The researchers analyzed DNA from six different vegan meat and dairy substitutes using PCR and sequencing to check the accuracy of ingredient labels. All samples amplified with plant primers showed plant DNA, though two matched non-listed plant species. The mammalian primer produced plant DNA sequences from two samples, inconsistent with its intended use. Overall, the results supported accurate labeling for four products but found evidence against the labels of vegan hotdogs and cheese dip.
Transfer of Potential pseudomonas stutzeri genes ROB1323
In this research of saxitoxin bacterial production bioinformatics will be utilized to identify sxt coding genes within pseudomonas stutzeri strain A1501. PCR will then be employed in the isolation of sxt genes from pseudomonas stutzeri. The isolated genes will be transformed into Ecoli cultures.
Dr. Ying Fang - Emerging swine disease diagnostics and characterization: conn...John Blue
Emerging swine disease diagnostics and characterization: connecting basic research to real-world applications - Dr. Ying Fang, Kansas State University, from the 2017 North American PRRS/National Swine Improvement Federation Joint Meeting, December 1‐3, 2017, Chicago, Illinois, USA.
More presentations at http://www.swinecast.com/2017-north-american-prrs-nsif-joint-meeting
Applications of rDNA technology
Altering the genome of an organism by introducing genes of interest is known as gene manipulation or recombinant DNA technology.
AIDS test: Has become simple & rapid
Diagnosis of molecular diseases: sickle cell anaemia thalassaemia, familial hyper cholesterolaemia, cystic fibrosis
Prenatal diagnosis: DNA from cells collected from amniotic fluid, chorionic villi
Gene Therapy: This is achieved by cloning a gene into a vector that will readily be taken up & incorporated into genome of a host cell. ADA deficiency (Adenosine deaminase deficiency) has been successfully treated
Application in Agriculture: Genetically engineered plants are developed to resist draught & diseases. Good quality of food & increased yield of crops is also possible.
Industrial Application: Enzymes---use to produce sugars, cheese, detergents. Protein products---used as food additives, increases nutritive value, besides imparting flavour.
Genetically engineered bacteria are employed to synthesize certain vital life saving drugs,hormones,and antibiotics eg.,antiviral /anticancer interferons: human growth hormones somatostatin etc.,
Application in forensic medicine: The restriction analysis pattern of DNA of one individual will be very specific(DNA fingerprinting, but the pattern will be different from person to person. Helps to identify criminals & to settle disputes of parenthood of children.
Transgenesis: Gene replacement therapy will not pass on to offspring. Therefore genes are transferred into fertilized ovum which will be found in somatic as well as germ cells & passed on to the successive generations.
A power point presentation on the biology topic of "Recombinant DNA Technology" based on class 12 CBSE boards practical topics .It's contain a basic description and a possible explanation for a better understanding.
Transfer of Potential pseudomonas stutzeri genes ROB1323
In this research of saxitoxin bacterial production bioinformatics will be utilized to identify sxt coding genes within pseudomonas stutzeri strain A1501. PCR will then be employed in the isolation of sxt genes from pseudomonas stutzeri. The isolated genes will be transformed into Ecoli cultures.
Dr. Ying Fang - Emerging swine disease diagnostics and characterization: conn...John Blue
Emerging swine disease diagnostics and characterization: connecting basic research to real-world applications - Dr. Ying Fang, Kansas State University, from the 2017 North American PRRS/National Swine Improvement Federation Joint Meeting, December 1‐3, 2017, Chicago, Illinois, USA.
More presentations at http://www.swinecast.com/2017-north-american-prrs-nsif-joint-meeting
Applications of rDNA technology
Altering the genome of an organism by introducing genes of interest is known as gene manipulation or recombinant DNA technology.
AIDS test: Has become simple & rapid
Diagnosis of molecular diseases: sickle cell anaemia thalassaemia, familial hyper cholesterolaemia, cystic fibrosis
Prenatal diagnosis: DNA from cells collected from amniotic fluid, chorionic villi
Gene Therapy: This is achieved by cloning a gene into a vector that will readily be taken up & incorporated into genome of a host cell. ADA deficiency (Adenosine deaminase deficiency) has been successfully treated
Application in Agriculture: Genetically engineered plants are developed to resist draught & diseases. Good quality of food & increased yield of crops is also possible.
Industrial Application: Enzymes---use to produce sugars, cheese, detergents. Protein products---used as food additives, increases nutritive value, besides imparting flavour.
Genetically engineered bacteria are employed to synthesize certain vital life saving drugs,hormones,and antibiotics eg.,antiviral /anticancer interferons: human growth hormones somatostatin etc.,
Application in forensic medicine: The restriction analysis pattern of DNA of one individual will be very specific(DNA fingerprinting, but the pattern will be different from person to person. Helps to identify criminals & to settle disputes of parenthood of children.
Transgenesis: Gene replacement therapy will not pass on to offspring. Therefore genes are transferred into fertilized ovum which will be found in somatic as well as germ cells & passed on to the successive generations.
A power point presentation on the biology topic of "Recombinant DNA Technology" based on class 12 CBSE boards practical topics .It's contain a basic description and a possible explanation for a better understanding.
Mitochondrial ND-1 gene-specific primer polymerase chain reaction to determin...UniversitasGadjahMada
A specificity method to detect mice meat contamination in beef meatballs using specific primer-polymerase chain reaction (PCR) technique has been developed. The primer ND1-P1 primers were designed using primer-BLAST software using mtDNA of mice as a template. The Primer ND1-P1 forward (5’-CGGCATCCTACAACCATTTGC-3’) and reverse (5’-CGGCTCGTAAAGC-TCCGAA-3’) was able to amplify a 294 bp fragment of ND1 gene in mice mtDNA. The primers have been proven precise with only amplify the target fragment in mice meatball but not in another meatball including beef meatball, chicken meatball, pork meatball, horse meatball, and goat meatball. The present of mice meat in meatballs can be detected at a concentration as low as 5% (w/w). The ND1-P1 primer is potentially used as a specific marker for detection of mice meat in the meat products.
Added Value of Open data sharing using examples from GenomeTrakrExternalEvents
http://www.fao.org/about/meetings/wgs-on-food-safety-management/en/
Added Value of Open data sharing using examples from GenomeTrakr. Presentation from the Technical Meeting on the impact of Whole Genome Sequencing (WGS) on food safety management and GMI-9, 23-25 May 2016, Rome, Italy.
Classical identification approaches are not useful in many cases, in particular with processed food. DNA barcoding provides molecular identification which can go beyond the species level, allowing the identification of local varieties and identifying the origin of a certain food product.
Bifidobacterium strain that helps reduce body fatBiopolis_SL
Bifidobacterium animalis subsp. lactis strain CECT 8145 is able to reduce body fat content and improve metabolic syndrome biomarkers. Here, we report the draft genome sequence of this strain, which may provide insights into its safety status and functional role.
1. Abstract: Are vegan-labelled foods truly animal-free? Previous research has shown that some processed, packaged vegan foods have contained animal products. We investigated six different vegan meat and dairy
substitutes. We isolated DNA from the foods, and then used Polymerase Chain Reaction (PCR) to amplify a specific target gene. We used three primers on each sample: plant, fish, and mammal/insect. The resulting
gene copies were sequenced and then the sequence data was analyzed using bioinformatic techniques.
Acknowledgements: We would like to acknowledge Lansing Community College for funding the project, GENEWIZ, Inc. for providing DNA sequence
data, and the iPlant Collaborative and NCBI for providing bioinformatics tools. We would also like to acknowledge Cold Spring Harbor DNA Learning
Lab for experimental protocols.
DNA Analysis: Are Packaged Vegan Foods Really AnimalDNA Analysis: Are Packaged Vegan Foods Really Animal
Free?Free?
Shannon Best, Elise DesJardins, Ender Dettlaff, Sarah Hancock, Lurah Peterson, Eric Robins and Melinda Wilson.
Molecular Biotechnology Program, Lansing Community College, Lansing, MITGTTGGATTTAAAGCTGGTGTTAAGGATTATAAATTGACTTATTACACCCCGGAGTATGAAACCAAGGATACTGATATCTTGGCAGCATTCCGAGTAACTCCTCAGCCCGGGGTTCCGCCCGAAGAAGCAGGGGCTGCAGTAGCTGCCGAATCTTCTACTGGTACATGGACAACTGTTTGGACTGATGGACTTACCAGTCTTGATCGTTACAAAGGGCGATGCTATCACATCGAGCCCGTTGTTGGG
AGGAAAATCAATTTATCGCTTATGTAGCTTATCCATTAGACCTATTTGAAGAGGGTTCTGTTACTAACATGTTTACTTCCATTGTGGGTAACGTATTTGGTTTCAAAGCCCTACGCGCTCTACGTCTGGAGGATCTGCGAATTCCCCCTACTTATTCAAAAACTTTCCAAGGTCCGCCTCATGGTATCCAAGTTGAAAGGGATAAGTTGAACAAGTACGGCCGTCCTTTTTTGGGATGTACTATTAAACCA
AATTGGGAT
PlantDNABarcode
DNAIdentified
Sequence Variation
Consensus
Wheat
Cauliflower, Cabbage
Japanese Laurel
Soy
Pea
Pea
Plant Primer Mammal Primer Fish Primer
Conclusions
The purpose of this project was to determine if the
ingredients of vegan products are consistent with the
labeling. To do this we looked at DNA barcodes, gel
electrophoresis, and chromatogram data. Bands on all the
gels indicated that amplification of the DNA occurred with
all primers. The electrophoresis gel results for the plant
primer supported our expectations, that plant material is in
processed vegan foods. Although the fish and
mammal/insect primer gels indicated evidence of
mammalian/insect and fish DNA, no DNA sequence was
found to match mammalian/insect or fish DNA sequence.
Interestingly, the primers should have only amplified
mammal/insect and fish DNA during PCR, but the DNA
“barcoded” as plant species. The vegan bologna, Mozzarella,
hamburger, and chicken tenders all showed evidence of
having ingredients that are consistent with package labeling.
The vegan hotdogs and cheese dip showed evidence of
ingredients not on the label. In conclusion, our results
indicate that there was plant DNA but no mammal/insect or
fish DNA found in our vegan samples.
References
Cold Spring Harbor Laboratory. (2013). About DNA Subway. Retrieved (5 April 2016) from http://dnasubway.iplantcollaborative.org/about/
Lev. (2014, August 24). Common Food Product Certifications and Labeling Terms. Retrieved (5 April 2016) from https://www.recipal.com/blogs/72-
common-food-product-certifications-and-labeling-terms
Cold Spring Harbor Laboratory. (n.d) DNA Barcoding 101. Retrieved from http://www.dnabarcoding101.org/files/using-dna-barcodes.pdf
Rhoades, H. (2016, March 24). Growing Mustards: How To Plant Mustard Greens. Retrieved (14 April 2016) from
http://www.gardeningknowhow.com/edible/vegetables/greens/growing-mustard-greens.htm
CBOL (2010). Barcode of Life - Identifying Species with DNA Barcoding. Retrieved (5 April 2016) from
http://www.barcodeoflife.org/content/about/what-dna-barcoding
4
2
1
1
3
Results
DNA was analyzed from 18 PCR amplified vegan samples. All 6 samples
amplified with plant primers showed plant DNA. However, two of the
plant sample database search results matched plant species that were
not consistent with the product labels: hotdog DNA matched cabbage,
and chia cheese DNA matched a non-edible plant.
Using the mammalian primer, PCR amplified DNA sequence showed
matches to plant genes in vegan bologna and vegan mozzarella.
Although the results were consistent with the label, they were
inconsistent with using the mammalian primer.
Chromatogram of vegan mozzarella DNA sequence. This data shows distinct peaks which indicates DNA from a single species. Chromatogram of vegan bologna DNA sequence. This data shows multiple overlapping peaks which indicates DNA
from a mixture of species resulting in an unreliable barcode.
Plant
Primer
Fish
Primer
Mammal
& Insect
Primer
1
2
3
4
5
6
Agarose Gel Electrophoresis
Sample Name
Probe
Primer Species
E. Score Mismatch
Query
Length
% Identity
DNA
Purity QC
Plant
Triticum aestivum -
Wheat
0 0 1146 100%
Mammal Glycine max- Soy 0 21 556 96%
Fish Pisum saativum -Pea 1.00E-143 95 536 82%
Plant Glycine max - Soy 0 0 556 99%
Mammal
Brassica juncea -
Mustard greens
0 11 411 97%
Fish NR NR NR NR NR
Plant
Brassica oleracea -
Cabbage Family
0 4 1158 99%
Mammal NR NR NR NR NR
Fish
S.marmoratus -Rock
Fish 1.00E-18 7 71 Not Relevent
Plant
Aucuba japonica -
Japanese Laurel
0 29 572 95%
Mammal NR NR NR NR NR
Fish NR NR NR NR NR
Plant Lathyrus - Veiny pea 0 2 572 99%
Mammal NR NR NR NR NR
Fish NR NR NR NR NR
Plant Pisum saativum - Pea 0 2 1132 99%
Mammal NR NR NR NR NR
Fish NR NR NR NR NR
1.Vegan Bologna
2.Vegan
Mozzarella
3.Vegan Hotdogs
1.85
1.88
1.84
1.84
1.68
1.92
5.Vegan
Hamburger
4.Vegan Cheese
Dip
6.Vegan Chik'n
Tenders
Table 1: Vegan Sample Sequence Data Analysis Summary Using DNA Subway and GenBank Bioinformatic Tools.