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ETOOL.ME
FOR BIOLOGISTS
1/ WHAT IS ETOOL.ME
2/ FEATURES FOR BIOLOGISTS
3/ THE IMPORTANT BIOINFORMATICS TOOLS

4/ TECHNICAL...
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Link at http://etool.me
Develop by the young and motivated
computer scientists and bioinformaticians
Makes bio...
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Channel - Sharing your research
experiences: both failure and success

FEATURES FOR BIOLOGIST
6-Nov-13

Pham Thai Hoa

...
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Quick support for the best bioinformatics
tools

FEATURES FOR BIOLOGIST
6-Nov-13

Pham Thai Hoa

4
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Latest news stories, reference
articles, images, and books in
bioinformatics

FEATURES FOR BIOLOGIST
6-Nov-13

Pham Tha...
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Educational resources for students

FEATURES FOR BIOLOGIST
6-Nov-13

Pham Thai Hoa

6
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Publish important bioinformatics tools

FEATURES FOR BIOLOGIST
6-Nov-13

Pham Thai Hoa

7


Sibelia is a tool for finding synteny blocks

THE IMPORTANT TOOLS
6-Nov-13

Pham Thai Hoa

8
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C-Sibelia is designed for comparison
between two genomes represented

THE IMPORTANT TOOLS
6-Nov-13

Pham Thai Hoa

9
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Breakage-fusion-bridge is a mechanism of
genomic instability

THE IMPORTANT TOOLS
6-Nov-13

Pham Thai Hoa

10
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SFselect is a method for classifying
genomic regions

THE IMPORTANT TOOLS
6-Nov-13

Pham Thai Hoa

11
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Front-end : Python, Javascript, HTML5
Back-end : C/C++, Python, Erlang
Database : PostgreSQL, Memcached and
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Push notification center : Websocket,
TCP/IP socket and HTTP
Scale : Cluster, Event Driven, NonBlocking, Mes...
TECHNICAL OVERVIEW
6-Nov-13

Pham Thai Hoa

14
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http://arxiv.org/abs/1307.7941
http://arxiv.org/abs/1301.2610
http://bioinf.ucsd.edu/~rronen/sfsele...
6-Nov-13

Pham Thai Hoa

16
6-Nov-13

Pham Thai Hoa

17
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Etool.Me Platform for Biologists

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Etool.Me makes bioinformatics tools more accessible.
Etool.Me brings the best bioinformatics tools to the workbenches of biologists or even to their cell phones.

Published in: Technology, Education
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Etool.Me Platform for Biologists

  1. 1. ETOOL.ME FOR BIOLOGISTS 1/ WHAT IS ETOOL.ME 2/ FEATURES FOR BIOLOGISTS 3/ THE IMPORTANT BIOINFORMATICS TOOLS 4/ TECHNICAL OVERVIEW 5/ REFERRER LINK 6-Nov-13 Pham Thai Hoa 1
  2. 2.      Link at http://etool.me Develop by the young and motivated computer scientists and bioinformaticians Makes bioinformatics tools more accessible Brings the best bioinformatics tools to the workbenches of biologists or even to their cell phones Makes the Etool platform usable for the bioligists to develop their tools WHAT IS ETOOL.ME 6-Nov-13 Pham Thai Hoa 2
  3. 3.  Channel - Sharing your research experiences: both failure and success FEATURES FOR BIOLOGIST 6-Nov-13 Pham Thai Hoa 3
  4. 4.  Quick support for the best bioinformatics tools FEATURES FOR BIOLOGIST 6-Nov-13 Pham Thai Hoa 4
  5. 5.  Latest news stories, reference articles, images, and books in bioinformatics FEATURES FOR BIOLOGIST 6-Nov-13 Pham Thai Hoa 5
  6. 6.  Educational resources for students FEATURES FOR BIOLOGIST 6-Nov-13 Pham Thai Hoa 6
  7. 7.  Publish important bioinformatics tools FEATURES FOR BIOLOGIST 6-Nov-13 Pham Thai Hoa 7
  8. 8.  Sibelia is a tool for finding synteny blocks THE IMPORTANT TOOLS 6-Nov-13 Pham Thai Hoa 8
  9. 9.  C-Sibelia is designed for comparison between two genomes represented THE IMPORTANT TOOLS 6-Nov-13 Pham Thai Hoa 9
  10. 10.  Breakage-fusion-bridge is a mechanism of genomic instability THE IMPORTANT TOOLS 6-Nov-13 Pham Thai Hoa 10
  11. 11.  SFselect is a method for classifying genomic regions THE IMPORTANT TOOLS 6-Nov-13 Pham Thai Hoa 11
  12. 12.       Front-end : Python, Javascript, HTML5 Back-end : C/C++, Python, Erlang Database : PostgreSQL, Memcached and Tokyo Tycoon Searching : Apache Lucence Framework : Twitter Boostrap, Facebook Tornado, Boost C/C++ Algorithm : Stack, Queue, Tree, Bloom Filter, LRU Caching, Sorting TECHNICAL OVERVIEW 6-Nov-13 Pham Thai Hoa 12
  13. 13.       Push notification center : Websocket, TCP/IP socket and HTTP Scale : Cluster, Event Driven, NonBlocking, Message Passing Protocol Tools : C/C++, Python, Perl, R-Lang Bioinformatic : Suffix Array, Suffix String, Graph, Tree Serialization/RPC : Apache thrift, Google Snappy Parallel and Distributed Programming TECHNICAL OVERVIEW 6-Nov-13 Pham Thai Hoa 13
  14. 14. TECHNICAL OVERVIEW 6-Nov-13 Pham Thai Hoa 14
  15. 15.            http://arxiv.org/abs/1307.7941 http://arxiv.org/abs/1301.2610 http://bioinf.ucsd.edu/~rronen/sfselect.html http://www.boost.org/ http://tools.ietf.org/html/rfc6455 http://www.tornadoweb.org/en/stable/ http://memcached.org/ http://www.postgresql.org/ http://en.wikipedia.org/wiki/Suffix_array http://en.wikipedia.org/wiki/Bloom_filter http://snpeff.sourceforge.net/ REFERRER LINK 6-Nov-13 Pham Thai Hoa 15
  16. 16. 6-Nov-13 Pham Thai Hoa 16
  17. 17. 6-Nov-13 Pham Thai Hoa 17

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