TextEvolution: Modeling DNA
replication mechanisms with text
Science Hack Day SF 2013
David Harris
Mutations and repairs
• Point mutation -> letter substitution
• Insertion mutation -> letter insertion
• Deletion mutation -> letter deletion
• Repair -> spellcheck and replace “broken” words with
best guess at correct word (sometimes you get a favorable
mutation)
Parameters
• Do nothing rate
• Point mutation rate
• Insertion rate
• Deletion rate
• Number of generations
Examples
• From so simple a beginning endless forms most beautiful
and most wonderful have been, and are being, evolved.
• Fro simple beginning endlessness Dost beautiful and Yost
Wonderful been and bing evolved
• Simple beginning endlessness Dost Beautiful Wonderful
beebread evolved
• beginning godlessness Beebread Evolve
Examples
• An American monkey, after getting drunk on brandy,
would never touch it again, and thus is much wiser than
most men.
• Americana monkey after getting drunkenness ditch
against embouchure ooze Chaw most men
• Americana Asterisking drunkenness Chauvinist
Examples
• I have tried lately to read Shakespeare, and found it so
intolerably dull that it nauseated me.
• Haversack laxity raped fun so intolerable deal Cronkite
nauseated me
Examples
• I love fools' experiments. I am always making them.
• lovelinesses allay marring Oh
• lonelinesses Earring
Lessons
• Mutations often kill off species (words)
• Having an insertion or deletion rate too high very rapidly
kills off species (words)
• There are some bizarre words in the English language

Text evolution: Modeling DNA replication mechanisms with text

  • 1.
    TextEvolution: Modeling DNA replicationmechanisms with text Science Hack Day SF 2013 David Harris
  • 2.
    Mutations and repairs •Point mutation -> letter substitution • Insertion mutation -> letter insertion • Deletion mutation -> letter deletion • Repair -> spellcheck and replace “broken” words with best guess at correct word (sometimes you get a favorable mutation)
  • 3.
    Parameters • Do nothingrate • Point mutation rate • Insertion rate • Deletion rate • Number of generations
  • 4.
    Examples • From sosimple a beginning endless forms most beautiful and most wonderful have been, and are being, evolved. • Fro simple beginning endlessness Dost beautiful and Yost Wonderful been and bing evolved • Simple beginning endlessness Dost Beautiful Wonderful beebread evolved • beginning godlessness Beebread Evolve
  • 5.
    Examples • An Americanmonkey, after getting drunk on brandy, would never touch it again, and thus is much wiser than most men. • Americana monkey after getting drunkenness ditch against embouchure ooze Chaw most men • Americana Asterisking drunkenness Chauvinist
  • 6.
    Examples • I havetried lately to read Shakespeare, and found it so intolerably dull that it nauseated me. • Haversack laxity raped fun so intolerable deal Cronkite nauseated me
  • 7.
    Examples • I lovefools' experiments. I am always making them. • lovelinesses allay marring Oh • lonelinesses Earring
  • 8.
    Lessons • Mutations oftenkill off species (words) • Having an insertion or deletion rate too high very rapidly kills off species (words) • There are some bizarre words in the English language