You forgot to label some genome evolution data where you measured the number of
synonymous and nonsynonymous changes in the eeoB gene (a made up gene) in related insect
species that diverged roughly every 10 million years (My) over 200 My . Harn'e the data.
Complete the following statement so that it reads correctly: "Column A is the data. Column B is
the data and Column C is the data, obviously because the sites begin to around l'm so smart."
Hint: When you plot the data in your spreadsheet, put the time data (\#\# My) on the x-axis for
each of the other two data columns. Be prepared to share your plotted data and your answers, so
pick one person to plot the data and present it. MATERIALS -Microsoft Excel or Google Sheets
(or some kind of graphing software) You are a molecular geneticist attempting to understand fish
evolution. Specifically, you're looking at zebrafish (ZF) and common bream (CB) evolution
using ten genes (gene1-10) from their respective genomes. To accomplish this you will need to
perform a relative rates test, as described in class. As an outgroup for comparison, you will use
the dolphin. Below l've provided the info needed to perform a relative rates test. The cutoff for
significant differences is 1% . Here's the data: Using genome synteny plots to infer relatedness
between taxa The synteny plots below reflect both gene content and genomic structure (i.e.
location and orientation gene content) of three bacterial species: SoET, SoBr and SoEL. Use the
synteny data to identify which phylogeny (ignore branch lengths) below is accurate and correctly
complete the following passage: "Between SoBr and SoEL there are several -type
rearrangements, unlike between SoET and SoEL, which appears to have only of those kinds of
rearrangements. SoBr still shares many with SoEL. Based on the synteny plots, the phylogeny is
likely the most accurate and SoET and SoEL are more related to one another than either are to
SoBr ..
What's in a name? Better vocabularies = better bioinformatics?Keith Bradnam
Most of the pain and suffering that occurs in bioinformatics happens when database identifier 'A' in file 1, doesn't quite match database identifier 'B' in file 2...even when they are supposed to be the same identifier.
Things don't always match up for a number of reasons, most of which *should* be under our control. This talk covers a few points relating to this and briefly discusses how we should all be using curated ontologies to describe our data.
What's in a name? Better vocabularies = better bioinformatics?Keith Bradnam
Most of the pain and suffering that occurs in bioinformatics happens when database identifier 'A' in file 1, doesn't quite match database identifier 'B' in file 2...even when they are supposed to be the same identifier.
Things don't always match up for a number of reasons, most of which *should* be under our control. This talk covers a few points relating to this and briefly discusses how we should all be using curated ontologies to describe our data.
13- Many mammals exhibit variations in coat color- For example- weasel.docxBorisJX7Mackaym
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.
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.
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You forgot to label some genome evolution data where you measured the.pdf
1. You forgot to label some genome evolution data where you measured the number of
synonymous and nonsynonymous changes in the eeoB gene (a made up gene) in related insect
species that diverged roughly every 10 million years (My) over 200 My . Harn'e the data.
Complete the following statement so that it reads correctly: "Column A is the data. Column B is
the data and Column C is the data, obviously because the sites begin to around l'm so smart."
Hint: When you plot the data in your spreadsheet, put the time data (## My) on the x-axis for
each of the other two data columns. Be prepared to share your plotted data and your answers, so
pick one person to plot the data and present it. MATERIALS -Microsoft Excel or Google Sheets
(or some kind of graphing software) You are a molecular geneticist attempting to understand fish
evolution. Specifically, you're looking at zebrafish (ZF) and common bream (CB) evolution
using ten genes (gene1-10) from their respective genomes. To accomplish this you will need to
perform a relative rates test, as described in class. As an outgroup for comparison, you will use
the dolphin. Below l've provided the info needed to perform a relative rates test. The cutoff for
significant differences is 1% . Here's the data: Using genome synteny plots to infer relatedness
between taxa The synteny plots below reflect both gene content and genomic structure (i.e.
location and orientation gene content) of three bacterial species: SoET, SoBr and SoEL. Use the
synteny data to identify which phylogeny (ignore branch lengths) below is accurate and correctly
complete the following passage: "Between SoBr and SoEL there are several -type
rearrangements, unlike between SoET and SoEL, which appears to have only of those kinds of
rearrangements. SoBr still shares many with SoEL. Based on the synteny plots, the phylogeny is
likely the most accurate and SoET and SoEL are more related to one another than either are to
SoBr .
