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Chemistry and Materials Research www.iiste.org
ISSN 2224- 3224 (Print) ISSN 2225- 0956 (Online)
Vol.3 No.7, 2013
100
Molecular Modeling Simulation Study of Interactions in
Starch/Poly(acrylic acid) Blend
Ali H. Al_Mowali*
,Zaki N. Kadhum, Tahseen A. Saki and Ali J. Hameed
Chemistry Department, College of Science, University of Basrah, Basrah, Iraq
*
E-mail of the corresponding auther: ali_almoali@yahoo.com
Abstract
In this work we have studied the nature of interactions between starch and poly(acrylic acid) by using semi-
empirical AM1 and PM3 methods. Theoretical computations involved the determination of optimal geometries,
binding energies and vibrational frequencies of the blended polymers. Calculations are performed for four pairs
of complexes of glucose (Glu) in starch and acrylic acid (mAA) in poly(acrylic acid) PAA. Based on results of
calculation, the binding energies show negative values, which indicate that the interactions of glucose and acrylic
acid are favorable at the lower energy. This means that the interactions of starch and PAA are stable. Vibrational
frequency analysis of hydroxyl OH and carboxyl C=O groups of the 1Glu–1mAA, 1Glu–2mAA and 1Glu–
3mAA complexes with single hydrogen bond showed that the stretching of these groups shifts to a lower wave
number due to the formation of hydrogen bonds.
Keywords:Polymer blends, AM1, PM3.
1.Introduction
Blending of chemically different polymers is an important tool in industrial production of tailoring products with
optimized material properties(Sionkowska 2001). Another route, polymer blending is a simple yet attractive
method to provide combined physical and mechanical properties. Blends of synthetic polymers and starches have
been extensively studied since these blends can be prepared so they are biodegradable. Among all natural
biopolymers, starch has been considered as one of the most promising materials because of its easy availability,
biodegradability and lower cost.
Starch is the major form of stored carbohydrate in plants such as corn, wheat,rice and potatoes. Starch is
composed of a mixture of two polymers of glucose – linear amylose and a highly branched
amylopectin(Tang&Alavi 2011). To impart biodegradability to polymers, starch has been blended with common
polymers such as poly(vinyl chloride)(Westhoff et al 1974), polyethylene,(Griffin1974&Otey et al 1987)
alpoly(ethylene-co-acrylic acid),(Fanta et al 1992)and poly(ethylene-co-vinyl alcohol)(George et al 1994).
Biodegradable films from starch and ethylene–acrylic acid (EAA) copolymers with the aim of improving their
water resistance and preventing them from becoming brittle with age were studied(Otey et al 1977). Compatible
mixtures containing up to 90% starch and EAA copolymer were milled or casted from aqueous dispersions into
flexible, non-supported films without the aid of a conventional plasticizer. These films were water resistant and
appeared to have acceptable physical properties for a variety of packaging and agricultural mulch applications.
The added EAA may be associated with the starch molecules enough to hold them in their expanded, flexible
states. As the amount of EAA is decreased, this association can be partially disrupted, especially with age or in
the presence of a solvent such as water. A technique for blending gelatinized starch and poly(ethylene-co-acrylic
acid) (EAA) to produce flexible blown films that contain high levels of starch was studied (Otey et al 1980).
Starch is a highly hydrophilic macromolecule. It is often used as the degradable additive in the preparation of
biodegradable polyethylene film. Polyethylene is resistant to microbial breakdown(Leja et al 2010). The great
difference between starch and polyethylene in their properties results in poor compatibility of
starch/polyethylene blends (Shujun et al 2006). The use of compatibilizer containing groups capable of hydrogen
bonding with starch hydroxyls increases the compatibility in starch-polyethylene blends. Ethylene/acrylic acid
copolymer (EAA) is such an example (Yin et al 2008,Jasberg et al 1992, Fanta et al 1990&Villart et al 1995).
The interactions between starch (amylose portion) and poly-propylene carbonate by employing DFT based
B3LYP and semi-empirical AM1 and PM3 methods on five complexes were studied (Joshi&Mebel 2010).
Meanwhile, the use of semi-empirical AM1 method to study the interaction on three pairs of starch and poly
vinyl alcohol was carried out(Saleh et al 2009).
Recently, semi-empirical AM1 (Austin Model 1) and PM3 (Parameterized Austin Model 3) methods to study the
hydrogen bonding interactions between poly vinyl alcohol and starch were employed(Sin et al 2010). In this
study, molecular modeling simulations have been studied to understand the compatibility and interactions
between starch and poly(acrylic acid) . In addition to these computational methods, the interactions between
these two polymers have also been evaluated using vibrational frequency analysis.
In this work,we have investigated theoretically four pairs of complexes of glucose (Glu) in starch and acrylic
Chemistry and Materials Research www.iiste.org
ISSN 2224- 3224 (Print) ISSN 2225- 0956 (Online)
Vol.3 No.7, 2013
101
acid (mAA) in poly(acrylic acid) PAA by using the semi-empirical AM1 and PM3 methods. We aimed to
evaluate the interaction between glucose (Glu) in starch and acrylic acid (mAA) in poly(acrylic acid) PAA
through the formation of hydrogen bonds between them.
2. Theoretical Methods
Geometrical optimizations were carried out by using the AM1 & PM3 semi-empirical methods as implemented
in the Hyperchem 8 package. All structures were fully optimized at the Restricted Hartree – Fock (RHF).
Geometrical optimizations were carried out by using a conjugate gradient method (Polka – Ribiere
lgorithm) .The self-consistent-field SCF convergence was set to 0.1 Kcal mol-1
in the calculations. Also,
Hyperchem was used to generate binding energy and vibrational frequency analysis to produce infrared
absorption of the complexes. Three pairs of complexes consisting of increasing numbers of glucose (Glu.) and
PAA monomers (mAA) have been studied. The geometrically optimized structures for all the three complexes at
different levels of theory are represented in Figs.1-3.
3. Results and Discusion
3.1 Hydrogen bonds
The important factor that determines the properties of a blend is the compatibility/miscibility of polymer pairs.
The chemical structures of the polymeric components have a significant effect on the interactions between the
polymers resulting in miscibility of the polymer blend. For starch and PAA blends,both the Carbonyl functional
groups of AA have the potential to interact with the hydroxyl groups of Starch via hydrogen bonding. In general,
the hydrogen bond is a directed, attractive interaction between electron-deficient hydrogen and a region of high
electron density. Most frequently, a hydrogen bond is of the X–H/Y type, where X and Y are electronegative
elements and Y possesses one or more lone electron pairs. In most cases, X and Y are F, O and N atoms. The
hydrogen bonds are generally much weaker than covalent bonds or other polar bonds, but much stronger than the
vander Waals interaction(He et al 2004). For polymer scientists, the hydrogen bond in polymer blends is also an
important issue. The presence of inter-associated hydrogen bonds between the components in a blend can
promote compatibility and also miscibility and has significant effects on the properties of the blends. In fact,
now-a-days the introduction of hydrogen bonds is a routine and effective strategy to achieve the compatibility
and to modify the properties of blends (Wiswanathan&Dadmum 2003,2002). A hydrogen bond is formed if the
hydrogen-donor distance is less than 3.2 Ångstroms and the angle made by covalent bonds to the donor and
acceptor atoms is less than 120 degrees(Hypercube 2002). Figs. 1-3 Show the geometrical optimized structures
with the presence of hydrogen bonding between mAA and Glu.
3.2Binding energy
The binding energy of each complex was calculated using the following formula:
∆E = Ecomplex – (EGlu. + EmAA)
Here, Ecomplex, EGlu., EmAA represent total energies of the Glu.-mAA complex, the individual Glu. and mAA
molecules, respectively. The computed AM1and PM3 binding energies are presented in Table 1. The negative
energies imply a favorable interaction between the two polymers. Also, binding energies show an increasing
trend with increasing polymer length for most complexes. Thus ,one can conclude that the interactions between
the two polymers are energetically favorable. On the other hand, as the binding energies increase with the
polymer length, the interaction between the polymers increases with increasing polymer length.
3.3Vibrational frequency analysis
The vibrational frequencies were calculated by using the AM1 and PM3 methods for the 1:1, 1:2 and 1:3
(Glu:mAA) complexes. The computed carbonyl C=O grup frequencies of pure mAA, hydroxyl OH
group frequencies of pure Glu. and the corresponding frequencies for the complexes are given in Tables 2 and 3.
Both systems exhibit a decrease in the carbonyl and hydroxyl bond stretching frequencies in the complex as
compared to the corresponding frequencies in mAA and Glu. This clearly indicates a specific interaction between
the carbonyl group of mAA and the hydroxyl group of Glu. It can also be seen that the PM3 method
overestimates the decrease in the frequencies as compared with the AM1 method.
4.Conclusion
The semiemprical AM1 (Austin Model 1) and PM3 (Parameterized Austin Model 3) methods are very useful to
understand the interaction in starch/Poly(acrylic acid) blend. The geometrically optimized structures of all
Chemistry and Materials Research www.iiste.org
ISSN 2224- 3224 (Print) ISSN 2225- 0956 (Online)
Vol.3 No.7, 2013
102
complexes showed the formation of hydrogen bonding between glucose in starch and acrylic acid in poly(acrylic
acid). Also,the vibration frequency for C=O and O-H groups was reduced in complexes than that in acrylic acid
and glucose. Theoretical calculation from binding energy showed that the blend of the complexes has good
compatibility between two components .
References
Sionkowska A.(2011),"
Progress in Polymer Science"
36, 1254-1276.
Tang X. and Alavi S. (2011),"
Carbohydrate Polymers "85, 7–16.
Westhoff R.P., Otey F.H. and Russell C.R. (1974), "
Eng Chem Prod Res Dev "13, 123.
Griffin G.J.L.(1974)," Adv Chem Ser "134, 159.
Otey F.H., Westhoff R.P. Doane W.M.(1987), Ind Eng Chem Res 26, 1659.
Fanta G.F., Swanson C.F.and Shogren R.L.(1992),"
J Appl Polym Sci " 44, 2037.
George E.R., Sulliva T.M. and Park E.H.(1994),"
Polym Eng Sci "34,17.
Otey F. H., Westhoff, R.P.and Russell C.R.(1977),"
Ind. Eng. Chem. Prod. Res"16,305.
Otey F. H., Westhoff , R.P. and Doan W.M.(1980),"
Ind. Eng Chem . Prod. Res. Dev. 19(4)592.
Leja K. and Lewandowic G (2010),"
Polish of Environ. Stud." 19(2), 255-266.
Shujun W., JiugaoY. And Jinglin Y (2006), "J Polym Environm." 14, 1.
Yin Q. Dong A., Wang J. and Yin Y. (2008),"
Polym. Compos". 29,745–749.
Jasberg B, Swanso C., Nelsen T and Doane W(1992)"
J. Polym. Mater", 9, 153.
Fanta,G.F., Swanson, W.M.and Doane, J.(1990), Appl. Polym. Sci., 40, 811.
Villart M.A., Thomas E.L and Armstron R.T.(1995),Polymer, 36, 1869.
Joshi S.S.and Mebel A.M.(2010), "
Polymer",48 , 3893-3901.
Saleh,B.A., Saki T.A. and Al-Mowali A.H. (2009) ,The 8th
Conference in Polymeri ,Petrochemical and Manure
Technologies , 22-23 November, Basrah, Iraq.
Sin L.T ,. Rahman W.A. , Rahmat A.R., and Samad A.A.(2010),"
Polymer "51, 1206–1211.
HeY., Zhu B. and InoueY.(2004) "
Prog. Polym. Sci." 29, 1021–1051.
Viswanathan S., DadmunM.D.(2003) ,Macromolecules 36, 3196–3205.
Viswanathan S.and Dadmun M.D.(2002),"
Macromolecules "35, 5049–5060.
Hypercube. HyperChem®
Release 7 for Windows®
. United States: Hypercube;2002, chapter 2.
A B
Fig. 1. Geometrically optimized structures of hydrogen bond Glu–1mAA at (A) AM1 and (B)
PM3.
Chemistry and Materials Research www.iiste.org
ISSN 2224- 3224 (Print) ISSN 2225- 0956 (Online)
Vol.3 No.7, 2013
103
A B
Fig. 2. Geometrically optimized structures of hydrogen bond Glu–2mAA at (A) AM1 and (B)
PM3.
A B
Fig. 3. Geometrically optimized structures of hydrogen bond Glu–3mAA at (A) AM1 and (B)
PM3.
Chemistry and Materials Research www.iiste.org
ISSN 2224- 3224 (Print) ISSN 2225- 0956 (Online)
Vol.3 No.7, 2013
104
Table 1 Binding energies ∆E (kJ/mol) and hydrogen bond HB distance (Å)at AM1and PM3
of the 1Glu:1mAA, 1Glu:2mAA and 1Glu:3mAA complexes
Complex
es
1Glu:1mAA 1Glu:2mAA 1Glu:3mAA
Model ∆E HB
distance
∆E HB
distance
∆E HB
dista
nce
AM1 -3.67 2.13 -4.53 2.23 -4.26 2.34
PM3 -1.88 1.8 -1.05 2.75 -4.53 1.82
Table 2 Vibrational frequencies(cm-1
) of the carbonyl C=O groups at AM1 and PM3 of the
1Glu:1mAA, 1Glu:2mAA and 1Glu:3mAA complexes.
Complexes
AM1 PM3
H bond V.F. H bond V.F.
1Glu:1mAA with
without
2074.83
2074.93
with
without
2128.13
2128.22
1Glu:2mAA with
without
2077.06
2080.32
with
without
1971.8
1972.31
1Glu:3mAA with
without
2066.25
2066.93
with
without
2128.26
2129.1
H Bond=Hydrogen bond; V.F.= Vibrational frequency.
Chemistry and Materials Research www.iiste.org
ISSN 2224- 3224 (Print) ISSN 2225- 0956 (Online)
Vol.3 No.7, 2013
105
Table 3 Vibrational frequencies(cm-1
) of the hydroxyl OH groups at AM1 and PM3 of the
1Glu:1mAA, 1Glu:2mAA and 1Glu:3mAA complexes.
Complexes
AM1 PM3
H bond V.F. H bond V.F.
1Glu:1mAA with
without
3461.01
3461.76
with
without
3527.86
3552.48
1Glu:2mAA with
without
3454.03
3460.45
with
without
3867.25
3871.16
1Glu:3mAA with
without
3426.12
3443.12
with
without
3530.21
3566.05
H Bond=Hydrogen bond; V.F.= Vibrational frequency.
This academic article was published by The International Institute for Science,
Technology and Education (IISTE). The IISTE is a pioneer in the Open Access
Publishing service based in the U.S. and Europe. The aim of the institute is
Accelerating Global Knowledge Sharing.
More information about the publisher can be found in the IISTE’s homepage:
http://www.iiste.org
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collaborating with academic institutions around the world. There’s no deadline for
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Molecular modeling simulation study of interactions in

  • 1. Chemistry and Materials Research www.iiste.org ISSN 2224- 3224 (Print) ISSN 2225- 0956 (Online) Vol.3 No.7, 2013 100 Molecular Modeling Simulation Study of Interactions in Starch/Poly(acrylic acid) Blend Ali H. Al_Mowali* ,Zaki N. Kadhum, Tahseen A. Saki and Ali J. Hameed Chemistry Department, College of Science, University of Basrah, Basrah, Iraq * E-mail of the corresponding auther: ali_almoali@yahoo.com Abstract In this work we have studied the nature of interactions between starch and poly(acrylic acid) by using semi- empirical AM1 and PM3 methods. Theoretical computations involved the determination of optimal geometries, binding energies and vibrational frequencies of the blended polymers. Calculations are performed for four pairs of complexes of glucose (Glu) in starch and acrylic acid (mAA) in poly(acrylic acid) PAA. Based on results of calculation, the binding energies show negative values, which indicate that the interactions of glucose and acrylic acid are favorable at the lower energy. This means that the interactions of starch and PAA are stable. Vibrational frequency analysis of hydroxyl OH and carboxyl C=O groups of the 1Glu–1mAA, 1Glu–2mAA and 1Glu– 3mAA complexes with single hydrogen bond showed that the stretching of these groups shifts to a lower wave number due to the formation of hydrogen bonds. Keywords:Polymer blends, AM1, PM3. 1.Introduction Blending of chemically different polymers is an important tool in industrial production of tailoring products with optimized material properties(Sionkowska 2001). Another route, polymer blending is a simple yet attractive method to provide combined physical and mechanical properties. Blends of synthetic polymers and starches have been extensively studied since these blends can be prepared so they are biodegradable. Among all natural biopolymers, starch has been considered as one of the most promising materials because of its easy availability, biodegradability and lower cost. Starch is the major form of stored carbohydrate in plants such as corn, wheat,rice and potatoes. Starch is composed of a mixture of two polymers of glucose – linear amylose and a highly branched amylopectin(Tang&Alavi 2011). To impart biodegradability to polymers, starch has been blended with common polymers such as poly(vinyl chloride)(Westhoff et al 1974), polyethylene,(Griffin1974&Otey et al 1987) alpoly(ethylene-co-acrylic acid),(Fanta et al 1992)and poly(ethylene-co-vinyl alcohol)(George et al 1994). Biodegradable films from starch and ethylene–acrylic acid (EAA) copolymers with the aim of improving their water resistance and preventing them from becoming brittle with age were studied(Otey et al 1977). Compatible mixtures containing up to 90% starch and EAA copolymer were milled or casted from aqueous dispersions into flexible, non-supported films without the aid of a conventional plasticizer. These films were water resistant and appeared to have acceptable physical properties for a variety of packaging and agricultural mulch applications. The added EAA may be associated with the starch molecules enough to hold them in their expanded, flexible states. As the amount of EAA is decreased, this association can be partially disrupted, especially with age or in the presence of a solvent such as water. A technique for blending gelatinized starch and poly(ethylene-co-acrylic acid) (EAA) to produce flexible blown films that contain high levels of starch was studied (Otey et al 1980). Starch is a highly hydrophilic macromolecule. It is often used as the degradable additive in the preparation of biodegradable polyethylene film. Polyethylene is resistant to microbial breakdown(Leja et al 2010). The great difference between starch and polyethylene in their properties results in poor compatibility of starch/polyethylene blends (Shujun et al 2006). The use of compatibilizer containing groups capable of hydrogen bonding with starch hydroxyls increases the compatibility in starch-polyethylene blends. Ethylene/acrylic acid copolymer (EAA) is such an example (Yin et al 2008,Jasberg et al 1992, Fanta et al 1990&Villart et al 1995). The interactions between starch (amylose portion) and poly-propylene carbonate by employing DFT based B3LYP and semi-empirical AM1 and PM3 methods on five complexes were studied (Joshi&Mebel 2010). Meanwhile, the use of semi-empirical AM1 method to study the interaction on three pairs of starch and poly vinyl alcohol was carried out(Saleh et al 2009). Recently, semi-empirical AM1 (Austin Model 1) and PM3 (Parameterized Austin Model 3) methods to study the hydrogen bonding interactions between poly vinyl alcohol and starch were employed(Sin et al 2010). In this study, molecular modeling simulations have been studied to understand the compatibility and interactions between starch and poly(acrylic acid) . In addition to these computational methods, the interactions between these two polymers have also been evaluated using vibrational frequency analysis. In this work,we have investigated theoretically four pairs of complexes of glucose (Glu) in starch and acrylic
  • 2. Chemistry and Materials Research www.iiste.org ISSN 2224- 3224 (Print) ISSN 2225- 0956 (Online) Vol.3 No.7, 2013 101 acid (mAA) in poly(acrylic acid) PAA by using the semi-empirical AM1 and PM3 methods. We aimed to evaluate the interaction between glucose (Glu) in starch and acrylic acid (mAA) in poly(acrylic acid) PAA through the formation of hydrogen bonds between them. 2. Theoretical Methods Geometrical optimizations were carried out by using the AM1 & PM3 semi-empirical methods as implemented in the Hyperchem 8 package. All structures were fully optimized at the Restricted Hartree – Fock (RHF). Geometrical optimizations were carried out by using a conjugate gradient method (Polka – Ribiere lgorithm) .The self-consistent-field SCF convergence was set to 0.1 Kcal mol-1 in the calculations. Also, Hyperchem was used to generate binding energy and vibrational frequency analysis to produce infrared absorption of the complexes. Three pairs of complexes consisting of increasing numbers of glucose (Glu.) and PAA monomers (mAA) have been studied. The geometrically optimized structures for all the three complexes at different levels of theory are represented in Figs.1-3. 3. Results and Discusion 3.1 Hydrogen bonds The important factor that determines the properties of a blend is the compatibility/miscibility of polymer pairs. The chemical structures of the polymeric components have a significant effect on the interactions between the polymers resulting in miscibility of the polymer blend. For starch and PAA blends,both the Carbonyl functional groups of AA have the potential to interact with the hydroxyl groups of Starch via hydrogen bonding. In general, the hydrogen bond is a directed, attractive interaction between electron-deficient hydrogen and a region of high electron density. Most frequently, a hydrogen bond is of the X–H/Y type, where X and Y are electronegative elements and Y possesses one or more lone electron pairs. In most cases, X and Y are F, O and N atoms. The hydrogen bonds are generally much weaker than covalent bonds or other polar bonds, but much stronger than the vander Waals interaction(He et al 2004). For polymer scientists, the hydrogen bond in polymer blends is also an important issue. The presence of inter-associated hydrogen bonds between the components in a blend can promote compatibility and also miscibility and has significant effects on the properties of the blends. In fact, now-a-days the introduction of hydrogen bonds is a routine and effective strategy to achieve the compatibility and to modify the properties of blends (Wiswanathan&Dadmum 2003,2002). A hydrogen bond is formed if the hydrogen-donor distance is less than 3.2 Ångstroms and the angle made by covalent bonds to the donor and acceptor atoms is less than 120 degrees(Hypercube 2002). Figs. 1-3 Show the geometrical optimized structures with the presence of hydrogen bonding between mAA and Glu. 3.2Binding energy The binding energy of each complex was calculated using the following formula: ∆E = Ecomplex – (EGlu. + EmAA) Here, Ecomplex, EGlu., EmAA represent total energies of the Glu.-mAA complex, the individual Glu. and mAA molecules, respectively. The computed AM1and PM3 binding energies are presented in Table 1. The negative energies imply a favorable interaction between the two polymers. Also, binding energies show an increasing trend with increasing polymer length for most complexes. Thus ,one can conclude that the interactions between the two polymers are energetically favorable. On the other hand, as the binding energies increase with the polymer length, the interaction between the polymers increases with increasing polymer length. 3.3Vibrational frequency analysis The vibrational frequencies were calculated by using the AM1 and PM3 methods for the 1:1, 1:2 and 1:3 (Glu:mAA) complexes. The computed carbonyl C=O grup frequencies of pure mAA, hydroxyl OH group frequencies of pure Glu. and the corresponding frequencies for the complexes are given in Tables 2 and 3. Both systems exhibit a decrease in the carbonyl and hydroxyl bond stretching frequencies in the complex as compared to the corresponding frequencies in mAA and Glu. This clearly indicates a specific interaction between the carbonyl group of mAA and the hydroxyl group of Glu. It can also be seen that the PM3 method overestimates the decrease in the frequencies as compared with the AM1 method. 4.Conclusion The semiemprical AM1 (Austin Model 1) and PM3 (Parameterized Austin Model 3) methods are very useful to understand the interaction in starch/Poly(acrylic acid) blend. The geometrically optimized structures of all
  • 3. Chemistry and Materials Research www.iiste.org ISSN 2224- 3224 (Print) ISSN 2225- 0956 (Online) Vol.3 No.7, 2013 102 complexes showed the formation of hydrogen bonding between glucose in starch and acrylic acid in poly(acrylic acid). Also,the vibration frequency for C=O and O-H groups was reduced in complexes than that in acrylic acid and glucose. Theoretical calculation from binding energy showed that the blend of the complexes has good compatibility between two components . References Sionkowska A.(2011)," Progress in Polymer Science" 36, 1254-1276. Tang X. and Alavi S. (2011)," Carbohydrate Polymers "85, 7–16. Westhoff R.P., Otey F.H. and Russell C.R. (1974), " Eng Chem Prod Res Dev "13, 123. Griffin G.J.L.(1974)," Adv Chem Ser "134, 159. Otey F.H., Westhoff R.P. Doane W.M.(1987), Ind Eng Chem Res 26, 1659. Fanta G.F., Swanson C.F.and Shogren R.L.(1992)," J Appl Polym Sci " 44, 2037. George E.R., Sulliva T.M. and Park E.H.(1994)," Polym Eng Sci "34,17. Otey F. H., Westhoff, R.P.and Russell C.R.(1977)," Ind. Eng. Chem. Prod. Res"16,305. Otey F. H., Westhoff , R.P. and Doan W.M.(1980)," Ind. Eng Chem . Prod. Res. Dev. 19(4)592. Leja K. and Lewandowic G (2010)," Polish of Environ. Stud." 19(2), 255-266. Shujun W., JiugaoY. And Jinglin Y (2006), "J Polym Environm." 14, 1. Yin Q. Dong A., Wang J. and Yin Y. (2008)," Polym. Compos". 29,745–749. Jasberg B, Swanso C., Nelsen T and Doane W(1992)" J. Polym. Mater", 9, 153. Fanta,G.F., Swanson, W.M.and Doane, J.(1990), Appl. Polym. Sci., 40, 811. Villart M.A., Thomas E.L and Armstron R.T.(1995),Polymer, 36, 1869. Joshi S.S.and Mebel A.M.(2010), " Polymer",48 , 3893-3901. Saleh,B.A., Saki T.A. and Al-Mowali A.H. (2009) ,The 8th Conference in Polymeri ,Petrochemical and Manure Technologies , 22-23 November, Basrah, Iraq. Sin L.T ,. Rahman W.A. , Rahmat A.R., and Samad A.A.(2010)," Polymer "51, 1206–1211. HeY., Zhu B. and InoueY.(2004) " Prog. Polym. Sci." 29, 1021–1051. Viswanathan S., DadmunM.D.(2003) ,Macromolecules 36, 3196–3205. Viswanathan S.and Dadmun M.D.(2002)," Macromolecules "35, 5049–5060. Hypercube. HyperChem® Release 7 for Windows® . United States: Hypercube;2002, chapter 2. A B Fig. 1. Geometrically optimized structures of hydrogen bond Glu–1mAA at (A) AM1 and (B) PM3.
  • 4. Chemistry and Materials Research www.iiste.org ISSN 2224- 3224 (Print) ISSN 2225- 0956 (Online) Vol.3 No.7, 2013 103 A B Fig. 2. Geometrically optimized structures of hydrogen bond Glu–2mAA at (A) AM1 and (B) PM3. A B Fig. 3. Geometrically optimized structures of hydrogen bond Glu–3mAA at (A) AM1 and (B) PM3.
  • 5. Chemistry and Materials Research www.iiste.org ISSN 2224- 3224 (Print) ISSN 2225- 0956 (Online) Vol.3 No.7, 2013 104 Table 1 Binding energies ∆E (kJ/mol) and hydrogen bond HB distance (Å)at AM1and PM3 of the 1Glu:1mAA, 1Glu:2mAA and 1Glu:3mAA complexes Complex es 1Glu:1mAA 1Glu:2mAA 1Glu:3mAA Model ∆E HB distance ∆E HB distance ∆E HB dista nce AM1 -3.67 2.13 -4.53 2.23 -4.26 2.34 PM3 -1.88 1.8 -1.05 2.75 -4.53 1.82 Table 2 Vibrational frequencies(cm-1 ) of the carbonyl C=O groups at AM1 and PM3 of the 1Glu:1mAA, 1Glu:2mAA and 1Glu:3mAA complexes. Complexes AM1 PM3 H bond V.F. H bond V.F. 1Glu:1mAA with without 2074.83 2074.93 with without 2128.13 2128.22 1Glu:2mAA with without 2077.06 2080.32 with without 1971.8 1972.31 1Glu:3mAA with without 2066.25 2066.93 with without 2128.26 2129.1 H Bond=Hydrogen bond; V.F.= Vibrational frequency.
  • 6. Chemistry and Materials Research www.iiste.org ISSN 2224- 3224 (Print) ISSN 2225- 0956 (Online) Vol.3 No.7, 2013 105 Table 3 Vibrational frequencies(cm-1 ) of the hydroxyl OH groups at AM1 and PM3 of the 1Glu:1mAA, 1Glu:2mAA and 1Glu:3mAA complexes. Complexes AM1 PM3 H bond V.F. H bond V.F. 1Glu:1mAA with without 3461.01 3461.76 with without 3527.86 3552.48 1Glu:2mAA with without 3454.03 3460.45 with without 3867.25 3871.16 1Glu:3mAA with without 3426.12 3443.12 with without 3530.21 3566.05 H Bond=Hydrogen bond; V.F.= Vibrational frequency.
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