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Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
Alitora Innovation Networks
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Alitora Innovation Networks

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Alitora Systems presents Innovation Networks for Life Sciences at Semantic Technology Conference 2009. …

Alitora Systems presents Innovation Networks for Life Sciences at Semantic Technology Conference 2009.

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Transcript

  • 1.
    • Presenter:
    • Marc Hadfield
    • (917) 991-9685
    • www.alitora.com
    Building Innovation Networks in the Life Sciences http://en.wikipedia.org/wiki/Collaborative_Innovation_Networks
  • 2.
    • Marc Hadfield, President and CTO
      • Creator of Alitora Technology
        • Semantic Database
        • Natural Language Processing applied to Life Sciences
    • Alitora Systems
      • Semantic Software co.
      • Software-as-a-Service/Platform-as-a-Service
  • 3. How can we: Surface & Distribute Insights from Unstructured Data? Or: How do we deliver to you the interesting bits of knowledge out of a lot of text?
  • 4. Problem: Insights from Data Silos Case Study: Eli Lilly / Life Science
  • 5. Solution: Natural Language Processing? Transform a pile of Documents into A pile of Facts . We still have a pile.
  • 6. Solution: Natural Language Processing + Linked Relationships via Ontologies? What in the network is important ?
  • 7. Solution: Natural Language Processing + Linked Relationships + Relevancy? Relevant to whom?
  • 8. Solution: Natural Language Processing + Linked Relationships + Relevancy + Collaboration. Ah Ha! Relevant information can find me via my context. My colleagues can help.
  • 9. Then we can Surface & Distribute Insights Deploy solution as a service so Insights can be embedded anywhere.
  • 10. People Databases, Ontologies News, PR, Documents, Reports Innovation Network
  • 11. Innovation Network - DEMO Web Application Application Plug-In
  • 12. Alitora Systems Architecture
    • Interface
      • Web, Cytoscape
    • ASAPI Webservice
      • Search, Collaborate
      • Annotate
      • Process Documents
    • kHarmony Semantic DB
      • Semantic / Graph DB
    • Alitora Foundry
      • NLP Components
  • 13. Collaboration, Entitlement
    • Scope: User, Colleague, Team, Organization, Database Segment
    • Entitlements are Semantic Statements
    • Cross-Department
      • Single Organization
      • Independent Segments for Departments and Databases
    • Cross Organization (“in the Cloud”)
      • Multiple Organization Deployment
      • Secure Shared Segments
      • Example: Pharmaceutical and CRO
    • Web Service
      • accessed by Enterprise Applications
        • i.e. Documentum, Sharepoint, LDAP
  • 14. Innovation Network kHarmony™ Data Representation: Each Object has Properties “ chunks” of RDF Unique URI “ Core” RDFs Model
  • 15. Innovation Network kHarmony™ HyperEdges: Statements about Statements Track Provenance Difficult in RDF alone (everything “reified”)
  • 16. kHarmony™ Relevancy
    • Function[]
      • Graph Topology Metrics
      • Paths to User
      • Time
      • Properties
        • including “certainty”
      • Neighbor Properties
    Confidential
  • 17. Semantic Collaborative Statements
  • 18. Semantic Knowledge Statements Domain Ontology + Instance Statements
  • 19. Semantic Knowledge Statements Direct or Inferred
  • 20. Text Mine Unstructured Data: Semantic Parse Graph Representation
    • “ Suppression of endogenous Bim greatly inhibits Gadd45a induction of apoptosis.”
    • [action, inhibit,
    • [action, suppress,
    • [unknown],
    • [gp, endogenous Bim]
    • ],
    • [action, induce,
    • [gp, Gadd45a],
    • [process, apoptosis]
    • ],
    • ]
  • 21. Entity and Relationship Normalization
    • Heuristics
    • Bayesian
    • String Similarity
    • Abbreviation Expansion
    • Species Context
    • Output a “score”
    Confidential Copyright Alitora Systems, Inc. 2009
  • 22. Innovation Network
    • Current Platform Applications for Customers & Partners:
    • Life Science BI and R&D
    • Social Network, Contextual Content
    • Media, Real Time Web
    • Brand Tracking, Real Time Web
    “ Semantics-as-a-Service” “ Platform-as-a-Service”
  • 23. Innovation Network - DEMO
    • Demo Semantic Mash-Up:
    • Alitora Systems API
    • Alitora Foundry Biomedical Parser
    • Yahoo News Feeds
    • OpenCalais API
    • 10 Biomedical Data sources, Freebase data
    • GWT-based Web Interface
    • Cytoscape-based Graph Visualization
  • 24. Innovation Network - DEMO Web Application Application Plug-In … including OpenCalais
  • 25. Contact Information
    • Alitora Systems
    • 155 Water Street
    • New York, NY 11201
    • (917) 463-4776
    • [email_address]
  • 26. Innovation Network Interface
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  • 42. Innovation Network
  • 43. Alitora Foundry Toolkit
    • Test and Train Annotators
  • 44. Alitora Foundry Toolkit
    • Other Annotators:
      • OpenCalais (Business Relationships)
      • Oscar3 (Chemical Names)
        • http://sourceforge.net/projects/oscar3-chem
        • Nico Adams, et al.
        • University of Cambridge

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