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Alitora Innovation Networks

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Alitora Systems presents Innovation Networks for Life Sciences at Semantic Technology Conference 2009.

Alitora Systems presents Innovation Networks for Life Sciences at Semantic Technology Conference 2009.

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Alitora Innovation Networks Alitora Innovation Networks Presentation Transcript

    • Presenter:
    • Marc Hadfield
    • (917) 991-9685
    • www.alitora.com
    Building Innovation Networks in the Life Sciences http://en.wikipedia.org/wiki/Collaborative_Innovation_Networks
    • Marc Hadfield, President and CTO
      • Creator of Alitora Technology
        • Semantic Database
        • Natural Language Processing applied to Life Sciences
    • Alitora Systems
      • Semantic Software co.
      • Software-as-a-Service/Platform-as-a-Service
  • How can we: Surface & Distribute Insights from Unstructured Data? Or: How do we deliver to you the interesting bits of knowledge out of a lot of text?
  • Problem: Insights from Data Silos Case Study: Eli Lilly / Life Science
  • Solution: Natural Language Processing? Transform a pile of Documents into A pile of Facts . We still have a pile.
  • Solution: Natural Language Processing + Linked Relationships via Ontologies? What in the network is important ?
  • Solution: Natural Language Processing + Linked Relationships + Relevancy? Relevant to whom?
  • Solution: Natural Language Processing + Linked Relationships + Relevancy + Collaboration. Ah Ha! Relevant information can find me via my context. My colleagues can help.
  • Then we can Surface & Distribute Insights Deploy solution as a service so Insights can be embedded anywhere.
  • People Databases, Ontologies News, PR, Documents, Reports Innovation Network
  • Innovation Network - DEMO Web Application Application Plug-In
  • Alitora Systems Architecture
    • Interface
      • Web, Cytoscape
    • ASAPI Webservice
      • Search, Collaborate
      • Annotate
      • Process Documents
    • kHarmony Semantic DB
      • Semantic / Graph DB
    • Alitora Foundry
      • NLP Components
  • Collaboration, Entitlement
    • Scope: User, Colleague, Team, Organization, Database Segment
    • Entitlements are Semantic Statements
    • Cross-Department
      • Single Organization
      • Independent Segments for Departments and Databases
    • Cross Organization (“in the Cloud”)
      • Multiple Organization Deployment
      • Secure Shared Segments
      • Example: Pharmaceutical and CRO
    • Web Service
      • accessed by Enterprise Applications
        • i.e. Documentum, Sharepoint, LDAP
  • Innovation Network kHarmony™ Data Representation: Each Object has Properties “ chunks” of RDF Unique URI “ Core” RDFs Model
  • Innovation Network kHarmony™ HyperEdges: Statements about Statements Track Provenance Difficult in RDF alone (everything “reified”)
  • kHarmony™ Relevancy
    • Function[]
      • Graph Topology Metrics
      • Paths to User
      • Time
      • Properties
        • including “certainty”
      • Neighbor Properties
    Confidential
  • Semantic Collaborative Statements
  • Semantic Knowledge Statements Domain Ontology + Instance Statements
  • Semantic Knowledge Statements Direct or Inferred
  • Text Mine Unstructured Data: Semantic Parse Graph Representation
    • “ Suppression of endogenous Bim greatly inhibits Gadd45a induction of apoptosis.”
    • [action, inhibit,
    • [action, suppress,
    • [unknown],
    • [gp, endogenous Bim]
    • ],
    • [action, induce,
    • [gp, Gadd45a],
    • [process, apoptosis]
    • ],
    • ]
  • Entity and Relationship Normalization
    • Heuristics
    • Bayesian
    • String Similarity
    • Abbreviation Expansion
    • Species Context
    • Output a “score”
    Confidential Copyright Alitora Systems, Inc. 2009
  • Innovation Network
    • Current Platform Applications for Customers & Partners:
    • Life Science BI and R&D
    • Social Network, Contextual Content
    • Media, Real Time Web
    • Brand Tracking, Real Time Web
    “ Semantics-as-a-Service” “ Platform-as-a-Service”
  • Innovation Network - DEMO
    • Demo Semantic Mash-Up:
    • Alitora Systems API
    • Alitora Foundry Biomedical Parser
    • Yahoo News Feeds
    • OpenCalais API
    • 10 Biomedical Data sources, Freebase data
    • GWT-based Web Interface
    • Cytoscape-based Graph Visualization
  • Innovation Network - DEMO Web Application Application Plug-In … including OpenCalais
  • Contact Information
    • Alitora Systems
    • 155 Water Street
    • New York, NY 11201
    • (917) 463-4776
    • [email_address]
  • Innovation Network Interface
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  • Innovation Network
  • Alitora Foundry Toolkit
    • Test and Train Annotators
  • Alitora Foundry Toolkit
    • Other Annotators:
      • OpenCalais (Business Relationships)
      • Oscar3 (Chemical Names)
        • http://sourceforge.net/projects/oscar3-chem
        • Nico Adams, et al.
        • University of Cambridge