Slides from my talk at the NHM London as part of the Cisco Digital Catapult, 25-26 February 2016

1. @rdmpage
http://iphylo.blogspot.com

2. What is digitisation?
specimen
metadata
metadata

3. DNA barcodes
(digital code of life)
>COI Memphis moruus 1069855
AACTTTATATTTTATTTTTGGAATTTGAGCAGGAATATTAGGAACTTC
ATTAAGTCTTATTATCCGAACTGAACTTGGTAATCCAGGATTTTTAATT
GGAGATGATCAAATTTATAATACTATTGTTACAGCTCATGCATTTATTA
TAATTTTTTTTATAGTTATACCTATTATAATTGGAGGTTTCGGTAACTG
ATTAATTCCATTAATACTTGGAGCCCCCGATATAGCTTTCCCCCGCATA
AATAATATAAGATTTTGACTTCTCCCCCCCTCTTTAATTCTCTTAATTTC
AAGTAGAATTGTAGAAAATGGAGCAGGAACAGGATGAACAGTTTAC
CCCCCCCTATCATCAAATATTGCTCATGGAGGATCATCAGTTGATTTAG
CTATTTTTTCTTTACATTTAGCAGGAATTTCATCAATCTTAGGAGCTAT
TAATTTTATCACAACAATTATTAATATACGAGTAAATAATATATCTTATG
ATCAAATACCTTTATTTGTTTGATCTGTAGGTATTACTGCCTTACTTCTA
TTACTTTCTCTACCAGTTTTAGCTGGAGCTATTACTATATTATTAACTGA
CCGAAATTTAAATACTTCATTTTTTGACCCTGCTGGAGGAGGTGATCC
TATTCTTTATCAACATTTATTT
http://www.dnabarcode.net/20141105/qrpub/inspector/home

5. BHL page image (more detial in
litertaure)

6. ALL THE THINGS
DIGITISE

7. “Joined-up” digitisation
literature, specimens, sequences

8. Why digitise?

9. https://www.flickr.com/photos/nhm_beetle_id/15930177695

10. GBIF.org 500+ million records

11. http://devpost.com/software/gbif-soundscape
@peterneish Ben Raymond

12. http://devpost.com/software/gbif-data-and-3d-printing
Ben Raymond

13. Intellectual Property:
Ownership to ensure it is open
Collections CC 0 and CC-BY Literature CC-BY-SA-
NC or paywall
JSTOR Global plants
paywall

14. Linking

15. strings things

17. PMID:948206

18. http://biostor.org/reference/102054

20. http://data.gbif.org/occurrences/215921922/

21. BHL and GBIF as biomedical databases
http://iphylo.blogspot.co.uk/2012/03/bhl-and-gbif-as-biomedical-databases.html
PubMed
(disease)
BioStor
(publication)
GBIF
(specimen)

23. ORCID
(person)
DOI
(publication)
LSID
(plant name)
Find my papers that
published new species
@SandyKnapp

25. ORCID
(person)
DOI
(publication)
LSID
(plant name)
#Iamataxonomist

26. http://events.labs.crossref.org/events/types/WikipediaCitation

27. Reality check…
This exists
(sort of)
This, not so much

29. • Digitise all the things
• Link all the things
• Build knowledge graph