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ETOOL.ME
FOR BIOLOGISTS
1/ WHAT IS ETOOL.ME
2/ FEATURES FOR BIOLOGISTS
3/ THE IMPORTANT BIOINFORMATICS TOOLS

4/ TECHNICAL OVERVIEW
5/ REFERRER LINK
6-Nov-13

Pham Thai Hoa

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Link at http://etool.me
Develop by the young and motivated
computer scientists and bioinformaticians
Makes bioinformatics tools more
accessible
Brings the best bioinformatics tools to the
workbenches of biologists or even to their
cell phones
Makes the Etool platform usable for the
bioligists to develop their tools

WHAT IS ETOOL.ME
6-Nov-13

Pham Thai Hoa

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Channel - Sharing your research
experiences: both failure and success

FEATURES FOR BIOLOGIST
6-Nov-13

Pham Thai Hoa

3
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Quick support for the best bioinformatics
tools

FEATURES FOR BIOLOGIST
6-Nov-13

Pham Thai Hoa

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Latest news stories, reference
articles, images, and books in
bioinformatics

FEATURES FOR BIOLOGIST
6-Nov-13

Pham Thai Hoa

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Educational resources for students

FEATURES FOR BIOLOGIST
6-Nov-13

Pham Thai Hoa

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Publish important bioinformatics tools

FEATURES FOR BIOLOGIST
6-Nov-13

Pham Thai Hoa

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Sibelia is a tool for finding synteny blocks

THE IMPORTANT TOOLS
6-Nov-13

Pham Thai Hoa

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C-Sibelia is designed for comparison
between two genomes represented

THE IMPORTANT TOOLS
6-Nov-13

Pham Thai Hoa

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Breakage-fusion-bridge is a mechanism of
genomic instability

THE IMPORTANT TOOLS
6-Nov-13

Pham Thai Hoa

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SFselect is a method for classifying
genomic regions

THE IMPORTANT TOOLS
6-Nov-13

Pham Thai Hoa

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Front-end : Python, Javascript, HTML5
Back-end : C/C++, Python, Erlang
Database : PostgreSQL, Memcached and
Tokyo Tycoon
Searching : Apache Lucence
Framework : Twitter Boostrap, Facebook
Tornado, Boost C/C++
Algorithm : Stack, Queue, Tree, Bloom
Filter, LRU Caching, Sorting

TECHNICAL OVERVIEW
6-Nov-13

Pham Thai Hoa

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Push notification center : Websocket,
TCP/IP socket and HTTP
Scale : Cluster, Event Driven, NonBlocking, Message Passing Protocol
Tools : C/C++, Python, Perl, R-Lang
Bioinformatic : Suffix Array, Suffix String,
Graph, Tree
Serialization/RPC : Apache thrift, Google
Snappy
Parallel and Distributed Programming

TECHNICAL OVERVIEW
6-Nov-13

Pham Thai Hoa

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TECHNICAL OVERVIEW
6-Nov-13

Pham Thai Hoa

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http://arxiv.org/abs/1307.7941
http://arxiv.org/abs/1301.2610
http://bioinf.ucsd.edu/~rronen/sfselect.html
http://www.boost.org/
http://tools.ietf.org/html/rfc6455
http://www.tornadoweb.org/en/stable/
http://memcached.org/
http://www.postgresql.org/
http://en.wikipedia.org/wiki/Suffix_array
http://en.wikipedia.org/wiki/Bloom_filter
http://snpeff.sourceforge.net/

REFERRER LINK
6-Nov-13

Pham Thai Hoa

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6-Nov-13

Pham Thai Hoa

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6-Nov-13

Pham Thai Hoa

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Etool.Me Platform for Biologists