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Drug Metabolism & Pharmacokinetics
in Drug Discovery: A Primer for
Bioanalytical Chemists, Part I
Chandrani Gunaratna                                                                In the face of advancing technology in combinatorial synthesis and high
Bioanalytical Systems Inc.
2701 Kent Avenue                                                                   throughput screening, the drug discovery process continues to evolve.
West Lafayette, IN                                                                 Preclinical drug metabolism and pharmacokinetics studies play a key role
47906-1382
                                                                                   in lead identification and optimization. This fast-paced development
prema@bioanalytical.com                                                            process has imposed an enormous burden on the analytical chemist to
                                                                                   design faster and more sensitive assay techniques to aid the drug
                                                                                   discovery and development. This article, Part I of a two-part series
                                                                                   introduces the analytical chemist to the fundamentals of drug metabolism.
                                                                                   Part II of this series will discuss the pharmacokinetics aspects and how
                                                                                   drug metabolism data can be used to predict pharmacokinetic
                                                                                   parameters.


                             Technological innovation and the                      ciency in the optimization of desired   liphophilicity and stability are deter-
                             pressures of competition have                         pharmacological activity in humans      mined by measuring the octanol-
                             caused enormous changes in the                        while decreasing the reliance on ani-   water partition coefficient and pKa.
                             drug discovery process. Progress in                   mal studies has become a challenge.     These measurements are useful in
                             molecular biology and the Human                       New chemical entities (NCEs) enter      predicting the protein binding, tissue
                             Genome Project has contributed to                     the drug discovery pipeline through     distribution and absorption in the
                             the remarkable advances made in                       combinatorial synthesis and rational    gastrointestinal tract (1).
                             identification of new therapeutic tar-                drug design where information               The selected leads are further
                             gets. The drug discovery process is                   about the target of action is used to   screened using in vitro tests during
                             rapidly evolving due to the techno-                   design the lead compound. HTS           lead optimization. The goal of lead
                             logical developments in target iden-                  helps the identification of the leads   optimization is to select compounds
                             tification along with automation of                   that provide the required effect at     with required biological activity in
                             combinatorial synthesis and high                      high concentrations. In the secon-      humans. Relevant pharmacokinetic
                             throughput screening (HTS). In light                  dary screening stage physicochemi-      parameters such as tissue penetra-
                             of these advances, improving effi-                    cal properties such as solubility,      tion, stability, intestinal absorption,
F1                                                                                                                         metabolism, and elimination are ob-
                                                         CHEMICAL                    COMBINATORIAL                         tained using in vitro systems. These
Drug development
process (IND:                                                                                                              in vitro systems include mi-
Investigational New
                                                                            DISCOVERY                                      crosomes, hepatocytes or tissue
                                       Le




Drug, NDA: New Drug
                                        ad




Application)                                                                                                               slices for metabolite identification
                                            Ide




                                                              HIGH THROUGHPUT SCREENING
                                             nti




                                                                                                                           and evaluation of metabolic path-
                                                 fic
                                       Le




                                                                                                               al




                                                              PHYSIOCHEMICAL PROPERTIES
                                                   ati




                                                                                                                           ways and rates, and caco-2 cell lines
                                                                                                           in ic
                                        ad


                                                    on




                                                                                                          -c l
                                            Op




                                                                         IN VITRO SCREENS                                  for evaluating transcellular absorp-
                                                                                                                    ies
                                                                                                         Pre
                                             tim




                                                                                                                 tu d
                                                 iza




                                                                         IN VIVO SCREENS                                   tion. Cytotoxicity data can be ob-
                                                                                                               nS
                                                   tio
                                                    n




                                                                                                          ctio




                                                         File IND
                                                                             PHASE I
                                                                                                                           tained by using organ-specific cell
                                                                                                         era




                                                                                                                           lines. Knowledge of the toxic poten-
                                                                                                     Int
                                                                                               al
                                                                                              nic




                                                                             PHASE II
                                                                                                    ug




                                                                                                                           tial of these early leads and their
                                                                                                    Dr
                                                                                             Cli




                                                              File NDA
                                                                             PHASE III                                     possible metabolites is essential for
                                                                                                                           successful drug discovery. Most
                                                                          REGISTRATION                                     drug candidates fail at this stage and
                                                                                                                           only a few will be judged sufficiently
                                                                             MARKET                                        safe and efficacious to proceed fur-
                                                                                                                           ther into development. Both in vitro

17                                                                                                                                   Current Separations 19:1 (2000)
F2                                                                                                                            drug as schematically shown in F3 is
                                                      Oral                           Intestines
Absorption of a drug after                                                                                                    known as ADME studies.
administration.
                                                         Topical                        Skin
                                                                                                                              Drug Metabolism
                                             DRUG                         IV                                 BLOOD
                                                                                                                              Interest in drug or xenobiotic (for-
                                                        IM, SC, IP             Membranes                                      eign compounds) metabolism can be
                                                                                                                              dated back to the early 19th century.
                                                      Inhalation                               Lung                           Metabolism then was known as a
                                                                                                                              “detoxication” mechanism in the
F3                                                                                                                            body. In late 1930s, with the discov-
Schematic representation                                                                      m              Metabolites
                                                                                                                              ery of the synthetic azo-dye Pron-
                                                                                         bolis
of drug’s path from blood.                 Drug at                                   meta                                     tosil’s metabolism to antibacterial
                                                     absorption      Drug in
                                          Absorption                                                                          agent sulfanilamide in the body,
                                             Site                    Blood
                                                                                       eli m                                  studying metabolism has become an
                                                                                               ina             Urine
                                                                                                     ti on                    important priority. This year BAS
                                                                   distribution
                                                                                                                              and the International Society for the
                                                      Other                                                    Other          Study of Xenobiotics (ISSX) pro-
                                                   Distribution                   Tissues                    Excretory
                                                      Fluids                                                  Fluids          duced a historical calendar celebrat-
                                                                                                                              in g many o f the o riginal
                             and in vivo studies are then carried                 drug metabolism and pharmacoki-             contributions to our knowledge of
                             out on the active candidate com-                     netics aspects in drug discovery. Part      the metabolism of organic com-
                             pounds. The objective in these pre-                  1 of the article covers the basics of       pounds (3).
                             clinical studies is not only to identify             drug metabolism. In Part II we will             Metabolism is the mechanism of
                             the most active leads with the most                  discuss the kinetics of drug metabo-        elimination of foreign and undesir-
                             appropriate safety profiles but also,                lism and the relationship of kinetic        able compounds from the body and
                             to select the closest animal species to              data to the pharmacokinetics of a           the control of levels of desirable
                             the human for toxicity studies (2).                  drug.                                       compounds such as vitamins in the
                             Understanding of pharmacokinetic                                                                 body. Since information on the me-
                             and metabolism characteristics of                    Path of a drug                              tabolism of a drug plays a significant
                             the selected compounds is needed in                                                              role in selection and further charac-
                             designing appropriate human clini-                   After administration by any route, a        terization of the drug, an in-depth
                             cal trials. Various stages of drug dis-              drug will reach the blood stream as         look at the mechanism of drug meta-
                             covery are illustrated in F1.                        schematically shown in F2. This             bolism is worth the effort.
                                  Meeting the objectives of drug                  process is known as absorption. The             The major site of metabolism in
                             metabolism research, whether it be                   drug in the blood distributes rapidly       the body is the liver. Metabolism in
                             in vitro or in vivo, requires the proc-              between the plasma and blood cells          liver occurs in two stages: Phase I
                             essing of a very large number of                     and also between plasma proteins.           pathways in liver microsomes where
                             samples for the determination of                     Most drugs readily cross the capillar-      the drug is functionalized and Phase
                             drug candidates and metabolites.                     ies and reach the extracellular fluid       II pathways in liver cells where the
                             There is likewise a lot of structural                of every organ. Lipid soluble drugs         parent or the metabolite from Phase
                             chemistry to be done to identify me-                 cross the cell membranes and distrib-       I gets conjugated. Liver microsomes
                             tabolites. It is important for analyti-              ute into the intracellular fluid of vari-   are in the endoplasmic reticulum of
                             cal chemists to understand that the                  o us tissues. This process of               liver cells or hepatocytes. Phase I
                             vast majority of compounds (actu-                    transferring a drug from blood to           reactions in microsomes are cata-
                             ally > 99.99%) will never become                     various tissues is called distribution.     lyzed by a group of enzymes known
                             drugs. Thus the bioanalytical work                       A drug is eliminated either di-         as the cytochrome P450 system that
                             must be fast. Often elegance must be                 rectly through an excretory route           plays a significant role in drug meta-
                             traded for speed early in the process.               such as urine, bile etc. which is           bolism. The common chemical reac-
                             Later on, for example in clinical tri-               known as elimination; or indirectly         tions involved in Phase I are aromatic
                             als, the number of samples for a par-                through enzymatic or biochemical            hydroxylation, aliphatic hydroxyla-
                             ticular compound will increase                       transformation by the liver. The lat-       tion, oxidative N-dealkylation, oxi-
                             exponentially and carefully vali-                    ter path of elimination is called me-       dative O-dealkylation, S-oxidation,
                             dated methods are both required and                  tabolism. The study of this whole           reduction and hydrolysis. Most often
                             justified.                                           process of absorption, distribution,        this simple functionalization could
                                  This article is intended to en-                 metabolism and elimination of a             be sufficient to make a drug more
                             lighten bioanalytical chemists on                                                                soluble, facilitating elimination


www.currentseparations.com                                                                                                                                    18
T1                                                                                                       toxic and carcinogenic action of
                         Enzyme                        Substrates
Known Cytochrome                                                                                         xenobiotics.
P450 substrates.
                        CYP1A2      Amitriptyline, Betaxolol, Caffeine, Clomipramine, Clozapine,             There are about 30 human cyto-
                                    Chlorpromazine, Fluvoxamine, Haloperidol, Imipramine,                chrome P450 enzymes, out of which
                                    Olanzapine, Ondansetron, Propranolol, Tacrine, Theophylline,
                                                                                                         o nly six, CYP1A2, CYP2C9,
                                    Verapamil, (R)-Warfarin
                                                                                                         CYP2C19, CYP2D6, CYP2E1 and
                        CYP2A6       Coumarin, Betadiene, Nicotine                                       CYP3A4 are the major metabolizing
                                                                                                         enzymes. CYP3A is the most abun-
                        CYP2C9       Amitriptyline, Diclofenac, Demadex, Fluoxetine, Ibuprofen,
                                     Losartan, Naproxen, Phenytoin, Piroxicam, Tolbutamide,              dant and most clinically important
                                     (S)-Warfarin                                                        isozyme in humans. It metabolizes
                                                                                                         nearly 50% of the clinically available
                        CYP2C19      Amitriptyline, Citalopram, Clomipramine, Diazepam,
                                     Imipramine, Omeprazole                                              drugs. T1 shows the major CYPs
                                                                                                         involved in the metabolism of some
                        CYP2D6      Amitriptyline, Betaxolol, Clomipramine, Codeine, Clozapine,          known drugs. From the table it can
                                    Desipramine, Fluoxetine, Haloperidol, Imipramine, Methadone,
                                    Metoclopramide, Metoprolol, Nortriptyline, Olanzapine,               be seen that some drugs are metabo-
                                    Ondansetron, Paroxetine, Propranolol, Risperidone, Sertraline,       lized by more than one isozyme. This
                                    Timolol, Venlafaxine                                                 multiple-substrate metabolism is the
                        CYP2E1      Acetaminophen, Caffeine, Chlorzoxazone, Dextromethorphan,            cause for metabolism-based drug-
                                    Ethanol, Theophylline, Venlafaxine                                   drug interactions (DDIs).
                                                                                                             Some drugs can be inducers or
                        CYP3A4/5    Alprazolam, Amiodaron, Amitriptyline, Astemizole, Bupropion,
                                    Buspirone, Caffeine, Carbamazepine, Cerivastatin, Cisapride,         inhibitors of specific isozymes but
                                    Clarithromycin, Clomipramine, Codeine, Cyclosporine,                 not necessarily substrates. Enzyme
                                    Dexamethasone, Dextromethorphan, DHEA, Diazepam,                     inducers increase specific enzyme
                                    Diltiazem, Donepezil, Doxycycline, Erythromycin, Estradiol,
                                    Felodipine, Fluoxetine, Imipramine, Lansoprazole, Lidocaine,         levels by modulating the gene ex-
                                    Loratadine, Lovastatin, Midazolam, Nicardipine, Nifedipine,          pression. Some drugs induce P450
                                    Omeprazole, Orphenadrine, Paroxetine, Progesterone,                  enzymes that are not involved in their
                                    Quinidine, Rifampin, Sertraline, Sibutramine, Sildenafil,
                                    Simvastatin, Tacrolimus, Tamoxifen, Terfenadine,                     metabolism. For example, omepra-
                                    Testosterone, Theophylline, Verapami, Vinblastine, (R)-Warfarin      zole induces human CYP1A2 but is
                                                                                                         metabolized by CYP2C19 and
                   through the kidneys. Further conju-         Genetic polymorphism                      CYP3A4 (6). Administration of
                   gation in Phase II occurs by glu-                                                     omeprazole can lower the effect of a
                   curonidation, sulfation, amino acid         Cytochrome P450 enzymes are               drug normally metabolized by
                   conjugation, acetylation, methyla-          grouped into families and sub fami-       CYP1A2, e.g., acetaminophen.
                   tion or glutathione conjugation to          lies based on their structural similar-       Enzyme inhibitors function in
                   facilitate elimination.                     ity (5). Families include CYPs with       different ways. The competitive in-
                                                               >40% amino acid sequence homol-           hibitors compete with the substrate
                   Cytochrome P 450 system                     ogy and are designated by a number        for the active site, e.g., fluvoxamine
                                                               after CYP. Subfamilies are the CYPs       and caffeine for CYP1A2 (7). The
                   Cytochrome P450 (CYP) enzyme                within a family that have >60%            non-competitive inhibitors bind to
                   system, a very large group of en-           amino acid sequence homology and          the enzyme-substrate complex or to
                   zymes encoded by the P450 gene              are designated by a letter following      the heme group, e.g., ketoconazole.
                   superfamily, is one of the widely           the number. For example CYP3A4 is         The third type, irreversible inhibi-
                   studied topics in drug development.         a cytochrome P450 enzyme, belong-         tors inactivate the enzyme either by
                   CYPs are membrane bound proteins            ing to family 3 and subfamily A. The      heme binding or protein binding. En-
                   with an approximate molecular               last number 4, refers to the sequence     zyme inhibition can lead to higher
                   weight of 50 kD, and contain a heme         of discovery.                             systemic levels of a drug causing
                   moiety. CYPs and other mixed func-               Several of the drug metabolizing     enhanced efficacy or toxicity. This
                   tion oxygenases are mainly found in         enzymes, for example the CYP2             should be considered when multiple
                   the endoplasmic reticulum of the            family, are polymorphic (having           drugs are simultaneously prescribed
                   liver. The monooxygenase function           more than one variant of the gene).       and/or when over-the-counter drugs
                   of CYP450 involves a number of              Although the CYP isozymes gener-          or neutraceuticals are concomitantly
                   steps but the end reaction is the trans-    ally have similar functional proper-      administered with prescription
                   fer of one oxygen atom to the sub-          ties, each one is different and has a     drugs.
                   strate (R) that has a site for oxidation    distinct role. This polymorphism              When several enzymes metabo-
                   as shown below (4).                         forms a basis for interindividual dif-    lize a drug, e.g. propranolol (8), ad-
                                                               ferences in the efficacy of drug treat-   ministration of an enzyme inhibitor
                     NADPH + H+ + O2 + R-H CYP450
                         NADP+ + H2O + R-OH
                                                               ment, side effects of drugs and the       will not have a great effect since the


19                                                                                                                 Current Separations 19:1 (2000)
T2                                                                                                               Ultra extensive metabolism can
Known inhibitors             Enzyme                Inducers                         Inhibitors               cause therapeutic failure due to re-
and inducers of
CYP isozymes
                                                                                                             duced bioavailability or lack of acti-
                             CYP1A2     Cigarette Smoke, Phenobarbital,        Enoxacin, Ciprofloxacin,
                                        Ritonavir, Carbamazepine,              Grepafloxacin,                vation of the drug whereas poor
                                        Charbroiled Foods, Vegetables,         Fluvoxamine, Fluoxetine,      metabolism can lead to drug toxicity
                                        Omeprazole                             Nefazodone                    and sometimes death. For optimal
                             CYP2A6     Barbiturates                                                         drug therapy, the prescribing physi-
                                                                                                             cian should have the knowledge of
                             CYP2C9     Rifampin, Carbamazepine,               Amiodarone, Fluvastatin,      the genetic makeup of the CYP en-
                                        Ethanol, Phenytoin                     Fluvoxamine, Fluoxetine,
                                                                               Fluconazole, Miconazole,      zymes in the patient.
                                                                               Metronidazole, Ritonavir,
                                                                               Sulfamethoxazole              Outcome of drug metabolism
                             CYP2C19    Rifampin                               Fluvoxamine, Fluoxetine,
                                                                               Ticlopidine, Ritonavir        Various possibilities of the outcome
                                                                                                             of drug metabolism are illustrated in
                             CYP2D6     Pregnancy                              Quinidine, Fluoxetine,
                                                                                                             F4.
                                                                               Paroxetine, Sertraline,            Cytochrome P450 reactions
                                                                               Thioridazine, Cimetidine,     make substrates more hydrophilic
                                                                               Diphenhydramine,
                                                                                                             for easy elimination through the kid-
                                                                               Haloperidol, Ticlopidine
                                                                               (Ticlid), Ritonavir           neys. Although most often this re-
                                                                                                             sults in inactivation of the drug,
                             CYP2E1     Ethanol, Isoniazid, Ritonavir          Cimetidine, Watercress        some compounds form active meta-
                             CYP3A4/5   Carbamazepine, Dexamethasone,     Ketoconazole, Itraconazole,        bolites. These active metabolites can
                                        Rifapentine, Prednisone, Growth   Erythromycin, Grapefruit           enhance, modify, or inhibit the desir-
                                        Hormone, Rifampin, Phenobarbital, Juice, Fluvoxamine,                able activity of the drug. Sometimes
                                        Phenytoin,Troglitazone            Fluoxetine, Diltiazem,
                                                                          Verapamil, Clarithromycin,         the active metabolite initiates the
                                                                          Omeprazole), Ritonavir,            pharmacological activity. This func-
                                                                          Indinavir                          tion is used in designing pro drugs.
                                                                                                             Pro drugs are defined as therapeutic
                                                                                                             agents that are inactive but are trans-
F4                                                                                                           formed into the active form by enzy-
                                                                                     Toxicity
                                                         Toxic Metabolite
End results of drug                                                                                          matic reactions. This is very useful
metabolism                                                                           Altered
                                                                                     Activity                when the active form is unstable or
                                                         Active Metabolite                                   poorly water soluble, making the
                                                                                    Enhanced
                                        DRUG                                         Activity                formulation a challenge. Following
                                                        Inactive Metabolite          Loss of                 oral administration, the hypotensive
                                                                                     Activity                drug Enalapril maleate (Vasotec) un-
                                                       Reversible Metabolite        Prolonged                dergoes ethyl ester hydrolysis to
                                                                                     Activity
                                                                                                             form enalaprilate, which is the active
                       drug has an alternate pathway. T2             tered to different individuals. Ge-     drug.
                       shows some inducers and inhibitors            netic polymorphism of CYP450 en-              Some drugs have very little
                       of the CYP isozymes.                          zymes characterize the general          therapeutic potential but form a more
                            There is a wide variation in the         population into three groups:           pharmacologically active metabo-
                       expression, activity and concentra-                                                   lite. For example codeine itself has
                       tions of different isozymes among                 a) Extensive metabolizers (EM):     very low analgesic activity. It forms
                       individuals, species and ethnic               normal population.                      morphine, the more active form
                       groups. The expression or the activ-              b) Poor metabolizers (PM): Indi-    when it is metabolized by CYP2D6.
                       ity of these enzymes is influenced by         viduals who inherit two inactive al-    Poor metabolizers of CYP2D6 or pa-
                       factors such as species specificity,          leles (alternative forms of the gene)   tients who are taking CYP2D6 in-
                       genetic polymorphism, gender- hor-            showing complete absence of en-         hibitors, therefore, do not experience
                       monal control, age, disease and envi-         zyme activity.                          the analgesic property of codeine.
                       ronmental inducers (caffeine,                     c) Ultra extensive metabolizers          In some cases the metabolite ex-
                       cigarette smoke). The variability as-         (UEM): Individuals with one com-        hibits the same pharmacological ac-
                       sociated with the CYP450 enzymes              mon allele and one amplified allele     tivity as the parent and is less toxic
                       in each individual results in marked          showing enhanced enzyme expres-         than the parent. One such example is
                       differences in response when the              sion.                                   the antihistamine drug fexofenadine
                       same drug and the dose is adminis-                                                    (Allegra) which is a metabolite of


www.currentseparations.com                                                                                                                    20
terfenedine (Seldane). Seldane was       trials later. Age, hormonal control       traceuticals and herbal medicines
     withdrawn from the market due to its     (gender, pregnancy), genetic poly-        like St. John’s Wort, Gingko Biloba,
     fatal interactions with erythromycin     morphism, disease state, are all inter-   the possibility increases consider-
     and ketoconazole in some patients        nal facto rs that affect the              ably for drug interactions to occur.
     when concomitantly administered.         metabolism. Infants for example,
          While there are many examples       lack Phase II enzymes whereas eld-        Influence of Drug Metabolism
     where both parent and the metabolite     erly patients have diminished meta-       on Drug Development
     have the same pharmacological ac-        bolism and excretion due to the
     tivity, some metabolites will show       aging process. Although there is no       In drug development it is important
     different pharmacological activity       evidence of clinically relevant gen-      to have information on the enzymes
     from the parent. This may lead to the    der differences in metabolism of hu-      responsible for the metabolism of a
     discovery of a new drug. Loxapine is     mans, there have been studies             drug candidate as early as possible in
     an antipsychotic drug that undergoes     showing the effect of rat sex hor-        the design phase. Knowledge of the
     extensive metabolism. The N-de-          mones on bioavailability. Liver dis-      metabolic pathways, metabolite sta-
     methylated metabolite, amoxapine         eases such as hepatitis, liver cancer,    bility, toxicity and the specific
     however has anti depressant activity     or cirrhosis impair drug metabolism       isozymes involved in the metabolism
     and is prescribed for that indication.   either due to the decreased number        are all important information in the
          Metabolism can also result in       of functional hepatocytes or to the       drug development process and in
     toxic metabolites. Formation of re-      altered NADPH/NAD ratio in the            planning human clinical studies. The
     active metabolic intermediates is one    liver. If the drug is cleared only by     rate of metabolism affects the oral
     of the causes for drug toxicity. Oxi-    the liver the impaired metabolism         bioavailability and clearance in hu-
     dation to electrophilic intermediates    can result in drug overdose.              mans and preclinical species. As dis-
     or reduction to nucleophilic radicals         Genetic or hereditary factors are    cu ssed b efo re, polymorphic
     that can attack DNA or RNA and           the most significant factor in drug       enzymes will lead to high interindi-
     induce carcinogenicity are two ma-       metabolism (10). Genetic differ-          vidual variability and potential for
     jor reactions by which toxicity is ex-   ences among individuals or ethnic         DDIs. Genetic information is used to
     erted. Although many leads are           groups can lead to an excessive or        predict the response of individual pa-
     abandoned early on in drug discov-       prolonged therapeutic effect or toxic     tients and patient populations to
     ery stage due to the toxic metabolite    overdose. For example, the enzyme         drugs and to tailor drug selection and
     formation, presence of a toxic meta-     CYP2D6 which metabolizes a large          dosage to fit the individual’s genetic
     bolite does not always implies toxic-    number of drugs has 16 alleles. The       constitution. Metabolite profiles are
     ity in a given drug candidate since      activity of this enzyme varies widely     important for designing prodrugs
     there are other factors that can make    among ethnic groups (11). About 1%        and pharmacologically active meta-
     the metabolite toxic or non-toxic.       of Arabics, 30% Chinese and 7-10%         bolites and for selecting the right
     Presence of a toxic metabolite how-      Caucasians are poor metabolizers of       animal species for toxicology stud-
     ever raises a red flag, which must be    CYP2D6 drugs. Another example is          ies. Structural modification of the
     extensively examined in animal tox-      CYP2C19, which contributes to the         drug candidate can alter the metabo-
     icity studies.                           metabolism of anxiolytics (e.g. di-       lism. Highly hydrophilic or highly
          Some drugs are metabolized re-      azepam). About 14-22% Asians and          lipophilic compounds are not suit-
     versibly. For example, sulindac, a       3-6% Caucasians are poor metabo-          able because they result in poor
     nonsteroidal anti-inflammatory drug      lizers of CYP2C19. Elevated plasma        bioavailability and very slow or very
     is reversibly metabolized to sulindac    drug levels in these populations after    fast excretion rates. In these in-
     sulphide which has anti-inflamma-        drug administration can increase the      stances replacing an active group
     tory and analgesic properties and is     sedative effect of the drug.              with another non-reactive group in
     irreversibly metabolized to sulindac          Environmental factors such as        the compound can achieve greater
     sulphone which has been suggested        diet, smoking, alcohol consumption        metabolic stability. For example, re-
     to possess antiproliferative effects     and concomitant drug therapy also         placing a methyl group by a t-butyl
     against tumors (9).                      influence the outcome of drug meta-       group can prevent demethylation.
                                              bolism. Cigarette smoke produces          Similarly, oxidation of aromatic
     Factors Affecting Drug                   poly aromatic hydrocarbons (PAH)          rings can be prevented by substitut-
     Metabolism                               which in duce CYP1A2 (12).                ing them with stronger electron with-
                                              CYP1A2 metabolizes the PAHs to            d rawing groups (e.g. CF3).
     There are marked differences in drug     carcinogens responsible for lung and      Information obtained from pre-clini-
     metabolism across species. Select-       colon cancer. Grapefruit juice is a       cal drug metabolism studies can be
     ing a species that closely represents    good example of dietary constituent       fed back to the design team to intro-
     the human is very crucial in drug        that inhibits CYP3A4 (13). With the       duce functional groups which will
     discovery and in designing clinical      new boom in consumption of neu-           alter the physical properties to make


21                                                                                                Current Separations 19:1 (2000)
T3                                                                  tify the metabolites and the sites at     Microsomal incubations are most
Information that can be          In vitro studies can               which metabolism occur. A variety         often used to obtain information on
obtained from in vitro           give information on:               of hepatic in vitro systems differing     Phase I reactions. One disadvantage
studies.
                             • Metabolite stability
                                                                    in biological intricacy are now com-      is that the information is not com-
                             • Metabolite profile                   mercially available for metabolism        plete as from the cellular systems.
                             • Metabolite identification            studies. Most widely used systems
                             • Interspecies comparisons             are discussed below in detail.            Isolated Hepatocytes
                             • Toxicology species selection
                             • CYP induction/inhibition                                                       Cell cultures or cell suspensions can
                                                                    Expressed Enzymes
                             • Drug/Drug interaction studies
                             • CYP isoform identification
                                                                                                              be used to study multiple aspects of
                             • Phase II enzyme studies              Advances in molecular biology have        drug metabolism, drug transport
                                                                    enabled the identification and char-      across cell membranes, cytotoxicity
                          the compounds more metabolically          acterization of a large number of in-     and enzyme induction in an environ-
                          stable. Thus final selection of a suc-    dividual CYP genes. Specific cDNA         ment where enzymes and co-factors
                          cessful drug lead depends im-             sequences for particular CYP              are present in normal physiological
                          mensely on the drug metabolism            isozymes have been cloned and ex-         concentrations and cellular integrity
                          studies.                                  pressed heterologously. These ex-         is maintained. Hepatocytes are used
                                                                    pressed enzymes including human           to study both Phase I and Phase II
                          Pre-clinical Drug                         enzymes are now commercially              reactions. Cells can be either primary
                          Metabolism Studies                        available as pure systems. Since the      or permanent cell cultures. Primary
                                                                    conditions of reactions such as con-      cell lines are most often used for drug
                          It is important to know how the drug      centrations of enzyme, substrate and      metabolism studies because perma-
                          is eliminated early in the drug devel-    co-factor can be carefully controlled,    nent cell lines possess very little or
                          opment process. If elimination is         enzyme systems have become a              no enzyme activity. Primary cells are
                          mainly by metabolism, then the me-        powerful tool to study drug metabo-       isolated from fresh liver tissue and
                          tabolic pathways and products need        lism. This system is very useful in the   can be used immediately after isola-
                          to be understood. Knowing the tox-        study of kinetics, specificity and the    tion or culture for long-term studies.
                          icity of a drug and its metabolites       mechanism of the enzyme reaction.         However, cultured or cryopreserved
                          before entering human clinical trials     However, folding or the posttransla-      cells lose the P450 activity rapidly
                          is essential to avoid failures later on   tional modifications and enzyme ac-       with time (14). Also, hepatocytes
                          in the process. Both in vitro and ani-    tivity of the expressed enzyme may        cannot be frozen and thawed or be
                          mal in vivo studies are done in the       differ from the native enzyme.            prepared from previously frozen
                          pre-clinical stage.                                                                 liver. Therefore, there is a great need
                               Most promising compounds are         Microsomes                                for research in improving cryopre-
                          selected from in vitro studies and                                                  servation technology and stabiliza-
                          their pharmacokinetic parameters          Microsomes can be prepared easily         tion of P450 activity in primary
                          are obtained in two animal species,       from frozen liver tissues. They con-      cultures. With the increased avail-
                          commonly in rat and dog in the in         tain most of the oxidative drug me-       ability of fresh human tissues from
                          vivo animal studies. This article will    tabolizing enzymes. Their easy            various commercial and non-profit
                          focus on the in vitro studies and in-     preparation and good long-term sta-       institutions, human hepatocytes
                          formation obtained from them.             bility at -80 °C make microsomes the      have become the most widely used
                                                                    most frequently used in vitro system      and preferred in vitro system.
                          In Vitro Studies                          in drug metabolism studies. Mi-
                                                                    crosomes are isolated from liver cells    Tissue Slices
                          The in vitro studies during pre-clini-    by disrupting the cellular contents
                          cal screening are low-throughput          and centrifugation at 100,000 ✕ g.        While tissue slices have been used
                          systems. Primary in vitro metabolic       Liver microsomes can be manipu-           from other organs like brain, heart,
                          systems used in drug metabolism in-       lated by induction and inhibition to      and kidney, liver is the most com-
                          volve hepatic enzymes or tissue           vary the activity or the levels of the    monly used tissue type for drug me-
                          preparations. Information (T3) ob-        isozymes. The ability to phenotype        tabolism experiments. Tissue slices
                          tained by incubating a test drug with     microsomes greatly increases the          have certain advantages over other
                          these systems can be used as feed-        utility of this system in the identifi-   systems. With intact cell-cell junc-
                          back to design safer and more meta-       cation of specific isozymes responsi-     tions, normal hepatic cellular archi-
                          bolically stable drugs. Compounds         ble. Metabolic information such as        tecture is retained in the tissue. Since
                          can be ranked according to the meta-      metabolic profiles, stability, metabo-    they contain the complete comple-
                          bolic stabilities. Mass spectrometry      lite identification and kinetics can be   ment of drug metabolizing enzymes
                          is used as a qualitative tool to iden-    obtained from microsomal systems.         with all the cofactors present in rele-


www.currentseparations.com                                                                                                                      22
T4                                                                                                             6. H. Shih, G. V. Pickwell, D. K.
                                                                                                                  Guenette, B. Bilir, L. C. Quattrochi,
Comparison of             System             Advantages         Disadvantages            Future Needs             Hum. Exp. Toxicol . 18 (1999)
in vitro systems.
                                                                                                                  95-105
                      Expressed           Pure system          Single system          Integration with other
                                                                                                               7. O. V. Olesen, K. Linnet, J Clin
                      Enzymes                                                         enzyme systems
                                                                                                                  Psychopharmacol 20 (2000) 35-42.
                      Microsomes          Well-used, Long      Limited information,                            8. Y. Masubuchi, S. Hosokawa, T.
                                          term storage at      Need cofactors                                     Horie, T. Suzuki, S. Ohmori, M.
                                          -80°C,Well-                                                             Kitada, and S. Narimatsu, Drug
                                          characterized                                                           Metab. Disposition, 22 (1994)
                                                                                                                  909-915.
                      Isolated cells     Integrated cellular   Short life time,       Increased availability   9. N. M. Davies, M. S. Watson Clin.
                      (e.g. Hepatocytes) system                Limited enzyme         of human cells,             Pharmacokinet. 32 (1997) 437-459
                                                               stability              Better preservation
                                                                                                               10. J. van der Weide, L. S. Steijns Ann
                      Slices              Easy to prepare,     Limited medium         Greater availability        Clin Biochem 36 (1999) 722-729.
                                          Cellular integrity   penetration,           of human tissues,        11. H. K. Kroemer, M. Eichelbaum Life
                                          maintained           Short-term viability   Cryopreservation            Sciences, 26 (1995) 2285-2298.
                                                                                                               12. S. Zevin, N. L. Benowitz Clin
                                                                                                                  Pharmacokinet 36 (1999) 425-438.
                    vant concentrations, complete infor-         FDA guidelines suggest first using in         13. D. G. Bailey, J. Malcolm, O. Arnold,
                    mation on the metabolism reactions           vitro studies to assess the effect of            J. D. Spence Br J Clin Pharmacol
                                                                                                                  46 (1998) 101-110.
                    can be obtained. Liver slices can be         drugs on metabolic pathways and if
                                                                                                               14. J. G. Hengstler, D. Utesch, P .
                    easily and rapidly produced. In addi-        the results indicate possible DDIs, to           Steinberg, K. L .Platt, B. Diener, M.
                    tion, liver slices are not exposed to        follow up with in vivo assays (15).              Ringel, N. Swales, T. Fischer, K.
                    proteolytic enzymes that can destroy             The eventual goal of the in vitro            Biefang, M. Gerl, T. Bottger, F.
                                                                                                                  Oesch Drug Metab Rev 32 (2000)
                    important membrane receptors of              studies is to predict the in vivo out-           81-118.
                    the cell. Although liver slices are in-      come in humans. Utility of human in           15. Guidance for Industry, In Vivo
                    creasingly used now in drug metabo-          vitro models to predict drug-drug in-            Drug Metabolism/Drug Interaction
                    lism studies, they have certain              teraction potential and pharmacoki-              Studies -Study Design, Data
                                                                                                                  Analysis, and Recommendations
                    disadvantages. One drawback is the           netic variability has been                       for Dosing and Labeling, Food and
                    inadequate penetration of the me-            demonstrated successfully for the                Drug Administration, November
                    dium. Liver slices cannot be cryopre-        anti psychotic drug, olanzapine (16).            1999.
                    served and they have a limited useful        Methodology of scaling in vitro data          16. S. A. Wrighton, B. J. Ring Drug
                                                                                                                  Metab. Rev. 31 (1999) 15-28.
                    experimental period.                         to predict in vivo outcome, or in vi-
                                                                                                               17. J. B. Houston Biochemical
                         Some advantages and limitations         tro-in vivo correlation, is expanding            Pharmacology 47 (1994)
                    of these in vitro systems are summa-         due to the increasing availability of            1469-1479.
                    rized in T4.                                 human in vitro systems (17). Part II
                         With greater availability in hu-        of this article will discuss the signifi-
                    man tissues and recombinant en-              cance of in vitro enzyme kinetics
                    zymes it is now possible to predict          data in the evaluation of in vivo phar-
                    potential DDIs before clinical trials.       macokinetic data.
                    Identifying the major metabolic
                    pathways of the drug and its metabo-         References
                    lites and exploring the effect of the
                    test drug on the metabolism of other           1. N. Watari, Y. Sugiyama, N.
                                                                      Kaneniwa, M. Hiura. J.
                    drugs and vice versa are two major                Pharmacokinetics and
                    goals of the in vitro studies. In vitro           Biopharmaceutics, 16 (1988)
                    studies also could help to decide that            279-301.
                    a particular drug is not a substrate for       2. S. A. Wrighton, B. J. Ring, M.
                                                                      VandenBranden, Toxicol. Pathol. 23
                    certain pathways. This reduces or                 (1995) 199-208.
                    eliminates the need to study the pos-          3. P J. Murphy, Ed, Year 2000
                                                                       .
                    sible inhibitory effects of that drug             Calendar on History of Drug
                    on other drugs metabolized by that                Metabolism, Bioanalytical Systems
                                                                      and ISSX, W. Lafayette, 1999.
                    pathway.
                                                                   4. M. Spatzenegger, W. Jaeger, Drug
                         Despite the progress in the in               Metab. Rev. 27 (1995) 397-417.
                    vitro assays, the general consensus is         5. D. W. Nebert, M. Adenisk, M. J.
                    that in vitro models are too simplistic           Coon, R. W. Estabrook, F. J.
                    to substitute for in vivo studies. In             Gonzalez, F. P Guengerich, I. C.
                                                                                     .
                                                                      Gunsalus, E. F. Johnson, B.
                    vitro studies are best suited to deter-           Kemper, W. Levin, I. R. Phillips, R.
                    mine the types of clinical trials                 Sato, M. R. Waterman, DNA 6
                    needed to assess potential DDIs.                  (1987) 1-11


23                                                                                                                      Current Separations 19:1 (2000)

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Drug Development Process from Discovery to Market

  • 1. Drug Metabolism & Pharmacokinetics in Drug Discovery: A Primer for Bioanalytical Chemists, Part I Chandrani Gunaratna In the face of advancing technology in combinatorial synthesis and high Bioanalytical Systems Inc. 2701 Kent Avenue throughput screening, the drug discovery process continues to evolve. West Lafayette, IN Preclinical drug metabolism and pharmacokinetics studies play a key role 47906-1382 in lead identification and optimization. This fast-paced development prema@bioanalytical.com process has imposed an enormous burden on the analytical chemist to design faster and more sensitive assay techniques to aid the drug discovery and development. This article, Part I of a two-part series introduces the analytical chemist to the fundamentals of drug metabolism. Part II of this series will discuss the pharmacokinetics aspects and how drug metabolism data can be used to predict pharmacokinetic parameters. Technological innovation and the ciency in the optimization of desired liphophilicity and stability are deter- pressures of competition have pharmacological activity in humans mined by measuring the octanol- caused enormous changes in the while decreasing the reliance on ani- water partition coefficient and pKa. drug discovery process. Progress in mal studies has become a challenge. These measurements are useful in molecular biology and the Human New chemical entities (NCEs) enter predicting the protein binding, tissue Genome Project has contributed to the drug discovery pipeline through distribution and absorption in the the remarkable advances made in combinatorial synthesis and rational gastrointestinal tract (1). identification of new therapeutic tar- drug design where information The selected leads are further gets. The drug discovery process is about the target of action is used to screened using in vitro tests during rapidly evolving due to the techno- design the lead compound. HTS lead optimization. The goal of lead logical developments in target iden- helps the identification of the leads optimization is to select compounds tification along with automation of that provide the required effect at with required biological activity in combinatorial synthesis and high high concentrations. In the secon- humans. Relevant pharmacokinetic throughput screening (HTS). In light dary screening stage physicochemi- parameters such as tissue penetra- of these advances, improving effi- cal properties such as solubility, tion, stability, intestinal absorption, F1 metabolism, and elimination are ob- CHEMICAL COMBINATORIAL tained using in vitro systems. These Drug development process (IND: in vitro systems include mi- Investigational New DISCOVERY crosomes, hepatocytes or tissue Le Drug, NDA: New Drug ad Application) slices for metabolite identification Ide HIGH THROUGHPUT SCREENING nti and evaluation of metabolic path- fic Le al PHYSIOCHEMICAL PROPERTIES ati ways and rates, and caco-2 cell lines in ic ad on -c l Op IN VITRO SCREENS for evaluating transcellular absorp- ies Pre tim tu d iza IN VIVO SCREENS tion. Cytotoxicity data can be ob- nS tio n ctio File IND PHASE I tained by using organ-specific cell era lines. Knowledge of the toxic poten- Int al nic PHASE II ug tial of these early leads and their Dr Cli File NDA PHASE III possible metabolites is essential for successful drug discovery. Most REGISTRATION drug candidates fail at this stage and only a few will be judged sufficiently MARKET safe and efficacious to proceed fur- ther into development. Both in vitro 17 Current Separations 19:1 (2000)
  • 2. F2 drug as schematically shown in F3 is Oral Intestines Absorption of a drug after known as ADME studies. administration. Topical Skin Drug Metabolism DRUG IV BLOOD Interest in drug or xenobiotic (for- IM, SC, IP Membranes eign compounds) metabolism can be dated back to the early 19th century. Inhalation Lung Metabolism then was known as a “detoxication” mechanism in the F3 body. In late 1930s, with the discov- Schematic representation m Metabolites ery of the synthetic azo-dye Pron- bolis of drug’s path from blood. Drug at meta tosil’s metabolism to antibacterial absorption Drug in Absorption agent sulfanilamide in the body, Site Blood eli m studying metabolism has become an ina Urine ti on important priority. This year BAS distribution and the International Society for the Other Other Study of Xenobiotics (ISSX) pro- Distribution Tissues Excretory Fluids Fluids duced a historical calendar celebrat- in g many o f the o riginal and in vivo studies are then carried drug metabolism and pharmacoki- contributions to our knowledge of out on the active candidate com- netics aspects in drug discovery. Part the metabolism of organic com- pounds. The objective in these pre- 1 of the article covers the basics of pounds (3). clinical studies is not only to identify drug metabolism. In Part II we will Metabolism is the mechanism of the most active leads with the most discuss the kinetics of drug metabo- elimination of foreign and undesir- appropriate safety profiles but also, lism and the relationship of kinetic able compounds from the body and to select the closest animal species to data to the pharmacokinetics of a the control of levels of desirable the human for toxicity studies (2). drug. compounds such as vitamins in the Understanding of pharmacokinetic body. Since information on the me- and metabolism characteristics of Path of a drug tabolism of a drug plays a significant the selected compounds is needed in role in selection and further charac- designing appropriate human clini- After administration by any route, a terization of the drug, an in-depth cal trials. Various stages of drug dis- drug will reach the blood stream as look at the mechanism of drug meta- covery are illustrated in F1. schematically shown in F2. This bolism is worth the effort. Meeting the objectives of drug process is known as absorption. The The major site of metabolism in metabolism research, whether it be drug in the blood distributes rapidly the body is the liver. Metabolism in in vitro or in vivo, requires the proc- between the plasma and blood cells liver occurs in two stages: Phase I essing of a very large number of and also between plasma proteins. pathways in liver microsomes where samples for the determination of Most drugs readily cross the capillar- the drug is functionalized and Phase drug candidates and metabolites. ies and reach the extracellular fluid II pathways in liver cells where the There is likewise a lot of structural of every organ. Lipid soluble drugs parent or the metabolite from Phase chemistry to be done to identify me- cross the cell membranes and distrib- I gets conjugated. Liver microsomes tabolites. It is important for analyti- ute into the intracellular fluid of vari- are in the endoplasmic reticulum of cal chemists to understand that the o us tissues. This process of liver cells or hepatocytes. Phase I vast majority of compounds (actu- transferring a drug from blood to reactions in microsomes are cata- ally > 99.99%) will never become various tissues is called distribution. lyzed by a group of enzymes known drugs. Thus the bioanalytical work A drug is eliminated either di- as the cytochrome P450 system that must be fast. Often elegance must be rectly through an excretory route plays a significant role in drug meta- traded for speed early in the process. such as urine, bile etc. which is bolism. The common chemical reac- Later on, for example in clinical tri- known as elimination; or indirectly tions involved in Phase I are aromatic als, the number of samples for a par- through enzymatic or biochemical hydroxylation, aliphatic hydroxyla- ticular compound will increase transformation by the liver. The lat- tion, oxidative N-dealkylation, oxi- exponentially and carefully vali- ter path of elimination is called me- dative O-dealkylation, S-oxidation, dated methods are both required and tabolism. The study of this whole reduction and hydrolysis. Most often justified. process of absorption, distribution, this simple functionalization could This article is intended to en- metabolism and elimination of a be sufficient to make a drug more lighten bioanalytical chemists on soluble, facilitating elimination www.currentseparations.com 18
  • 3. T1 toxic and carcinogenic action of Enzyme Substrates Known Cytochrome xenobiotics. P450 substrates. CYP1A2 Amitriptyline, Betaxolol, Caffeine, Clomipramine, Clozapine, There are about 30 human cyto- Chlorpromazine, Fluvoxamine, Haloperidol, Imipramine, chrome P450 enzymes, out of which Olanzapine, Ondansetron, Propranolol, Tacrine, Theophylline, o nly six, CYP1A2, CYP2C9, Verapamil, (R)-Warfarin CYP2C19, CYP2D6, CYP2E1 and CYP2A6 Coumarin, Betadiene, Nicotine CYP3A4 are the major metabolizing enzymes. CYP3A is the most abun- CYP2C9 Amitriptyline, Diclofenac, Demadex, Fluoxetine, Ibuprofen, Losartan, Naproxen, Phenytoin, Piroxicam, Tolbutamide, dant and most clinically important (S)-Warfarin isozyme in humans. It metabolizes nearly 50% of the clinically available CYP2C19 Amitriptyline, Citalopram, Clomipramine, Diazepam, Imipramine, Omeprazole drugs. T1 shows the major CYPs involved in the metabolism of some CYP2D6 Amitriptyline, Betaxolol, Clomipramine, Codeine, Clozapine, known drugs. From the table it can Desipramine, Fluoxetine, Haloperidol, Imipramine, Methadone, Metoclopramide, Metoprolol, Nortriptyline, Olanzapine, be seen that some drugs are metabo- Ondansetron, Paroxetine, Propranolol, Risperidone, Sertraline, lized by more than one isozyme. This Timolol, Venlafaxine multiple-substrate metabolism is the CYP2E1 Acetaminophen, Caffeine, Chlorzoxazone, Dextromethorphan, cause for metabolism-based drug- Ethanol, Theophylline, Venlafaxine drug interactions (DDIs). Some drugs can be inducers or CYP3A4/5 Alprazolam, Amiodaron, Amitriptyline, Astemizole, Bupropion, Buspirone, Caffeine, Carbamazepine, Cerivastatin, Cisapride, inhibitors of specific isozymes but Clarithromycin, Clomipramine, Codeine, Cyclosporine, not necessarily substrates. Enzyme Dexamethasone, Dextromethorphan, DHEA, Diazepam, inducers increase specific enzyme Diltiazem, Donepezil, Doxycycline, Erythromycin, Estradiol, Felodipine, Fluoxetine, Imipramine, Lansoprazole, Lidocaine, levels by modulating the gene ex- Loratadine, Lovastatin, Midazolam, Nicardipine, Nifedipine, pression. Some drugs induce P450 Omeprazole, Orphenadrine, Paroxetine, Progesterone, enzymes that are not involved in their Quinidine, Rifampin, Sertraline, Sibutramine, Sildenafil, Simvastatin, Tacrolimus, Tamoxifen, Terfenadine, metabolism. For example, omepra- Testosterone, Theophylline, Verapami, Vinblastine, (R)-Warfarin zole induces human CYP1A2 but is metabolized by CYP2C19 and through the kidneys. Further conju- Genetic polymorphism CYP3A4 (6). Administration of gation in Phase II occurs by glu- omeprazole can lower the effect of a curonidation, sulfation, amino acid Cytochrome P450 enzymes are drug normally metabolized by conjugation, acetylation, methyla- grouped into families and sub fami- CYP1A2, e.g., acetaminophen. tion or glutathione conjugation to lies based on their structural similar- Enzyme inhibitors function in facilitate elimination. ity (5). Families include CYPs with different ways. The competitive in- >40% amino acid sequence homol- hibitors compete with the substrate Cytochrome P 450 system ogy and are designated by a number for the active site, e.g., fluvoxamine after CYP. Subfamilies are the CYPs and caffeine for CYP1A2 (7). The Cytochrome P450 (CYP) enzyme within a family that have >60% non-competitive inhibitors bind to system, a very large group of en- amino acid sequence homology and the enzyme-substrate complex or to zymes encoded by the P450 gene are designated by a letter following the heme group, e.g., ketoconazole. superfamily, is one of the widely the number. For example CYP3A4 is The third type, irreversible inhibi- studied topics in drug development. a cytochrome P450 enzyme, belong- tors inactivate the enzyme either by CYPs are membrane bound proteins ing to family 3 and subfamily A. The heme binding or protein binding. En- with an approximate molecular last number 4, refers to the sequence zyme inhibition can lead to higher weight of 50 kD, and contain a heme of discovery. systemic levels of a drug causing moiety. CYPs and other mixed func- Several of the drug metabolizing enhanced efficacy or toxicity. This tion oxygenases are mainly found in enzymes, for example the CYP2 should be considered when multiple the endoplasmic reticulum of the family, are polymorphic (having drugs are simultaneously prescribed liver. The monooxygenase function more than one variant of the gene). and/or when over-the-counter drugs of CYP450 involves a number of Although the CYP isozymes gener- or neutraceuticals are concomitantly steps but the end reaction is the trans- ally have similar functional proper- administered with prescription fer of one oxygen atom to the sub- ties, each one is different and has a drugs. strate (R) that has a site for oxidation distinct role. This polymorphism When several enzymes metabo- as shown below (4). forms a basis for interindividual dif- lize a drug, e.g. propranolol (8), ad- ferences in the efficacy of drug treat- ministration of an enzyme inhibitor NADPH + H+ + O2 + R-H CYP450 NADP+ + H2O + R-OH ment, side effects of drugs and the will not have a great effect since the 19 Current Separations 19:1 (2000)
  • 4. T2 Ultra extensive metabolism can Known inhibitors Enzyme Inducers Inhibitors cause therapeutic failure due to re- and inducers of CYP isozymes duced bioavailability or lack of acti- CYP1A2 Cigarette Smoke, Phenobarbital, Enoxacin, Ciprofloxacin, Ritonavir, Carbamazepine, Grepafloxacin, vation of the drug whereas poor Charbroiled Foods, Vegetables, Fluvoxamine, Fluoxetine, metabolism can lead to drug toxicity Omeprazole Nefazodone and sometimes death. For optimal CYP2A6 Barbiturates drug therapy, the prescribing physi- cian should have the knowledge of CYP2C9 Rifampin, Carbamazepine, Amiodarone, Fluvastatin, the genetic makeup of the CYP en- Ethanol, Phenytoin Fluvoxamine, Fluoxetine, Fluconazole, Miconazole, zymes in the patient. Metronidazole, Ritonavir, Sulfamethoxazole Outcome of drug metabolism CYP2C19 Rifampin Fluvoxamine, Fluoxetine, Ticlopidine, Ritonavir Various possibilities of the outcome of drug metabolism are illustrated in CYP2D6 Pregnancy Quinidine, Fluoxetine, F4. Paroxetine, Sertraline, Cytochrome P450 reactions Thioridazine, Cimetidine, make substrates more hydrophilic Diphenhydramine, for easy elimination through the kid- Haloperidol, Ticlopidine (Ticlid), Ritonavir neys. Although most often this re- sults in inactivation of the drug, CYP2E1 Ethanol, Isoniazid, Ritonavir Cimetidine, Watercress some compounds form active meta- CYP3A4/5 Carbamazepine, Dexamethasone, Ketoconazole, Itraconazole, bolites. These active metabolites can Rifapentine, Prednisone, Growth Erythromycin, Grapefruit enhance, modify, or inhibit the desir- Hormone, Rifampin, Phenobarbital, Juice, Fluvoxamine, able activity of the drug. Sometimes Phenytoin,Troglitazone Fluoxetine, Diltiazem, Verapamil, Clarithromycin, the active metabolite initiates the Omeprazole), Ritonavir, pharmacological activity. This func- Indinavir tion is used in designing pro drugs. Pro drugs are defined as therapeutic agents that are inactive but are trans- F4 formed into the active form by enzy- Toxicity Toxic Metabolite End results of drug matic reactions. This is very useful metabolism Altered Activity when the active form is unstable or Active Metabolite poorly water soluble, making the Enhanced DRUG Activity formulation a challenge. Following Inactive Metabolite Loss of oral administration, the hypotensive Activity drug Enalapril maleate (Vasotec) un- Reversible Metabolite Prolonged dergoes ethyl ester hydrolysis to Activity form enalaprilate, which is the active drug has an alternate pathway. T2 tered to different individuals. Ge- drug. shows some inducers and inhibitors netic polymorphism of CYP450 en- Some drugs have very little of the CYP isozymes. zymes characterize the general therapeutic potential but form a more There is a wide variation in the population into three groups: pharmacologically active metabo- expression, activity and concentra- lite. For example codeine itself has tions of different isozymes among a) Extensive metabolizers (EM): very low analgesic activity. It forms individuals, species and ethnic normal population. morphine, the more active form groups. The expression or the activ- b) Poor metabolizers (PM): Indi- when it is metabolized by CYP2D6. ity of these enzymes is influenced by viduals who inherit two inactive al- Poor metabolizers of CYP2D6 or pa- factors such as species specificity, leles (alternative forms of the gene) tients who are taking CYP2D6 in- genetic polymorphism, gender- hor- showing complete absence of en- hibitors, therefore, do not experience monal control, age, disease and envi- zyme activity. the analgesic property of codeine. ronmental inducers (caffeine, c) Ultra extensive metabolizers In some cases the metabolite ex- cigarette smoke). The variability as- (UEM): Individuals with one com- hibits the same pharmacological ac- sociated with the CYP450 enzymes mon allele and one amplified allele tivity as the parent and is less toxic in each individual results in marked showing enhanced enzyme expres- than the parent. One such example is differences in response when the sion. the antihistamine drug fexofenadine same drug and the dose is adminis- (Allegra) which is a metabolite of www.currentseparations.com 20
  • 5. terfenedine (Seldane). Seldane was trials later. Age, hormonal control traceuticals and herbal medicines withdrawn from the market due to its (gender, pregnancy), genetic poly- like St. John’s Wort, Gingko Biloba, fatal interactions with erythromycin morphism, disease state, are all inter- the possibility increases consider- and ketoconazole in some patients nal facto rs that affect the ably for drug interactions to occur. when concomitantly administered. metabolism. Infants for example, While there are many examples lack Phase II enzymes whereas eld- Influence of Drug Metabolism where both parent and the metabolite erly patients have diminished meta- on Drug Development have the same pharmacological ac- bolism and excretion due to the tivity, some metabolites will show aging process. Although there is no In drug development it is important different pharmacological activity evidence of clinically relevant gen- to have information on the enzymes from the parent. This may lead to the der differences in metabolism of hu- responsible for the metabolism of a discovery of a new drug. Loxapine is mans, there have been studies drug candidate as early as possible in an antipsychotic drug that undergoes showing the effect of rat sex hor- the design phase. Knowledge of the extensive metabolism. The N-de- mones on bioavailability. Liver dis- metabolic pathways, metabolite sta- methylated metabolite, amoxapine eases such as hepatitis, liver cancer, bility, toxicity and the specific however has anti depressant activity or cirrhosis impair drug metabolism isozymes involved in the metabolism and is prescribed for that indication. either due to the decreased number are all important information in the Metabolism can also result in of functional hepatocytes or to the drug development process and in toxic metabolites. Formation of re- altered NADPH/NAD ratio in the planning human clinical studies. The active metabolic intermediates is one liver. If the drug is cleared only by rate of metabolism affects the oral of the causes for drug toxicity. Oxi- the liver the impaired metabolism bioavailability and clearance in hu- dation to electrophilic intermediates can result in drug overdose. mans and preclinical species. As dis- or reduction to nucleophilic radicals Genetic or hereditary factors are cu ssed b efo re, polymorphic that can attack DNA or RNA and the most significant factor in drug enzymes will lead to high interindi- induce carcinogenicity are two ma- metabolism (10). Genetic differ- vidual variability and potential for jor reactions by which toxicity is ex- ences among individuals or ethnic DDIs. Genetic information is used to erted. Although many leads are groups can lead to an excessive or predict the response of individual pa- abandoned early on in drug discov- prolonged therapeutic effect or toxic tients and patient populations to ery stage due to the toxic metabolite overdose. For example, the enzyme drugs and to tailor drug selection and formation, presence of a toxic meta- CYP2D6 which metabolizes a large dosage to fit the individual’s genetic bolite does not always implies toxic- number of drugs has 16 alleles. The constitution. Metabolite profiles are ity in a given drug candidate since activity of this enzyme varies widely important for designing prodrugs there are other factors that can make among ethnic groups (11). About 1% and pharmacologically active meta- the metabolite toxic or non-toxic. of Arabics, 30% Chinese and 7-10% bolites and for selecting the right Presence of a toxic metabolite how- Caucasians are poor metabolizers of animal species for toxicology stud- ever raises a red flag, which must be CYP2D6 drugs. Another example is ies. Structural modification of the extensively examined in animal tox- CYP2C19, which contributes to the drug candidate can alter the metabo- icity studies. metabolism of anxiolytics (e.g. di- lism. Highly hydrophilic or highly Some drugs are metabolized re- azepam). About 14-22% Asians and lipophilic compounds are not suit- versibly. For example, sulindac, a 3-6% Caucasians are poor metabo- able because they result in poor nonsteroidal anti-inflammatory drug lizers of CYP2C19. Elevated plasma bioavailability and very slow or very is reversibly metabolized to sulindac drug levels in these populations after fast excretion rates. In these in- sulphide which has anti-inflamma- drug administration can increase the stances replacing an active group tory and analgesic properties and is sedative effect of the drug. with another non-reactive group in irreversibly metabolized to sulindac Environmental factors such as the compound can achieve greater sulphone which has been suggested diet, smoking, alcohol consumption metabolic stability. For example, re- to possess antiproliferative effects and concomitant drug therapy also placing a methyl group by a t-butyl against tumors (9). influence the outcome of drug meta- group can prevent demethylation. bolism. Cigarette smoke produces Similarly, oxidation of aromatic Factors Affecting Drug poly aromatic hydrocarbons (PAH) rings can be prevented by substitut- Metabolism which in duce CYP1A2 (12). ing them with stronger electron with- CYP1A2 metabolizes the PAHs to d rawing groups (e.g. CF3). There are marked differences in drug carcinogens responsible for lung and Information obtained from pre-clini- metabolism across species. Select- colon cancer. Grapefruit juice is a cal drug metabolism studies can be ing a species that closely represents good example of dietary constituent fed back to the design team to intro- the human is very crucial in drug that inhibits CYP3A4 (13). With the duce functional groups which will discovery and in designing clinical new boom in consumption of neu- alter the physical properties to make 21 Current Separations 19:1 (2000)
  • 6. T3 tify the metabolites and the sites at Microsomal incubations are most Information that can be In vitro studies can which metabolism occur. A variety often used to obtain information on obtained from in vitro give information on: of hepatic in vitro systems differing Phase I reactions. One disadvantage studies. • Metabolite stability in biological intricacy are now com- is that the information is not com- • Metabolite profile mercially available for metabolism plete as from the cellular systems. • Metabolite identification studies. Most widely used systems • Interspecies comparisons are discussed below in detail. Isolated Hepatocytes • Toxicology species selection • CYP induction/inhibition Cell cultures or cell suspensions can Expressed Enzymes • Drug/Drug interaction studies • CYP isoform identification be used to study multiple aspects of • Phase II enzyme studies Advances in molecular biology have drug metabolism, drug transport enabled the identification and char- across cell membranes, cytotoxicity the compounds more metabolically acterization of a large number of in- and enzyme induction in an environ- stable. Thus final selection of a suc- dividual CYP genes. Specific cDNA ment where enzymes and co-factors cessful drug lead depends im- sequences for particular CYP are present in normal physiological mensely on the drug metabolism isozymes have been cloned and ex- concentrations and cellular integrity studies. pressed heterologously. These ex- is maintained. Hepatocytes are used pressed enzymes including human to study both Phase I and Phase II Pre-clinical Drug enzymes are now commercially reactions. Cells can be either primary Metabolism Studies available as pure systems. Since the or permanent cell cultures. Primary conditions of reactions such as con- cell lines are most often used for drug It is important to know how the drug centrations of enzyme, substrate and metabolism studies because perma- is eliminated early in the drug devel- co-factor can be carefully controlled, nent cell lines possess very little or opment process. If elimination is enzyme systems have become a no enzyme activity. Primary cells are mainly by metabolism, then the me- powerful tool to study drug metabo- isolated from fresh liver tissue and tabolic pathways and products need lism. This system is very useful in the can be used immediately after isola- to be understood. Knowing the tox- study of kinetics, specificity and the tion or culture for long-term studies. icity of a drug and its metabolites mechanism of the enzyme reaction. However, cultured or cryopreserved before entering human clinical trials However, folding or the posttransla- cells lose the P450 activity rapidly is essential to avoid failures later on tional modifications and enzyme ac- with time (14). Also, hepatocytes in the process. Both in vitro and ani- tivity of the expressed enzyme may cannot be frozen and thawed or be mal in vivo studies are done in the differ from the native enzyme. prepared from previously frozen pre-clinical stage. liver. Therefore, there is a great need Most promising compounds are Microsomes for research in improving cryopre- selected from in vitro studies and servation technology and stabiliza- their pharmacokinetic parameters Microsomes can be prepared easily tion of P450 activity in primary are obtained in two animal species, from frozen liver tissues. They con- cultures. With the increased avail- commonly in rat and dog in the in tain most of the oxidative drug me- ability of fresh human tissues from vivo animal studies. This article will tabolizing enzymes. Their easy various commercial and non-profit focus on the in vitro studies and in- preparation and good long-term sta- institutions, human hepatocytes formation obtained from them. bility at -80 °C make microsomes the have become the most widely used most frequently used in vitro system and preferred in vitro system. In Vitro Studies in drug metabolism studies. Mi- crosomes are isolated from liver cells Tissue Slices The in vitro studies during pre-clini- by disrupting the cellular contents cal screening are low-throughput and centrifugation at 100,000 ✕ g. While tissue slices have been used systems. Primary in vitro metabolic Liver microsomes can be manipu- from other organs like brain, heart, systems used in drug metabolism in- lated by induction and inhibition to and kidney, liver is the most com- volve hepatic enzymes or tissue vary the activity or the levels of the monly used tissue type for drug me- preparations. Information (T3) ob- isozymes. The ability to phenotype tabolism experiments. Tissue slices tained by incubating a test drug with microsomes greatly increases the have certain advantages over other these systems can be used as feed- utility of this system in the identifi- systems. With intact cell-cell junc- back to design safer and more meta- cation of specific isozymes responsi- tions, normal hepatic cellular archi- bolically stable drugs. Compounds ble. Metabolic information such as tecture is retained in the tissue. Since can be ranked according to the meta- metabolic profiles, stability, metabo- they contain the complete comple- bolic stabilities. Mass spectrometry lite identification and kinetics can be ment of drug metabolizing enzymes is used as a qualitative tool to iden- obtained from microsomal systems. with all the cofactors present in rele- www.currentseparations.com 22
  • 7. T4 6. H. Shih, G. V. Pickwell, D. K. Guenette, B. Bilir, L. C. Quattrochi, Comparison of System Advantages Disadvantages Future Needs Hum. Exp. Toxicol . 18 (1999) in vitro systems. 95-105 Expressed Pure system Single system Integration with other 7. O. V. Olesen, K. Linnet, J Clin Enzymes enzyme systems Psychopharmacol 20 (2000) 35-42. Microsomes Well-used, Long Limited information, 8. Y. Masubuchi, S. Hosokawa, T. term storage at Need cofactors Horie, T. Suzuki, S. Ohmori, M. -80°C,Well- Kitada, and S. Narimatsu, Drug characterized Metab. Disposition, 22 (1994) 909-915. Isolated cells Integrated cellular Short life time, Increased availability 9. N. M. Davies, M. S. Watson Clin. (e.g. Hepatocytes) system Limited enzyme of human cells, Pharmacokinet. 32 (1997) 437-459 stability Better preservation 10. J. van der Weide, L. S. Steijns Ann Slices Easy to prepare, Limited medium Greater availability Clin Biochem 36 (1999) 722-729. Cellular integrity penetration, of human tissues, 11. H. K. Kroemer, M. Eichelbaum Life maintained Short-term viability Cryopreservation Sciences, 26 (1995) 2285-2298. 12. S. Zevin, N. L. Benowitz Clin Pharmacokinet 36 (1999) 425-438. vant concentrations, complete infor- FDA guidelines suggest first using in 13. D. G. Bailey, J. Malcolm, O. Arnold, mation on the metabolism reactions vitro studies to assess the effect of J. D. Spence Br J Clin Pharmacol 46 (1998) 101-110. can be obtained. Liver slices can be drugs on metabolic pathways and if 14. J. G. Hengstler, D. Utesch, P . easily and rapidly produced. In addi- the results indicate possible DDIs, to Steinberg, K. L .Platt, B. Diener, M. tion, liver slices are not exposed to follow up with in vivo assays (15). Ringel, N. Swales, T. Fischer, K. proteolytic enzymes that can destroy The eventual goal of the in vitro Biefang, M. Gerl, T. Bottger, F. Oesch Drug Metab Rev 32 (2000) important membrane receptors of studies is to predict the in vivo out- 81-118. the cell. Although liver slices are in- come in humans. Utility of human in 15. Guidance for Industry, In Vivo creasingly used now in drug metabo- vitro models to predict drug-drug in- Drug Metabolism/Drug Interaction lism studies, they have certain teraction potential and pharmacoki- Studies -Study Design, Data Analysis, and Recommendations disadvantages. One drawback is the netic variability has been for Dosing and Labeling, Food and inadequate penetration of the me- demonstrated successfully for the Drug Administration, November dium. Liver slices cannot be cryopre- anti psychotic drug, olanzapine (16). 1999. served and they have a limited useful Methodology of scaling in vitro data 16. S. A. Wrighton, B. J. Ring Drug Metab. Rev. 31 (1999) 15-28. experimental period. to predict in vivo outcome, or in vi- 17. J. B. Houston Biochemical Some advantages and limitations tro-in vivo correlation, is expanding Pharmacology 47 (1994) of these in vitro systems are summa- due to the increasing availability of 1469-1479. rized in T4. human in vitro systems (17). Part II With greater availability in hu- of this article will discuss the signifi- man tissues and recombinant en- cance of in vitro enzyme kinetics zymes it is now possible to predict data in the evaluation of in vivo phar- potential DDIs before clinical trials. macokinetic data. Identifying the major metabolic pathways of the drug and its metabo- References lites and exploring the effect of the test drug on the metabolism of other 1. N. Watari, Y. Sugiyama, N. Kaneniwa, M. Hiura. J. drugs and vice versa are two major Pharmacokinetics and goals of the in vitro studies. In vitro Biopharmaceutics, 16 (1988) studies also could help to decide that 279-301. a particular drug is not a substrate for 2. S. A. Wrighton, B. J. Ring, M. VandenBranden, Toxicol. Pathol. 23 certain pathways. This reduces or (1995) 199-208. eliminates the need to study the pos- 3. P J. Murphy, Ed, Year 2000 . sible inhibitory effects of that drug Calendar on History of Drug on other drugs metabolized by that Metabolism, Bioanalytical Systems and ISSX, W. Lafayette, 1999. pathway. 4. M. Spatzenegger, W. Jaeger, Drug Despite the progress in the in Metab. Rev. 27 (1995) 397-417. vitro assays, the general consensus is 5. D. W. Nebert, M. Adenisk, M. J. that in vitro models are too simplistic Coon, R. W. Estabrook, F. J. to substitute for in vivo studies. In Gonzalez, F. P Guengerich, I. C. . Gunsalus, E. F. Johnson, B. vitro studies are best suited to deter- Kemper, W. Levin, I. R. Phillips, R. mine the types of clinical trials Sato, M. R. Waterman, DNA 6 needed to assess potential DDIs. (1987) 1-11 23 Current Separations 19:1 (2000)