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Bio4j: A pioneer graph based database for the integration of biological Big Data

by Bioinformatics consultant/developer/researcher at Oh no sequences! (Era7 Bioinformatics) on Oct 27, 2011

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1. Bio4j ...

1. Bio4j
2. What’s Bio4j?: Data included
3. What’s Bio4j?: A completely new and powerful framework for protein
4. What’s Bio4j?: Neo4j --> very scalable
5. What's Bio4j?: Everything in Bio4j is open source released under AGPLv3
6. Bioinformatics DBs and Graphs: Highly interconnected overlapping knowledge spread throughout different databases
7. Bioinformatics DBs and Graphs: Data is in most cases modeled in relational databases, (sometimes even just as plain CSV files)
8. Bioinformatics DBs and Graphs: Problems of a relational paradigm
9. Bioinformatics DBs and Graphs: Life + Biology like a graph
10. Bioinformatics DBs and Graphs: NoSQL
11. Bioinformatics DBs and Graphs: NoSQLdata models
12. Bioinformatics DBs and Graphs: The Graph DB model: representation
13. Bioinformatics DBs and Graphs: Neo4j
14. Initial motivation: Why starting all this?
15. Initial motivation: Processes had to be automated for BG7 (http://bg7.ohnosequences.com)

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Bio4j: A pioneer graph based database for the integration of biological Big Data Bio4j: A pioneer graph based database for the integration of biological Big Data Presentation Transcript