BioSQL Reloaded: v1.0 Release, PhyloDB Module, and Future Features

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BioSQL Reloaded: v1.0 Release, PhyloDB Module, and Future Features

  1. 1. BioSQL Reloaded: v1.0 Release, PhyloDB Module, and Future Features Hilmar Lapp (NESCent), Richard Holland, Aaron Mackey, William Piel, Mark Schreiber BOSC 2008
  2. 2. What is BioSQL? Interoperable persistence layer for Bio* supporting • BioPerl • Biojava • Biopython • BioRuby
  3. 3. What is BioSQL? Generic extensible relational model • sequences • features • sequence and feature annotation • a reference taxonomy • ontologies, controlled vocabularies
  4. 4. What is BioSQL? Generic extensible relational model • sequences • features • sequence and feature annotation • a reference taxonomy • ontologies, controlled vocabularies • phylogenetic trees or networks

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