Open Science
Winning Horizon 2020 with Open Science
Martin Donnelly817 views
Science20brussels osimo april2013 by osimod
Science20brussels osimo april2013Science20brussels osimo april2013
Science20brussels osimo april2013
osimod1.6K views

More from Chelle Gentemann

Butterfly Satellite Mission Overview by
Butterfly Satellite Mission OverviewButterfly Satellite Mission Overview
Butterfly Satellite Mission OverviewChelle Gentemann
121 views20 slides
Satellite passive microwave measurements of the climate crisis by
Satellite passive microwave measurements of the climate crisisSatellite passive microwave measurements of the climate crisis
Satellite passive microwave measurements of the climate crisisChelle Gentemann
127 views42 slides
FOSS4G 2021: Open source science by
FOSS4G 2021: Open source scienceFOSS4G 2021: Open source science
FOSS4G 2021: Open source scienceChelle Gentemann
121 views14 slides
Open ecosystems help science storm the cloud by
Open ecosystems help science storm the cloudOpen ecosystems help science storm the cloud
Open ecosystems help science storm the cloudChelle Gentemann
121 views20 slides
Empowering Transformational Science by
Empowering Transformational ScienceEmpowering Transformational Science
Empowering Transformational ScienceChelle Gentemann
28 views19 slides
Building a Community of Practice by
Building a Community of PracticeBuilding a Community of Practice
Building a Community of PracticeChelle Gentemann
20 views5 slides

More from Chelle Gentemann(9)

Butterfly Satellite Mission Overview by Chelle Gentemann
Butterfly Satellite Mission OverviewButterfly Satellite Mission Overview
Butterfly Satellite Mission Overview
Chelle Gentemann121 views
Satellite passive microwave measurements of the climate crisis by Chelle Gentemann
Satellite passive microwave measurements of the climate crisisSatellite passive microwave measurements of the climate crisis
Satellite passive microwave measurements of the climate crisis
Chelle Gentemann127 views
Open ecosystems help science storm the cloud by Chelle Gentemann
Open ecosystems help science storm the cloudOpen ecosystems help science storm the cloud
Open ecosystems help science storm the cloud
Chelle Gentemann121 views
Multi-sensor Improved Sea Surface Temperatures Project by Chelle Gentemann
Multi-sensor Improved Sea Surface Temperatures ProjectMulti-sensor Improved Sea Surface Temperatures Project
Multi-sensor Improved Sea Surface Temperatures Project
Chelle Gentemann206 views

Recently uploaded

selection of preformed arch wires during the alignment stage of preadjusted o... by
selection of preformed arch wires during the alignment stage of preadjusted o...selection of preformed arch wires during the alignment stage of preadjusted o...
selection of preformed arch wires during the alignment stage of preadjusted o...MaherFouda1
7 views100 slides
Oral_Presentation_by_Fatma (2).pdf by
Oral_Presentation_by_Fatma (2).pdfOral_Presentation_by_Fatma (2).pdf
Oral_Presentation_by_Fatma (2).pdffatmaalmrzqi
8 views7 slides
CYTOSKELETON STRUCTURE.ppt by
CYTOSKELETON STRUCTURE.pptCYTOSKELETON STRUCTURE.ppt
CYTOSKELETON STRUCTURE.pptEstherShobhaR
14 views19 slides
TF-FAIR.pdf by
TF-FAIR.pdfTF-FAIR.pdf
TF-FAIR.pdfDirk Roorda
6 views120 slides
2. Natural Sciences and Technology Author Siyavula.pdf by
2. Natural Sciences and Technology Author Siyavula.pdf2. Natural Sciences and Technology Author Siyavula.pdf
2. Natural Sciences and Technology Author Siyavula.pdfssuser821efa
12 views232 slides
Indian council for child welfare by
Indian council for child welfareIndian council for child welfare
Indian council for child welfareRenuWaghmare2
7 views21 slides

Recently uploaded(20)

selection of preformed arch wires during the alignment stage of preadjusted o... by MaherFouda1
selection of preformed arch wires during the alignment stage of preadjusted o...selection of preformed arch wires during the alignment stage of preadjusted o...
selection of preformed arch wires during the alignment stage of preadjusted o...
MaherFouda17 views
Oral_Presentation_by_Fatma (2).pdf by fatmaalmrzqi
Oral_Presentation_by_Fatma (2).pdfOral_Presentation_by_Fatma (2).pdf
Oral_Presentation_by_Fatma (2).pdf
fatmaalmrzqi8 views
2. Natural Sciences and Technology Author Siyavula.pdf by ssuser821efa
2. Natural Sciences and Technology Author Siyavula.pdf2. Natural Sciences and Technology Author Siyavula.pdf
2. Natural Sciences and Technology Author Siyavula.pdf
ssuser821efa12 views
Indian council for child welfare by RenuWaghmare2
Indian council for child welfareIndian council for child welfare
Indian council for child welfare
RenuWaghmare27 views
A Ready-to-Analyze High-Plex Spatial Signature Development Workflow for Cance... by InsideScientific
A Ready-to-Analyze High-Plex Spatial Signature Development Workflow for Cance...A Ready-to-Analyze High-Plex Spatial Signature Development Workflow for Cance...
A Ready-to-Analyze High-Plex Spatial Signature Development Workflow for Cance...
InsideScientific121 views
Exploring the nature and synchronicity of early cluster formation in the Larg... by Sérgio Sacani
Exploring the nature and synchronicity of early cluster formation in the Larg...Exploring the nature and synchronicity of early cluster formation in the Larg...
Exploring the nature and synchronicity of early cluster formation in the Larg...
Sérgio Sacani1.5K views
Discovery of therapeutic agents targeting PKLR for NAFLD using drug repositio... by Trustlife
Discovery of therapeutic agents targeting PKLR for NAFLD using drug repositio...Discovery of therapeutic agents targeting PKLR for NAFLD using drug repositio...
Discovery of therapeutic agents targeting PKLR for NAFLD using drug repositio...
Trustlife207 views
Experimental animal Guinea pigs.pptx by Mansee Arya
Experimental animal Guinea pigs.pptxExperimental animal Guinea pigs.pptx
Experimental animal Guinea pigs.pptx
Mansee Arya42 views
Factors affecting fluorescence and phosphorescence.pptx by SamarthGiri1
Factors affecting fluorescence and phosphorescence.pptxFactors affecting fluorescence and phosphorescence.pptx
Factors affecting fluorescence and phosphorescence.pptx
SamarthGiri18 views
Best Hybrid Event Platform.pptx by Harriet Davis
Best Hybrid Event Platform.pptxBest Hybrid Event Platform.pptx
Best Hybrid Event Platform.pptx
Harriet Davis10 views
Evaluation and Standardization of the Marketed Polyherbal drug Patanjali Divy... by Anmol Vishnu Gupta
Evaluation and Standardization of the Marketed Polyherbal drug Patanjali Divy...Evaluation and Standardization of the Marketed Polyherbal drug Patanjali Divy...
Evaluation and Standardization of the Marketed Polyherbal drug Patanjali Divy...
Small ruminant keepers’ knowledge, attitudes and practices towards peste des ... by ILRI
Small ruminant keepers’ knowledge, attitudes and practices towards peste des ...Small ruminant keepers’ knowledge, attitudes and practices towards peste des ...
Small ruminant keepers’ knowledge, attitudes and practices towards peste des ...
ILRI9 views
A giant thin stellar stream in the Coma Galaxy Cluster by Sérgio Sacani
A giant thin stellar stream in the Coma Galaxy ClusterA giant thin stellar stream in the Coma Galaxy Cluster
A giant thin stellar stream in the Coma Galaxy Cluster
Sérgio Sacani20 views

Open Science

  • 1. Towards open science: Accelerating and expanding NASA’s scientific impact Chelle Gentemann (she/her) @chellegentemann www.github.com/cgentemann
  • 2. What is open science? “a collaborative culture enabled by technology that empowers the open sharing of data, information, and knowledge within the scientific community and the wider public to accelerate scientific research and understanding.” Ramachandran, R., Bugbee, K., & Murphy, K. J. (Submitted 2020). Moving from Open Data to Open Science. Earth and Space Science, (Gold Access Journal)
  • 3. (1) increasing the accessibility to the scientific process and the corresponding body of knowledge; (2) making both the research process and knowledge sharing more efficient (3) understanding and assessing scientific impact through innovative new metrics. Designed to…. Ramachandran, R., Bugbee, K., & Murphy, K. J. (Submitted 2020). Moving from Open Data to Open Science. Earth and Space Science, (Gold Access Journal)
  • 4. Who gets to participate? In open science, power dynamics change & there is public documentation of all contributions Murphy, M. C., Mejia, A. F., Mejia, J., Yan, X., Cheryan, S., Dasgupta, N., et al. (2020). Open science, communal culture, and women’s participation in the movement to improve science. Proceedings of the National Academy of Sciences, 117(39), 24154–24164. https://doi.org/10.1073/pnas.1921320117
  • 5. Sometimes, science feel like a fortress. Using data downloaded to a local (closed) repository Not sharing software Running analysis on local cyberinfrastructure Publishing results in a pay-wall journal Project communications all private (email) Closed Research Image: national geographic
  • 6. Why is open science hard? fotoseek.com
  • 7. let go of everything you fear Credit: Star Wars
  • 8. Open Science ● Open data ● Permissively licensed software public on GitHub ● Open Cyberinfrastructure ● Open access article with containerized code ● Project communication on GitHub & Discourse ● Mentorship ● Code of conduct https://youtu.be/qwBvTT9h_Qs
  • 9. A spectrum of openness Image credit: Pink Floyd to accelerate NASA science
  • 10. Open Data ● DMP contents? ● Continue efforts to enable access & usability (FAIR / Cloud / DAACS) ● When is data made open? What level of data is made open? How is access enabled? Permissive License? ● PI leadership & communication https://urbantide.com/fullstory2/2017/6/28/beyond-open-data-the-rise-of-data-sharing
  • 11. EVS2 OMG! - that is some fast data New scientist not part of OMG
  • 12. Software 7-steps to openness- SMP contents? 1. Publicly visible source code (github) 2. Licensed for reuse 3. Accepting contributions 4. Open development 5. Open decision making 6. Multi-institution engagement 7. Retirement https://coiled.io/blog/stages-of-openness/
  • 14. Open Cyberinfrastructure - Science Data Platforms ● Support platform agnostic, open source infrastructure solutions ● Challenge use of proprietary/platform specific software Image credit: https://2i2c.org/
  • 15. A super computer behind every device
  • 17. Binder - interactive tutorials (containerized) http://gallery.pangeo.io/
  • 18. Open dissemination ● Publish peer-reviewed articles in open-access journals ● +provide link to software ● +provide binder-link to reproduce all results, figures, and tables ● Actively engage with the public by ○ Starting a science blog ○ Working on a citizen science project or supporting hack-a-thons ○ Sharing your results on social media: Twitter, Facebook, LinkedIn, YouTube ○ Be sure to cite data, software and documentation in journal articles
  • 19. A holistic metric of openness? “Not everything that can be counted counts, and not everything that counts can be counted” - William Bruce Cameron Altmetrics - capture the attention research receiving - part of the solution? We need a metric that captures openness of data, software, infrastructure, dissemination. https://www.cloverdx.com/hubfs/metrics.jpg
  • 20. Open by Design (1) Build an inclusive community of scientists advancing open science (2) Incentivize openness (3) Highlight early adopter activities to motivate broader community (4) Coordinate -- move forward together
  • 21. Proposals: Plan and budget for openness (1) What information does a DMP or SMP contain? Where is information about dissemination plans? Examples? (2) Useful metrics? (3) What criteria are included in the review process (what information should be provided by proposal?) https://image.freepik.com/free-vector/follow-leader-concept_1025-106.jpg
  • 22. Teams: Plan and budget for openness (1) Open communication (2) Open dissemination (3) Shared resources (4) Mentorship process (5) Safe spaces
  • 23. Open to accelerate science “Give sufficient credit for whatever one would like to see shared, and scientists will indeed start sharing it” Bright & Heesen http://sootyempiric.blogspot.com/2020/11/the-head-and-heart-incentives-and-norms.html