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Procedure for structure analysis
Overview of strategy
What is needed
lattice parameters
space group
equipoint occupation
positional parameters
reflection positions
reflection intensities
Procedure for structure analysis
Overview of strategy
What is needed
lattice parameters
space group
done simultaneously
reflection positions
Procedure for structure analysis
Overview of strategy
What is needed
lattice parameters
space group
done simultaneously
need crystal system for size & shape of UC
some info on symmetry also acquired
reflection positions
Procedure for structure analysis
Overview of strategy
What is needed
lattice parameters
space group
done simultaneously
need crystal system for size & shape of UC
some info on symmetry also acquired
small no. reflections needed for crystal system
and approx. LPs
reflection positions
Procedure for structure analysis
Overview of strategy
What is needed
lattice parameters
space group
done simultaneously
need crystal system for size & shape of UC
some info on symmetry also acquired
small no. reflections needed for crystal system
and approx. LPs large no. for precise LPs
reflection positions
Examples for LP detn
Get a-value for each reflection
Which one is correct? or best?
Examples for LP detn
Depends upon 
Consider effect of expt'l error
on a-values at different s
Braggs' law says error in d
depends on error in sin 
Examples for LP detn
Braggs' law says error in d
depends on error in sin 
d eqn says error in a (cubic)
depends on error in d
d2 = a2/(h2 + k2 + l2)
Thus, error in a depends on
error in sin 
Precise LPs
Best a-value at  = 90°
extrapolate a-values vs. cos2 
Precise LPs
Best a-value at  = 90°
extrapolate a-values vs. cos2 
Precise LPs
Best a-value at  = 90°
extrapolate a-values vs. cos2 
Precise LPs
Another common extrapolation fcn -
Nelson-Riley fcn
Procedure for structure analysis
Overview of strategy
LPs & SG done simultaneously
need crystal system for size & shape of UC
some info on symmetry also acquired
systematic extinctions ––> Bravais lattice
glide planes, screw axes
space group - almost
ex: Imma (centric) ––– Im21a (non-centric)
get correct SG in final structure detn
Techniques for structure detn
1. Gather supplemental info
chemical structure
density = (# formula units/UC x form. wt.)/(No x UC volume)
Techniques for structure detn
1. Gather supplemental info
chemical structure
density = (# formula units/UC x form. wt.)/(No x UC volume)
atom sizes
Techniques for structure detn
1. Gather supplemental info
chemical structure
density = (# formula units/UC x form. wt.)/(No x UC volume)
atom sizes
properties (centric?)
isostructural materials (use databases)
Ex: Al9Co3Ce
do search on LPs
Techniques for structure detn
1. Gather supplemental info
chemical structure
density = (# formula units/UC x form. wt.)/(No x UC volume)
atom sizes
properties (centric?)
isostructural materials (use databases)
Ex: Al9Co3Ce
do search on LPs
Techniques for structure detn
1. Gather supplemental info
chemical structure
density = (# formula units/UC x form. wt.)/(No x UC volume)
atom sizes
properties (centric?)
isostructural materials (use databases)
Ex: Al9Co3Ce
do search on LPs
Ga9Co3Nd
(structure known)
only need to "refine"
Al9Co3Ce structure
Techniques for structure detn
1. Gather supplemental info
chemical structure
density = (# formula units/UC x form. wt.)/(No x UC volume)
atom sizes
properties (centric?)
isostructural materials (use databases)
2. Measure intensities of as many reflections as possible -
correct for LP, absorption
Techniques for structure detn
1. Gather supplemental info
chemical structure
density = (# formula units/UC x form. wt.)/(No x UC volume)
atom sizes
properties (centric?)
isostructural materials (use databases)
2. Measure intensities of as many reflections as possible -
correct for LP, absorption
3. Determine atom positions
a. Patterson techniques
b. heavy atom method
Techniques for structure detn
3. Determine atom positions
a. Patterson techniques
b. heavy atom method
Techniques for structure detn
3. Determine atom positions
a. Patterson techniques
b. heavy atom method
c. isomorphous replacement,
anomalous scattering
Techniques for structure detn
3. Determine atom positions
a. Patterson techniques
b. heavy atom method
c. isomorphous replacement,
anomalous scattering
d. direct methods
Unitary structure factors
Techniques for structure detn
3. Determine atom positions
d. direct methods
Unitary structure factors
Example: center of symmetry
Additional symmetry elements give
other relationships
Techniques for structure detn
4. Refine structure
adjust positional parameters to get best
agreement betwn Fobs & Fcalc
use least squares technique
FOM – the R factor
Techniques for structure detn
4. Refine structure
adjust positional parameters to get best
agreement betwn Fobs & Fcalc
use least squares technique
FOM – the R factor
Include thermal parameters for each atom
Techniques for structure detn
4. Refine structure
Include thermal parameters for each atom
or
Techniques for structure detn
4. Refine structure
Include thermal parameters for each atom
or
For anisotropic vibration, thermal ellipsoid for
each atom
Techniques for structure detn
Rietveld refinement
For powder diffraction data
Not a structure determination procedure
Whole pattern used
Need to model peak shapes
Techniques for structure detn
Rietveld refinement
For powder diffraction data
Not a structure determination procedure
Whole pattern used
Need to model peak shapes
Many data, many parameters:
lattice params, backgrd curve coeffs,
positional params,temp factors, peak
shape params, texture factor, etc.
Techniques for structure detn
Rietveld refinement

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structure analysis.ppt

  • 1. Procedure for structure analysis Overview of strategy What is needed lattice parameters space group equipoint occupation positional parameters reflection positions reflection intensities
  • 2. Procedure for structure analysis Overview of strategy What is needed lattice parameters space group done simultaneously reflection positions
  • 3. Procedure for structure analysis Overview of strategy What is needed lattice parameters space group done simultaneously need crystal system for size & shape of UC some info on symmetry also acquired reflection positions
  • 4. Procedure for structure analysis Overview of strategy What is needed lattice parameters space group done simultaneously need crystal system for size & shape of UC some info on symmetry also acquired small no. reflections needed for crystal system and approx. LPs reflection positions
  • 5. Procedure for structure analysis Overview of strategy What is needed lattice parameters space group done simultaneously need crystal system for size & shape of UC some info on symmetry also acquired small no. reflections needed for crystal system and approx. LPs large no. for precise LPs reflection positions
  • 6. Examples for LP detn Get a-value for each reflection Which one is correct? or best?
  • 7. Examples for LP detn Depends upon  Consider effect of expt'l error on a-values at different s Braggs' law says error in d depends on error in sin 
  • 8. Examples for LP detn Braggs' law says error in d depends on error in sin  d eqn says error in a (cubic) depends on error in d d2 = a2/(h2 + k2 + l2) Thus, error in a depends on error in sin 
  • 9. Precise LPs Best a-value at  = 90° extrapolate a-values vs. cos2 
  • 10. Precise LPs Best a-value at  = 90° extrapolate a-values vs. cos2 
  • 11. Precise LPs Best a-value at  = 90° extrapolate a-values vs. cos2 
  • 12. Precise LPs Another common extrapolation fcn - Nelson-Riley fcn
  • 13. Procedure for structure analysis Overview of strategy LPs & SG done simultaneously need crystal system for size & shape of UC some info on symmetry also acquired systematic extinctions ––> Bravais lattice glide planes, screw axes space group - almost ex: Imma (centric) ––– Im21a (non-centric) get correct SG in final structure detn
  • 14. Techniques for structure detn 1. Gather supplemental info chemical structure density = (# formula units/UC x form. wt.)/(No x UC volume)
  • 15. Techniques for structure detn 1. Gather supplemental info chemical structure density = (# formula units/UC x form. wt.)/(No x UC volume) atom sizes
  • 16. Techniques for structure detn 1. Gather supplemental info chemical structure density = (# formula units/UC x form. wt.)/(No x UC volume) atom sizes properties (centric?) isostructural materials (use databases) Ex: Al9Co3Ce do search on LPs
  • 17. Techniques for structure detn 1. Gather supplemental info chemical structure density = (# formula units/UC x form. wt.)/(No x UC volume) atom sizes properties (centric?) isostructural materials (use databases) Ex: Al9Co3Ce do search on LPs
  • 18. Techniques for structure detn 1. Gather supplemental info chemical structure density = (# formula units/UC x form. wt.)/(No x UC volume) atom sizes properties (centric?) isostructural materials (use databases) Ex: Al9Co3Ce do search on LPs Ga9Co3Nd (structure known) only need to "refine" Al9Co3Ce structure
  • 19. Techniques for structure detn 1. Gather supplemental info chemical structure density = (# formula units/UC x form. wt.)/(No x UC volume) atom sizes properties (centric?) isostructural materials (use databases) 2. Measure intensities of as many reflections as possible - correct for LP, absorption
  • 20. Techniques for structure detn 1. Gather supplemental info chemical structure density = (# formula units/UC x form. wt.)/(No x UC volume) atom sizes properties (centric?) isostructural materials (use databases) 2. Measure intensities of as many reflections as possible - correct for LP, absorption 3. Determine atom positions a. Patterson techniques b. heavy atom method
  • 21. Techniques for structure detn 3. Determine atom positions a. Patterson techniques b. heavy atom method
  • 22. Techniques for structure detn 3. Determine atom positions a. Patterson techniques b. heavy atom method c. isomorphous replacement, anomalous scattering
  • 23. Techniques for structure detn 3. Determine atom positions a. Patterson techniques b. heavy atom method c. isomorphous replacement, anomalous scattering d. direct methods Unitary structure factors
  • 24. Techniques for structure detn 3. Determine atom positions d. direct methods Unitary structure factors Example: center of symmetry Additional symmetry elements give other relationships
  • 25. Techniques for structure detn 4. Refine structure adjust positional parameters to get best agreement betwn Fobs & Fcalc use least squares technique FOM – the R factor
  • 26. Techniques for structure detn 4. Refine structure adjust positional parameters to get best agreement betwn Fobs & Fcalc use least squares technique FOM – the R factor Include thermal parameters for each atom
  • 27. Techniques for structure detn 4. Refine structure Include thermal parameters for each atom or
  • 28. Techniques for structure detn 4. Refine structure Include thermal parameters for each atom or For anisotropic vibration, thermal ellipsoid for each atom
  • 29. Techniques for structure detn Rietveld refinement For powder diffraction data Not a structure determination procedure Whole pattern used Need to model peak shapes
  • 30. Techniques for structure detn Rietveld refinement For powder diffraction data Not a structure determination procedure Whole pattern used Need to model peak shapes Many data, many parameters: lattice params, backgrd curve coeffs, positional params,temp factors, peak shape params, texture factor, etc.
  • 31. Techniques for structure detn Rietveld refinement